Wall clock time and date at job start Fri Apr 10 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.45758 * 117.94382 * 2 1 4 4 C 1.52921 * 110.48489 * 199.07381 * 3 2 1 5 5 H 1.08996 * 109.60528 * 69.15857 * 4 3 2 6 6 N 1.46500 * 109.60323 * 189.49093 * 4 3 2 7 7 S 1.65603 * 119.99490 * 264.67342 * 6 4 3 8 8 O 1.42102 * 104.27965 * 308.92411 * 7 6 4 9 9 O 1.42104 * 104.27544 * 181.07037 * 7 6 4 10 10 C 1.81396 * 104.45253 * 64.99880 * 7 6 4 11 11 C 1.53001 * 109.47186 * 179.97438 * 10 7 6 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 7 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46999 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46942 * 119.99666 * 17 15 13 20 20 H 1.48504 * 109.46979 * 239.99580 * 17 15 13 21 21 C 1.53346 * 108.80708 * 309.32646 * 4 3 2 22 22 C 1.53025 * 108.44114 * 67.30618 * 21 4 3 23 23 C 1.33350 * 117.94636 * 180.02562 * 2 1 3 24 24 O 1.21283 * 118.24629 * 357.75929 * 23 2 1 25 25 H 1.09006 * 109.46569 * 90.00211 * 1 2 3 26 26 H 1.08998 * 109.47461 * 210.00214 * 1 2 3 27 27 H 1.08997 * 109.47384 * 330.00920 * 1 2 3 28 28 H 1.08999 * 109.30518 * 78.75847 * 3 2 1 29 29 H 1.09001 * 109.13041 * 319.27477 * 3 2 1 30 30 H 0.96997 * 120.00082 * 84.67204 * 6 4 3 31 31 H 1.09001 * 109.46704 * 59.99668 * 10 7 6 32 32 H 1.09002 * 109.47134 * 299.99954 * 10 7 6 33 33 H 1.09001 * 109.46652 * 60.00206 * 11 10 7 34 34 H 1.08992 * 109.47514 * 300.00295 * 11 10 7 35 35 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 36 36 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 37 37 H 0.97000 * 120.00333 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.67480 * 187.18600 * 21 4 3 39 39 H 1.09000 * 109.67175 * 307.71158 * 21 4 3 40 40 H 1.09006 * 109.44203 * 191.11952 * 22 21 4 41 41 H 1.09000 * 109.18508 * 71.39787 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 -0.4681 5 1 3.6102 0.8753 -1.5288 6 7 4.3254 2.3766 -0.2478 7 16 4.4762 3.4750 -1.4780 8 8 4.9633 2.7107 -2.5725 9 8 5.2503 4.5260 -0.9164 10 6 2.7801 4.0337 -1.7965 11 6 2.7867 5.0648 -2.9269 12 6 1.3560 5.5356 -3.1959 13 6 1.3623 6.5507 -4.3098 14 1 2.2935 6.8316 -4.7791 15 6 0.1792 7.1209 -4.7297 16 7 -0.9549 6.7785 -4.1585 17 14 0.1870 8.3786 -6.1108 18 1 1.5797 8.5881 -6.5817 19 1 -0.6471 7.8839 -7.2354 20 1 -0.3653 9.6640 -5.6128 21 6 4.2517 -0.0021 0.3366 22 6 3.5839 -1.3239 -0.0489 23 6 2.0900 -1.1780 -0.0005 24 8 1.4159 -2.1854 0.0408 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 2.1398 1.6999 1.0090 29 1 1.6260 1.9689 -0.6719 30 1 4.7206 2.5613 0.6185 31 1 2.3716 4.4875 -0.8936 32 1 2.1650 3.1815 -2.0852 33 1 3.1954 4.6113 -3.8299 34 1 3.4017 5.9170 -2.6379 35 1 0.7412 4.6832 -3.4851 36 1 0.9468 5.9890 -2.2931 37 1 -1.7872 7.1798 -4.4536 38 1 5.3162 -0.0455 0.1061 39 1 4.1137 0.1791 1.4025 40 1 3.8943 -2.1036 0.6468 41 1 3.8882 -1.5978 -1.0590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330875709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:14 Heat of formation + Delta-G solvation = -122.003388 kcal Electronic energy + Delta-G solvation = -23426.750501 eV Core-core repulsion = 19854.262881 eV Total energy + Delta-G solvation = -3572.487619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79966 -37.65137 -36.96513 -35.89914 -35.08485 -34.76199 -32.99522 -32.26309 -28.86208 -27.88785 -27.18036 -24.68365 -23.74095 -22.53417 -20.77576 -19.66867 -19.00126 -17.57789 -17.30142 -16.82479 -16.60137 -16.46013 -15.85070 -15.72652 -15.01912 -14.76313 -14.52589 -14.33953 -14.23501 -13.64704 -13.00064 -12.89634 -12.68145 -12.44397 -12.39943 -12.32435 -12.09452 -12.07000 -11.95405 -11.85804 -11.66079 -11.36135 -11.24281 -10.97969 -10.90032 -10.49964 -10.11766 -10.03416 -9.88008 -9.42994 -9.16293 -9.01913 -8.46133 -6.10999 -4.14098 0.28773 2.36901 2.45319 2.84784 3.26142 3.34060 3.38596 3.77115 4.08833 4.16135 4.19702 4.29573 4.38227 4.44186 4.75332 4.88934 4.90029 4.96510 5.08097 5.10104 5.21108 5.26007 5.34880 5.42042 5.43440 5.53603 5.66963 5.72667 5.77872 6.03204 6.17327 6.34637 6.66908 6.78955 7.12398 7.50033 7.59237 7.86517 7.86786 8.26895 8.92276 9.51192 11.00187 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.003674 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.046390 B = 7619.579849 C = 8930.406538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.085 3.915 4 C 0.133 3.867 5 H 0.106 0.894 6 N -1.114 6.114 7 S 2.597 3.403 8 O -0.958 6.958 9 O -0.958 6.958 10 C -0.612 4.612 11 C -0.105 4.105 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.126 4.126 22 C -0.133 4.133 23 C 0.513 3.487 24 O -0.554 6.554 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.418 0.582 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.261 0.739 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -13.525 12.311 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.336 5.336 3 C -0.040 4.040 4 C 0.024 3.976 5 H 0.124 0.876 6 N -0.871 5.871 7 S 2.693 3.307 8 O -0.948 6.948 9 O -0.948 6.948 10 C -0.743 4.743 11 C -0.145 4.145 12 C -0.008 4.008 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.165 4.165 22 C -0.173 4.173 23 C 0.301 3.699 24 O -0.432 6.432 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.252 0.748 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.181 -13.810 11.745 19.890 hybrid contribution -0.779 0.923 -0.173 1.221 sum 7.401 -12.887 11.572 18.835 Atomic orbital electron populations 1.21792 0.78807 1.03553 1.02741 1.47118 1.07830 1.05639 1.73046 1.22204 0.93171 0.85308 1.03345 1.21019 0.89844 0.84754 1.01976 0.87630 1.55758 1.69430 1.31279 1.30600 1.05491 0.78169 0.73534 0.73548 1.93584 1.78164 1.69735 1.53295 1.93596 1.67641 1.56242 1.77364 1.30675 1.22307 1.11030 1.10335 1.21509 1.04364 0.95116 0.93505 1.19066 0.88210 0.96348 0.97134 1.21280 0.93419 1.23469 1.18335 0.92301 1.25013 0.95547 0.96910 0.96852 1.69958 0.98013 1.43421 1.41994 0.86504 0.78242 0.81161 0.81944 1.19582 1.20920 1.20928 1.21934 1.01326 0.92501 1.00720 1.21640 0.90860 0.99238 1.05610 1.20210 0.91004 0.82724 0.75918 1.90724 1.66481 1.35662 1.50377 0.92028 0.89987 0.90843 0.90246 0.89408 0.74771 0.85031 0.85567 0.91493 0.91447 0.96142 0.96094 0.92922 0.89132 0.90288 0.87482 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.24 59.85 0.61 1.29 16 2 N -0.60 -5.73 3.21 -182.85 -0.59 -6.32 16 3 C 0.08 0.65 5.85 -4.48 -0.03 0.63 16 4 C 0.13 1.03 2.76 -67.79 -0.19 0.85 16 5 H 0.11 0.91 7.47 -51.93 -0.39 0.52 16 6 N -1.11 -9.16 5.37 -4.77 -0.03 -9.19 16 7 S 2.60 33.06 5.44 -107.50 -0.58 32.48 16 8 O -0.96 -15.16 17.40 -57.54 -1.00 -16.17 16 9 O -0.96 -15.14 18.08 -57.54 -1.04 -16.18 16 10 C -0.61 -8.21 5.46 37.16 0.20 -8.01 16 11 C -0.11 -1.99 5.16 -26.73 -0.14 -2.13 16 12 C 0.03 0.74 4.97 -27.88 -0.14 0.60 16 13 C -0.53 -14.40 9.11 -34.44 -0.31 -14.71 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.13 -0.76 5.58 -26.54 -0.15 -0.91 16 22 C -0.13 -0.96 6.03 -28.12 -0.17 -1.13 16 23 C 0.51 5.51 7.47 -11.87 -0.09 5.42 16 24 O -0.55 -8.06 16.18 5.56 0.09 -7.97 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.82 7.13 -51.93 -0.37 0.45 16 27 H 0.07 0.53 8.01 -51.93 -0.42 0.12 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.68 6.01 -51.93 -0.31 0.36 16 30 H 0.42 2.51 8.80 -34.48 -0.30 2.21 16 31 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 32 H 0.13 1.47 6.68 -51.92 -0.35 1.12 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -36.68 347.62 -9.01 -45.69 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.33 Total: -1.95 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.49 Total: -16.58 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.12 Total: -40.69 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.95 Total: -40.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 33.06 SS G_CDS: -0.58 Total: 32.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.68 -9.01 -45.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.313 kcal (2) G-P(sol) polarization free energy of solvation -36.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds