Wall clock time and date at job start Fri Apr 10 2020 17:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47098 * 2 1 4 4 C 1.50700 * 109.47476 * 239.99799 * 2 1 3 5 5 H 1.07997 * 120.00004 * 245.16236 * 4 2 1 6 6 C 1.37875 * 119.99940 * 65.15654 * 4 2 1 7 7 N 1.31515 * 120.00206 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99836 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47373 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47079 * 120.00571 * 8 6 4 11 11 H 1.48504 * 109.47102 * 240.00128 * 8 6 4 12 12 N 1.46504 * 109.46759 * 119.99472 * 2 1 3 13 13 C 1.46496 * 119.99555 * 54.81143 * 12 2 1 14 14 S 1.65601 * 120.00104 * 234.80556 * 12 2 1 15 15 O 1.42097 * 106.39918 * 162.48635 * 14 12 2 16 16 O 1.42095 * 106.40075 * 29.56395 * 14 12 2 17 17 N 1.65596 * 107.21892 * 276.02291 * 14 12 2 18 18 C 1.46495 * 120.00260 * 299.16150 * 17 14 12 19 19 H 1.08997 * 110.34476 * 9.06764 * 18 17 14 20 20 C 1.51104 * 110.39033 * 246.77619 * 18 17 14 21 21 C 1.30522 * 111.10498 * 224.63630 * 20 18 17 22 22 C 1.51105 * 111.10615 * 0.02562 * 21 20 18 23 23 H 1.09000 * 110.38413 * 257.61970 * 22 21 20 24 24 C 1.52996 * 110.38527 * 135.24642 * 22 21 20 25 25 O 1.42898 * 109.47504 * 66.45276 * 24 22 21 26 26 C 1.54634 * 110.48387 * 131.41598 * 18 17 14 27 27 H 1.09006 * 109.46503 * 59.99905 * 1 2 3 28 28 H 1.08994 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47375 * 300.00542 * 1 2 3 30 30 H 0.96990 * 120.00340 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47184 * 269.99126 * 13 12 2 32 32 H 1.09000 * 109.47776 * 29.99787 * 13 12 2 33 33 H 1.09005 * 109.46791 * 149.99845 * 13 12 2 34 34 H 0.97005 * 119.99801 * 119.15896 * 17 14 12 35 35 H 1.08003 * 124.44024 * 44.66121 * 20 18 17 36 36 H 1.08004 * 124.44544 * 179.97438 * 21 20 18 37 37 H 1.09000 * 109.46792 * 186.45448 * 24 22 21 38 38 H 1.08997 * 109.47249 * 306.44942 * 24 22 21 39 39 H 0.96693 * 114.00518 * 179.97438 * 25 24 22 40 40 H 1.09001 * 111.04046 * 261.52748 * 26 18 17 41 41 H 1.09006 * 111.03858 * 25.46453 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5828 -1.6345 -1.1334 6 6 1.7893 -0.1807 -2.4799 7 7 1.1194 0.9449 -2.5980 8 14 2.4115 -1.0617 -4.0050 9 1 3.1301 -2.2978 -3.6041 10 1 1.2615 -1.4180 -4.8746 11 1 3.3368 -0.1698 -4.7490 12 7 2.0183 -0.6905 1.1963 13 6 1.5730 -2.0556 1.4870 14 16 3.0735 0.0719 2.2197 15 8 3.0351 -0.6476 3.4445 16 8 2.7910 1.4613 2.1253 17 7 4.5951 -0.1390 1.6012 18 6 5.1400 -1.4893 1.4408 19 1 4.3655 -2.2345 1.6221 20 6 6.3050 -1.7019 2.3793 21 6 7.2995 -2.2868 1.7690 22 6 6.9638 -2.5614 0.3215 23 1 6.7088 -3.6122 0.1837 24 6 8.1373 -2.1738 -0.5804 25 8 9.2446 -3.0385 -0.3197 26 6 5.7377 -1.6671 0.0257 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.9486 1.3177 -3.4769 31 1 0.6708 -2.0212 2.0977 32 1 1.3598 -2.5750 0.5528 33 1 2.3572 -2.5863 2.0270 34 1 5.1256 0.6317 1.3450 35 1 6.3134 -1.4086 3.4187 36 1 8.2392 -2.5405 2.2370 37 1 7.8398 -2.2692 -1.6247 38 1 8.4261 -1.1425 -0.3777 39 1 10.0258 -2.8504 -0.8575 40 1 5.0344 -2.1733 -0.6355 41 1 6.0449 -0.7085 -0.3926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330432800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:07 Heat of formation + Delta-G solvation = -108.910487 kcal Electronic energy + Delta-G solvation = -24489.748313 eV Core-core repulsion = 20917.828445 eV Total energy + Delta-G solvation = -3571.919868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.28843 -36.71083 -36.50453 -36.14722 -35.22482 -33.34011 -32.61543 -29.82741 -29.14978 -27.45071 -25.61658 -25.13847 -23.69542 -20.86012 -20.62018 -19.03186 -18.72645 -17.39046 -17.27792 -16.82176 -16.45188 -16.13219 -15.62735 -15.18319 -14.56560 -14.30328 -13.85085 -13.42860 -13.30169 -13.04479 -12.67117 -12.30048 -12.07877 -11.91002 -11.78280 -11.71564 -11.51614 -11.38986 -11.31351 -11.20956 -11.19672 -11.04823 -10.90990 -10.81262 -10.42373 -10.30349 -10.10292 -10.05438 -9.39399 -9.20441 -8.97785 -8.52987 -7.98806 -6.13751 -4.21201 1.27255 2.28708 3.19059 3.28188 3.29193 3.51706 4.10247 4.17483 4.31330 4.64721 4.67284 5.02811 5.04533 5.18208 5.23007 5.25599 5.28434 5.52013 5.52971 5.65478 5.76747 5.94022 6.05095 6.12683 6.26467 6.31015 6.45780 6.50999 6.60897 6.81220 6.82214 6.86055 7.08451 7.28790 7.47329 7.50288 7.59029 7.74982 7.96880 8.21220 8.82414 9.44875 10.92567 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.006870 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.821935 B = 4074.768311 C = 5930.489113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.104 3.896 14 S 2.782 3.218 15 O -0.999 6.999 16 O -0.984 6.984 17 N -1.116 6.116 18 C 0.184 3.816 19 H 0.096 0.904 20 C -0.173 4.173 21 C -0.145 4.145 22 C -0.071 4.071 23 H 0.090 0.910 24 C 0.084 3.916 25 O -0.575 6.575 26 C -0.122 4.122 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.014 0.986 30 H 0.263 0.737 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.412 0.588 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.376 0.624 40 H 0.091 0.909 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.947 -6.084 3.998 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.078 0.922 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.833 5.833 13 C -0.042 4.042 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.968 6.968 17 N -0.873 5.873 18 C 0.077 3.923 19 H 0.114 0.886 20 C -0.193 4.193 21 C -0.164 4.164 22 C -0.090 4.090 23 H 0.108 0.892 24 C 0.007 3.993 25 O -0.380 6.380 26 C -0.162 4.162 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.245 0.755 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.223 0.777 40 H 0.109 0.891 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.075 -5.877 5.156 12.753 hybrid contribution 0.996 -0.067 -1.849 2.101 sum 11.071 -5.944 3.307 12.994 Atomic orbital electron populations 1.21990 0.98052 0.99555 1.00367 1.18726 0.91822 0.92835 0.80140 0.92196 1.21406 1.35602 1.08968 0.90267 0.91849 1.24926 0.95077 0.94889 0.98930 1.69918 1.39717 1.18930 1.23889 0.86543 0.78654 0.79641 0.83123 1.19726 1.21054 1.21065 1.57708 1.59702 1.24860 1.41079 1.21231 0.98633 0.83107 1.01266 1.01823 0.72707 0.73109 0.73306 1.93545 1.86871 1.74778 1.43068 1.93589 1.83696 1.32325 1.87200 1.56040 1.35334 1.12752 1.83169 1.20392 0.95053 0.83522 0.93367 0.88592 1.23706 0.95604 1.00115 0.99895 1.23164 0.98506 0.99309 0.95435 1.21071 0.93823 1.01029 0.93044 0.89155 1.22230 0.86447 0.92740 0.97916 1.86470 1.25017 1.59620 1.66856 1.22884 0.95839 1.00567 0.96867 0.89836 0.94730 0.96646 0.92699 0.93839 0.90333 0.93036 0.75472 0.85446 0.85616 0.93341 0.93408 0.77741 0.89083 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.94 37.16 0.33 -2.89 16 2 C 0.27 6.31 2.53 -69.08 -0.18 6.13 16 3 H 0.06 1.59 7.00 -51.93 -0.36 1.23 16 4 C -0.52 -12.72 8.08 -34.44 -0.28 -13.00 16 5 H 0.06 1.48 7.52 -52.49 -0.39 1.09 16 6 C 0.06 1.64 5.32 -17.82 -0.09 1.54 16 7 N -0.89 -23.84 11.71 55.43 0.65 -23.19 16 8 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.99 -19.87 3.12 -115.85 -0.36 -20.23 16 13 C 0.10 1.79 9.02 59.84 0.54 2.33 16 14 S 2.78 53.95 5.92 -107.50 -0.64 53.31 16 15 O -1.00 -20.31 16.86 -57.17 -0.96 -21.28 16 16 O -0.98 -22.35 16.85 -57.17 -0.96 -23.31 16 17 N -1.12 -17.74 5.50 -4.98 -0.03 -17.77 16 18 C 0.18 2.64 3.58 -68.03 -0.24 2.40 16 19 H 0.10 1.39 6.63 -51.93 -0.34 1.05 16 20 C -0.17 -2.24 10.41 -35.69 -0.37 -2.61 16 21 C -0.15 -1.73 9.92 -35.69 -0.35 -2.08 16 22 C -0.07 -0.84 3.19 -90.72 -0.29 -1.13 16 23 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 24 C 0.08 0.88 6.38 37.16 0.24 1.12 16 25 O -0.57 -5.85 13.48 -35.23 -0.47 -6.33 16 26 C -0.12 -1.63 6.41 -25.02 -0.16 -1.79 16 27 H 0.08 2.10 6.49 -51.93 -0.34 1.76 16 28 H 0.03 0.73 7.55 -51.93 -0.39 0.34 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.34 7.31 -51.93 -0.38 0.96 16 33 H 0.05 0.78 6.46 -51.93 -0.34 0.44 16 34 H 0.41 5.91 8.94 -34.47 -0.31 5.60 16 35 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.38 2.13 9.12 45.56 0.42 2.54 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.10 7.85 -51.93 -0.41 0.70 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -31.33 346.21 -8.80 -40.13 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.36 Total: 8.82 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.86 Total: -9.99 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.26 Total: -61.20 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -2.40 Total: -50.92 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 53.95 SS G_CDS: -0.64 Total: 53.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.33 -8.80 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330432800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.778 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds