Wall clock time and date at job start Fri Apr 10 2020 17:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.45758 * 117.94382 * 2 1 4 4 C 1.52921 * 110.48489 * 199.07381 * 3 2 1 5 5 H 1.08996 * 109.60528 * 69.15857 * 4 3 2 6 6 N 1.46500 * 109.60323 * 189.49093 * 4 3 2 7 7 S 1.65603 * 119.99490 * 264.67342 * 6 4 3 8 8 O 1.42102 * 104.27965 * 308.92411 * 7 6 4 9 9 O 1.42104 * 104.27544 * 181.07037 * 7 6 4 10 10 C 1.81396 * 104.45253 * 64.99880 * 7 6 4 11 11 C 1.53001 * 109.47186 * 179.97438 * 10 7 6 12 12 C 1.53000 * 109.46886 * 179.97438 * 11 10 7 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99751 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00094 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46999 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46942 * 119.99666 * 17 15 13 20 20 H 1.48504 * 109.46979 * 239.99580 * 17 15 13 21 21 C 1.53346 * 108.80708 * 309.32646 * 4 3 2 22 22 C 1.53025 * 108.44114 * 67.30618 * 21 4 3 23 23 C 1.33350 * 117.94636 * 180.02562 * 2 1 3 24 24 O 1.21283 * 118.24629 * 357.75929 * 23 2 1 25 25 H 1.09006 * 109.46569 * 90.00211 * 1 2 3 26 26 H 1.08998 * 109.47461 * 210.00214 * 1 2 3 27 27 H 1.08997 * 109.47384 * 330.00920 * 1 2 3 28 28 H 1.08999 * 109.30518 * 78.75847 * 3 2 1 29 29 H 1.09001 * 109.13041 * 319.27477 * 3 2 1 30 30 H 0.96997 * 120.00082 * 84.67204 * 6 4 3 31 31 H 1.09001 * 109.46704 * 59.99668 * 10 7 6 32 32 H 1.09002 * 109.47134 * 299.99954 * 10 7 6 33 33 H 1.09001 * 109.46652 * 60.00206 * 11 10 7 34 34 H 1.08992 * 109.47514 * 300.00295 * 11 10 7 35 35 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 36 36 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 37 37 H 0.97000 * 120.00333 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.67480 * 187.18600 * 21 4 3 39 39 H 1.09000 * 109.67175 * 307.71158 * 21 4 3 40 40 H 1.09006 * 109.44203 * 191.11952 * 22 21 4 41 41 H 1.09000 * 109.18508 * 71.39787 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 -0.4681 5 1 3.6102 0.8753 -1.5288 6 7 4.3254 2.3766 -0.2478 7 16 4.4762 3.4750 -1.4780 8 8 4.9633 2.7107 -2.5725 9 8 5.2503 4.5260 -0.9164 10 6 2.7801 4.0337 -1.7965 11 6 2.7867 5.0648 -2.9269 12 6 1.3560 5.5356 -3.1959 13 6 1.3623 6.5507 -4.3098 14 1 2.2935 6.8316 -4.7791 15 6 0.1792 7.1209 -4.7297 16 7 -0.9549 6.7785 -4.1585 17 14 0.1870 8.3786 -6.1108 18 1 1.5797 8.5881 -6.5817 19 1 -0.6471 7.8839 -7.2354 20 1 -0.3653 9.6640 -5.6128 21 6 4.2517 -0.0021 0.3366 22 6 3.5839 -1.3239 -0.0489 23 6 2.0900 -1.1780 -0.0005 24 8 1.4159 -2.1854 0.0408 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 2.1398 1.6999 1.0090 29 1 1.6260 1.9689 -0.6719 30 1 4.7206 2.5613 0.6185 31 1 2.3716 4.4875 -0.8936 32 1 2.1650 3.1815 -2.0852 33 1 3.1954 4.6113 -3.8299 34 1 3.4017 5.9170 -2.6379 35 1 0.7412 4.6832 -3.4851 36 1 0.9468 5.9890 -2.2931 37 1 -1.7872 7.1798 -4.4536 38 1 5.3162 -0.0455 0.1061 39 1 4.1137 0.1791 1.4025 40 1 3.8943 -2.1036 0.6468 41 1 3.8882 -1.5978 -1.0590 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330875709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:13 Heat of formation + Delta-G solvation = -150.446347 kcal Electronic energy + Delta-G solvation = -23427.983880 eV Core-core repulsion = 19854.262881 eV Total energy + Delta-G solvation = -3573.720998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54816 -38.48920 -38.05670 -37.05700 -36.46095 -35.83310 -34.16202 -33.65440 -29.78647 -29.39780 -27.89922 -25.73632 -25.12773 -23.20424 -22.40131 -20.56924 -19.83737 -18.68587 -18.46376 -18.00583 -17.54962 -17.29192 -17.05765 -16.79485 -16.46184 -15.95200 -15.57257 -15.24982 -15.05532 -14.54038 -14.33440 -14.05934 -13.77628 -13.60697 -13.46734 -13.24175 -13.19089 -13.15534 -13.03647 -12.94691 -12.79261 -12.74156 -12.59898 -12.33225 -12.13741 -11.83153 -11.72891 -11.35914 -11.18449 -10.82089 -10.56938 -10.50785 -9.78507 -8.22413 -6.32522 -0.76653 1.39533 1.41130 1.53438 1.57337 1.61287 2.08283 2.40106 2.74151 3.11794 3.20225 3.51258 3.55785 3.60673 3.73777 3.87389 3.92549 4.19429 4.31837 4.38321 4.40808 4.44696 4.55361 4.63699 4.69417 4.84852 4.89515 4.93472 4.97644 5.06652 5.09013 5.19219 5.32449 5.47551 5.65631 5.81028 6.09605 6.21231 6.38859 6.83647 7.08238 7.36975 8.88941 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.003674 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.046390 B = 7619.579849 C = 8930.406538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.079 3.921 4 C 0.127 3.873 5 H 0.098 0.902 6 N -1.092 6.092 7 S 2.628 3.372 8 O -0.988 6.988 9 O -0.987 6.987 10 C -0.614 4.614 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.551 4.551 14 H 0.059 0.941 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.959 3.041 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.277 1.277 21 C -0.118 4.118 22 C -0.128 4.128 23 C 0.504 3.496 24 O -0.601 6.601 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.433 0.567 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.003 0.997 36 H 0.005 0.995 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.102 -13.383 13.090 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C -0.045 4.045 4 C 0.019 3.981 5 H 0.116 0.884 6 N -0.853 5.853 7 S 2.723 3.277 8 O -0.977 6.977 9 O -0.977 6.977 10 C -0.745 4.745 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.589 4.589 14 H 0.077 0.923 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.784 3.216 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.157 4.157 22 C -0.168 4.168 23 C 0.294 3.706 24 O -0.484 6.484 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.271 0.729 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.379 -13.626 12.529 20.752 hybrid contribution -1.180 0.844 -0.377 1.499 sum 8.200 -12.782 12.152 19.450 Atomic orbital electron populations 1.21829 0.79021 1.03952 1.02492 1.47228 1.08003 1.06104 1.72074 1.22371 0.92897 0.84420 1.04833 1.21150 0.90050 0.84791 1.02146 0.88399 1.55219 1.69349 1.30362 1.30360 1.04310 0.76978 0.73046 0.73341 1.93550 1.78555 1.70384 1.55241 1.93556 1.68365 1.57871 1.77918 1.30657 1.24124 1.10392 1.09309 1.21297 1.00778 0.96743 0.95731 1.18964 0.91232 0.95028 0.95501 1.21784 0.93564 1.24259 1.19302 0.92274 1.25878 0.95253 0.98925 0.99314 1.70061 0.98610 1.44692 1.43495 0.85486 0.78532 0.78676 0.78915 1.18817 1.20402 1.20304 1.21932 1.01660 0.90675 1.01427 1.21666 0.88258 1.00433 1.06461 1.20890 0.92387 0.82300 0.74982 1.90701 1.67745 1.37199 1.52732 0.92646 0.91249 0.88783 0.87868 0.89360 0.72891 0.82823 0.83817 0.91700 0.91489 0.97820 0.97623 0.92707 0.87728 0.88446 0.86143 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.24 127.77 1.31 2.55 16 2 N -0.60 -10.61 3.21 -851.59 -2.73 -13.35 16 3 C 0.08 1.01 5.85 86.49 0.51 1.52 16 4 C 0.13 1.62 2.76 45.08 0.12 1.74 16 5 H 0.10 1.47 7.47 -2.39 -0.02 1.45 16 6 N -1.09 -14.60 5.37 -169.02 -0.91 -15.50 16 7 S 2.63 61.88 5.44 -56.49 -0.31 61.57 16 8 O -0.99 -29.80 17.40 -127.65 -2.22 -32.03 16 9 O -0.99 -29.43 18.08 -127.65 -2.31 -31.74 16 10 C -0.61 -15.53 5.46 71.98 0.39 -15.13 16 11 C -0.11 -3.97 5.16 30.59 0.16 -3.81 16 12 C 0.03 1.51 4.97 29.85 0.15 1.66 16 13 C -0.55 -30.38 9.11 25.60 0.23 -30.15 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 17 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.12 -1.03 5.58 30.72 0.17 -0.86 16 22 C -0.13 -1.58 6.03 29.69 0.18 -1.40 16 23 C 0.50 10.34 7.47 87.72 0.66 10.99 16 24 O -0.60 -17.66 16.18 -3.04 -0.05 -17.70 16 25 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.07 1.41 7.13 -2.39 -0.02 1.40 16 27 H 0.09 1.24 8.01 -2.39 -0.02 1.22 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.15 6.01 -2.39 -0.01 1.13 16 30 H 0.43 3.58 8.80 -96.75 -0.85 2.73 16 31 H 0.15 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.14 3.11 6.68 -2.39 -0.02 3.09 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.54 8.13 -2.39 -0.02 0.52 16 40 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -79.91 347.62 -1.70 -81.60 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.18 Total: 7.95 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 4.34 Total: -32.16 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -3.36 Total: -82.84 kcal Atomic # 8 Polarization: -76.89 SS G_CDS: -4.58 Total: -81.47 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 61.88 SS G_CDS: -0.31 Total: 61.57 kcal Total: -79.91 -1.70 -81.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.842 kcal (2) G-P(sol) polarization free energy of solvation -79.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds