Wall clock time and date at job start Fri Apr 10 2020 17:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65608 * 119.99423 * 2 1 4 4 O 1.42099 * 104.27413 * 308.92216 * 3 2 1 5 5 O 1.42105 * 104.27235 * 181.07244 * 3 2 1 6 6 C 1.81398 * 104.45026 * 65.00068 * 3 2 1 7 7 C 1.52999 * 109.46565 * 185.49426 * 6 3 2 8 8 H 1.08999 * 110.00589 * 59.72316 * 7 6 3 9 9 C 1.54336 * 109.99360 * 298.68220 * 7 6 3 10 10 C 1.55148 * 103.02302 * 218.67132 * 9 7 6 11 11 C 1.54907 * 101.58481 * 35.30624 * 10 9 7 12 12 N 1.47027 * 109.87948 * 180.82207 * 7 6 3 13 13 C 1.34778 * 125.64484 * 298.38795 * 12 7 6 14 14 O 1.21286 * 120.00195 * 354.68442 * 13 12 7 15 15 C 1.50700 * 119.99966 * 174.67877 * 13 12 7 16 16 C 1.52998 * 109.47054 * 180.02562 * 15 13 12 17 17 C 1.50708 * 109.46816 * 179.97438 * 16 15 13 18 18 H 1.07991 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99771 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00033 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00234 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47120 * 269.99802 * 21 19 17 23 23 H 1.48495 * 109.46814 * 29.99603 * 21 19 17 24 24 H 1.48500 * 109.47061 * 149.99713 * 21 19 17 25 25 H 1.09005 * 109.47275 * 60.00564 * 1 2 3 26 26 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47390 * 300.00230 * 1 2 3 28 28 H 0.96993 * 119.99950 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47106 * 65.49011 * 6 3 2 30 30 H 1.08997 * 109.47081 * 305.49048 * 6 3 2 31 31 H 1.09003 * 110.84785 * 100.19792 * 9 7 6 32 32 H 1.09000 * 110.51413 * 336.98140 * 9 7 6 33 33 H 1.09001 * 111.00666 * 277.22654 * 10 9 7 34 34 H 1.09007 * 111.00781 * 153.38302 * 10 9 7 35 35 H 1.08995 * 110.36816 * 204.15343 * 11 10 9 36 36 H 1.09006 * 110.45884 * 81.87667 * 11 10 9 37 37 H 1.09001 * 109.47153 * 59.99992 * 15 13 12 38 38 H 1.09004 * 109.47000 * 300.00355 * 15 13 12 39 39 H 1.08996 * 109.47492 * 60.00186 * 16 15 13 40 40 H 1.08999 * 109.47000 * 299.99331 * 16 15 13 41 41 H 0.97000 * 119.99878 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4343 0.0000 4 8 1.7187 2.1703 -1.0714 5 8 3.6606 1.0493 -0.0258 6 6 1.8762 2.1974 1.5920 7 6 2.4770 3.6031 1.6564 8 1 2.0810 4.2153 0.8461 9 6 4.0146 3.5252 1.5487 10 6 4.4906 4.6134 2.5469 11 6 3.4223 4.5002 3.6630 12 7 2.1612 4.2229 2.9517 13 6 0.9235 4.4884 3.4145 14 8 -0.0423 4.3010 2.7051 15 6 0.7397 5.0179 4.8134 16 6 -0.7506 5.2319 5.0858 17 6 -0.9345 5.7608 6.4850 18 1 -0.0745 5.9280 7.1165 19 6 -2.2005 6.0323 6.9585 20 7 -2.3610 6.4943 8.1793 21 14 -3.6881 5.7438 5.8660 22 1 -3.9819 6.9777 5.0938 23 1 -3.4042 4.6285 4.9276 24 1 -4.8607 5.3959 6.7081 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.9499 -0.8400 0.0004 29 1 2.2814 1.5916 2.4024 30 1 0.7927 2.2605 1.6922 31 1 4.3449 3.7592 0.5366 32 1 4.3695 2.5407 1.8533 33 1 4.4715 5.6012 2.0865 34 1 5.4839 4.3828 2.9320 35 1 3.3487 5.4377 4.2142 36 1 3.6640 3.6809 4.3401 37 1 1.2679 5.9658 4.9154 38 1 1.1401 4.2999 5.5292 39 1 -1.2784 4.2838 4.9840 40 1 -1.1513 5.9497 4.3701 41 1 -3.2518 6.6849 8.5125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330888073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:28 Heat of formation + Delta-G solvation = -111.469606 kcal Electronic energy + Delta-G solvation = -23658.504395 eV Core-core repulsion = 20086.473555 eV Total energy + Delta-G solvation = -3572.030840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15665 -37.55947 -37.32015 -36.20481 -35.29772 -33.61727 -32.43258 -31.57303 -31.00762 -26.51479 -26.31141 -26.24467 -23.14450 -21.70702 -20.59825 -19.70463 -18.84652 -17.98171 -17.44155 -17.15796 -16.50378 -16.30851 -15.73813 -15.19175 -15.03905 -14.68341 -14.26819 -14.09958 -13.88993 -13.53256 -13.20856 -13.11774 -12.99202 -12.78773 -12.52822 -12.33612 -12.23805 -12.09665 -11.90833 -11.59102 -11.40462 -11.33590 -11.16510 -11.06196 -10.96903 -10.21947 -10.09398 -9.93367 -9.82633 -9.31291 -9.22177 -8.67850 -8.54639 -6.07046 -4.06180 -0.01988 2.43442 2.94182 3.03268 3.34450 3.41189 3.50157 3.50873 3.94151 4.07592 4.17353 4.40862 4.46837 4.65609 4.73565 4.80179 4.97521 5.13083 5.17178 5.24284 5.28345 5.40782 5.42120 5.45586 5.51172 5.54590 5.60296 5.71361 5.91819 5.98564 6.03221 6.30837 6.57899 6.61205 7.30094 7.36792 7.59744 7.74613 8.41483 8.51746 8.95506 9.55780 11.05738 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.003870 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.229755 B = 7233.307390 C = 8400.831506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.124 6.124 3 S 2.617 3.383 4 O -0.952 6.952 5 O -0.957 6.957 6 C -0.643 4.643 7 C 0.153 3.847 8 H 0.090 0.910 9 C -0.159 4.159 10 C -0.127 4.127 11 C 0.098 3.902 12 N -0.618 5.618 13 C 0.527 3.473 14 O -0.535 6.535 15 C -0.117 4.117 16 C 0.001 3.999 17 C -0.526 4.526 18 H 0.073 0.927 19 C 0.070 3.930 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.262 1.262 24 H -0.288 1.288 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.417 0.583 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.020 0.980 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.961 -12.113 -14.696 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.883 5.883 3 S 2.708 3.292 4 O -0.942 6.942 5 O -0.947 6.947 6 C -0.773 4.773 7 C 0.047 3.953 8 H 0.108 0.892 9 C -0.197 4.197 10 C -0.165 4.165 11 C -0.025 4.025 12 N -0.355 5.355 13 C 0.318 3.682 14 O -0.411 6.411 15 C -0.156 4.156 16 C -0.037 4.037 17 C -0.564 4.564 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.541 5.541 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.186 1.186 24 H -0.214 1.214 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.250 0.750 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.601 -11.649 -15.598 23.749 hybrid contribution -1.055 -0.575 0.341 1.249 sum 12.546 -12.224 -15.257 23.229 Atomic orbital electron populations 1.21560 0.78445 1.04332 1.02446 1.55368 1.16179 1.24480 1.92264 1.04832 0.73705 0.73853 0.76824 1.93611 1.78726 1.72213 1.49631 1.93602 1.32454 1.81345 1.87304 1.31027 1.13590 1.08605 1.24033 1.21091 0.94694 0.89807 0.89672 0.89205 1.23160 0.92766 1.01825 1.01922 1.22745 0.98836 0.99258 0.95668 1.22374 0.82982 1.02087 0.95084 1.48744 1.06393 1.62435 1.17924 1.21391 0.80201 0.76282 0.90284 1.90643 1.38762 1.52492 1.59201 1.21683 1.02829 1.01396 0.89730 1.19388 0.89447 0.97549 0.97272 1.21086 0.94315 1.43749 0.97215 0.90928 1.24963 0.99008 0.94312 0.94872 1.69908 1.22915 1.45093 1.16223 0.86799 0.82277 0.79634 0.80849 1.20183 1.18621 1.21407 0.91168 0.89863 0.91862 0.74964 0.84571 0.83712 0.89198 0.88843 0.90093 0.89225 0.89597 0.91061 0.89554 0.89536 0.95870 0.96200 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.03 59.85 0.66 1.24 16 2 N -1.12 -8.86 6.08 -16.63 -0.10 -8.96 16 3 S 2.62 27.20 5.05 -107.50 -0.54 26.66 16 4 O -0.95 -13.38 17.73 -57.54 -1.02 -14.40 16 5 O -0.96 -11.22 16.71 -57.54 -0.96 -12.18 16 6 C -0.64 -6.89 5.44 37.16 0.20 -6.69 16 7 C 0.15 1.85 2.93 -66.94 -0.20 1.65 16 8 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 9 C -0.16 -1.45 5.25 -24.89 -0.13 -1.58 16 10 C -0.13 -1.00 7.09 -24.59 -0.17 -1.17 16 11 C 0.10 0.98 6.65 -2.53 -0.02 0.96 16 12 N -0.62 -8.49 3.06 -163.01 -0.50 -8.99 16 13 C 0.53 9.52 7.59 -10.98 -0.08 9.43 16 14 O -0.54 -11.46 15.22 5.55 0.08 -11.38 16 15 C -0.12 -2.23 4.73 -27.88 -0.13 -2.36 16 16 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 17 C -0.53 -14.83 9.66 -34.44 -0.33 -15.17 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 21 Si 0.88 22.31 27.47 -169.99 -4.67 17.65 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.46 7.53 -51.93 -0.39 0.07 16 28 H 0.42 2.40 8.92 -34.48 -0.31 2.09 16 29 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.14 1.77 6.46 -51.93 -0.34 1.43 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.78 7.21 -51.93 -0.37 0.40 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.83 7.51 -51.93 -0.39 0.44 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.53 7.77 -51.93 -0.40 1.12 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 40 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -37.79 344.76 -8.48 -46.28 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.35 Total: -1.16 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -0.39 Total: -11.79 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.17 Total: -44.86 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.90 Total: -37.96 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.65 kcal Atomic # 16 Polarization: 27.20 SS G_CDS: -0.54 Total: 26.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.79 -8.48 -46.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.192 kcal (2) G-P(sol) polarization free energy of solvation -37.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds