Wall clock time and date at job start Fri Apr 10 2020 17:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65608 * 119.99423 * 2 1 4 4 O 1.42099 * 104.27413 * 308.92216 * 3 2 1 5 5 O 1.42105 * 104.27235 * 181.07244 * 3 2 1 6 6 C 1.81398 * 104.45026 * 65.00068 * 3 2 1 7 7 C 1.52999 * 109.46565 * 185.49426 * 6 3 2 8 8 H 1.08999 * 110.00589 * 59.72316 * 7 6 3 9 9 C 1.54336 * 109.99360 * 298.68220 * 7 6 3 10 10 C 1.55148 * 103.02302 * 218.67132 * 9 7 6 11 11 C 1.54907 * 101.58481 * 35.30624 * 10 9 7 12 12 N 1.47027 * 109.87948 * 180.82207 * 7 6 3 13 13 C 1.34778 * 125.64484 * 298.38795 * 12 7 6 14 14 O 1.21286 * 120.00195 * 354.68442 * 13 12 7 15 15 C 1.50700 * 119.99966 * 174.67877 * 13 12 7 16 16 C 1.52998 * 109.47054 * 180.02562 * 15 13 12 17 17 C 1.50708 * 109.46816 * 179.97438 * 16 15 13 18 18 H 1.07991 * 120.00143 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99771 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00033 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00234 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47120 * 269.99802 * 21 19 17 23 23 H 1.48495 * 109.46814 * 29.99603 * 21 19 17 24 24 H 1.48500 * 109.47061 * 149.99713 * 21 19 17 25 25 H 1.09005 * 109.47275 * 60.00564 * 1 2 3 26 26 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47390 * 300.00230 * 1 2 3 28 28 H 0.96993 * 119.99950 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47106 * 65.49011 * 6 3 2 30 30 H 1.08997 * 109.47081 * 305.49048 * 6 3 2 31 31 H 1.09003 * 110.84785 * 100.19792 * 9 7 6 32 32 H 1.09000 * 110.51413 * 336.98140 * 9 7 6 33 33 H 1.09001 * 111.00666 * 277.22654 * 10 9 7 34 34 H 1.09007 * 111.00781 * 153.38302 * 10 9 7 35 35 H 1.08995 * 110.36816 * 204.15343 * 11 10 9 36 36 H 1.09006 * 110.45884 * 81.87667 * 11 10 9 37 37 H 1.09001 * 109.47153 * 59.99992 * 15 13 12 38 38 H 1.09004 * 109.47000 * 300.00355 * 15 13 12 39 39 H 1.08996 * 109.47492 * 60.00186 * 16 15 13 40 40 H 1.08999 * 109.47000 * 299.99331 * 16 15 13 41 41 H 0.97000 * 119.99878 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4343 0.0000 4 8 1.7187 2.1703 -1.0714 5 8 3.6606 1.0493 -0.0258 6 6 1.8762 2.1974 1.5920 7 6 2.4770 3.6031 1.6564 8 1 2.0810 4.2153 0.8461 9 6 4.0146 3.5252 1.5487 10 6 4.4906 4.6134 2.5469 11 6 3.4223 4.5002 3.6630 12 7 2.1612 4.2229 2.9517 13 6 0.9235 4.4884 3.4145 14 8 -0.0423 4.3010 2.7051 15 6 0.7397 5.0179 4.8134 16 6 -0.7506 5.2319 5.0858 17 6 -0.9345 5.7608 6.4850 18 1 -0.0745 5.9280 7.1165 19 6 -2.2005 6.0323 6.9585 20 7 -2.3610 6.4943 8.1793 21 14 -3.6881 5.7438 5.8660 22 1 -3.9819 6.9777 5.0938 23 1 -3.4042 4.6285 4.9276 24 1 -4.8607 5.3959 6.7081 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.9499 -0.8400 0.0004 29 1 2.2814 1.5916 2.4024 30 1 0.7927 2.2605 1.6922 31 1 4.3449 3.7592 0.5366 32 1 4.3695 2.5407 1.8533 33 1 4.4715 5.6012 2.0865 34 1 5.4839 4.3828 2.9320 35 1 3.3487 5.4377 4.2142 36 1 3.6640 3.6809 4.3401 37 1 1.2679 5.9658 4.9154 38 1 1.1401 4.2999 5.5292 39 1 -1.2784 4.2838 4.9840 40 1 -1.1513 5.9497 4.3701 41 1 -3.2518 6.6849 8.5125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330888073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:28 Heat of formation + Delta-G solvation = -141.382425 kcal Electronic energy + Delta-G solvation = -23659.801512 eV Core-core repulsion = 20086.473555 eV Total energy + Delta-G solvation = -3573.327957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30295 -38.74035 -38.26684 -37.14055 -35.96766 -35.59476 -33.80141 -32.73382 -32.41390 -28.12020 -27.32233 -26.90431 -24.45146 -22.86297 -21.89774 -20.57293 -20.04141 -19.20669 -18.75887 -18.25761 -17.74507 -17.30795 -16.72025 -16.40266 -16.26850 -16.06878 -15.69112 -15.14105 -14.78431 -14.63763 -14.51256 -14.33138 -14.06229 -13.88318 -13.75190 -13.44599 -13.29382 -13.20419 -13.09364 -12.89976 -12.60040 -12.32052 -12.16935 -12.07852 -12.02287 -11.99534 -11.79521 -11.67234 -11.41360 -10.81949 -10.79390 -10.55638 -9.77565 -8.32672 -6.35753 -0.86510 1.32262 1.34248 1.48475 1.55542 1.68885 1.92130 2.33624 2.64785 3.03144 3.11298 3.24302 3.34437 3.63774 3.86115 3.88627 4.10501 4.15929 4.21294 4.34202 4.42209 4.48069 4.53519 4.63923 4.74238 4.79782 4.83868 4.89651 4.91779 4.94148 5.06266 5.25283 5.28792 5.37288 5.41437 5.58667 6.05999 6.21783 6.41404 6.70415 7.12630 7.29793 8.82958 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018305 B = 0.003870 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.229755 B = 7233.307390 C = 8400.831506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.115 6.115 3 S 2.641 3.359 4 O -0.991 6.991 5 O -0.967 6.967 6 C -0.640 4.640 7 C 0.139 3.861 8 H 0.074 0.926 9 C -0.158 4.158 10 C -0.118 4.118 11 C 0.084 3.916 12 N -0.611 5.611 13 C 0.527 3.473 14 O -0.579 6.579 15 C -0.109 4.109 16 C 0.006 3.994 17 C -0.529 4.529 18 H 0.051 0.949 19 C 0.016 3.984 20 N -0.943 5.943 21 Si 0.937 3.063 22 H -0.270 1.270 23 H -0.261 1.261 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.062 0.938 28 H 0.429 0.571 29 H 0.159 0.841 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.011 0.989 40 H 0.007 0.993 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.432 -13.370 -15.387 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.877 5.877 3 S 2.731 3.269 4 O -0.981 6.981 5 O -0.957 6.957 6 C -0.770 4.770 7 C 0.033 3.967 8 H 0.092 0.908 9 C -0.196 4.196 10 C -0.155 4.155 11 C -0.037 4.037 12 N -0.345 5.345 13 C 0.318 3.682 14 O -0.459 6.459 15 C -0.149 4.149 16 C -0.032 4.032 17 C -0.567 4.567 18 H 0.069 0.931 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.761 3.239 22 H -0.195 1.195 23 H -0.185 1.185 24 H -0.203 1.203 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.081 0.919 28 H 0.265 0.735 29 H 0.177 0.823 30 H 0.147 0.853 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.030 0.970 40 H 0.026 0.974 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.142 -12.920 -16.295 25.724 hybrid contribution -1.421 -0.204 0.589 1.551 sum 13.721 -13.124 -15.705 24.641 Atomic orbital electron populations 1.21741 0.77884 1.06146 1.01984 1.55095 1.16505 1.24156 1.91914 1.03995 0.73141 0.73729 0.76027 1.93565 1.79425 1.73583 1.51532 1.93577 1.33232 1.81523 1.87382 1.30992 1.12599 1.08372 1.25019 1.21353 0.97080 0.90069 0.88172 0.90810 1.23248 0.90149 1.03138 1.03071 1.22785 0.99407 0.99010 0.94331 1.22765 0.81762 1.03114 0.96068 1.48649 1.06201 1.60917 1.18757 1.21002 0.81194 0.76430 0.89583 1.90624 1.40562 1.54696 1.60019 1.21478 0.99270 1.02829 0.91333 1.19229 0.93236 0.96163 0.94613 1.21397 0.93641 1.43047 0.98598 0.93109 1.25773 1.02029 0.94328 0.96079 1.70018 1.23839 1.46576 1.17885 0.85857 0.79165 0.79660 0.79201 1.19538 1.18481 1.20279 0.92159 0.86958 0.91949 0.73500 0.82324 0.85320 0.88235 0.87532 0.89851 0.86170 0.89167 0.89154 0.88173 0.87995 0.97012 0.97414 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 11.03 127.77 1.41 2.33 16 2 N -1.11 -15.87 6.08 -206.53 -1.25 -17.13 16 3 S 2.64 52.08 5.05 -56.49 -0.29 51.80 16 4 O -0.99 -27.84 17.73 -127.65 -2.26 -30.10 16 5 O -0.97 -20.81 16.71 -127.65 -2.13 -22.95 16 6 C -0.64 -13.02 5.44 71.98 0.39 -12.62 16 7 C 0.14 3.17 2.93 45.34 0.13 3.30 16 8 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 9 C -0.16 -2.45 5.25 31.78 0.17 -2.29 16 10 C -0.12 -1.45 7.09 31.98 0.23 -1.22 16 11 C 0.08 1.45 6.65 86.86 0.58 2.03 16 12 N -0.61 -15.87 3.06 -788.03 -2.41 -18.29 16 13 C 0.53 18.74 7.59 87.66 0.67 19.41 16 14 O -0.58 -25.08 15.22 -3.05 -0.05 -25.13 16 15 C -0.11 -4.10 4.73 29.85 0.14 -3.96 16 16 C 0.01 0.27 3.33 29.85 0.10 0.37 16 17 C -0.53 -30.15 9.66 25.60 0.25 -29.90 16 18 H 0.05 3.04 7.99 -2.92 -0.02 3.02 16 19 C 0.02 0.93 5.47 84.65 0.46 1.39 16 20 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 21 Si 0.94 46.26 27.47 68.60 1.88 48.15 16 22 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 25 H 0.06 0.94 8.04 -2.38 -0.02 0.92 16 26 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.86 7.53 -2.38 -0.02 0.84 16 28 H 0.43 4.04 8.92 -96.75 -0.86 3.17 16 29 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.13 3.14 6.46 -2.39 -0.02 3.13 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.39 7.21 -2.39 -0.02 1.38 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.09 1.50 7.51 -2.39 -0.02 1.48 16 36 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.10 3.44 7.77 -2.39 -0.02 3.42 16 38 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 39 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 40 H 0.01 0.38 7.53 -2.39 -0.02 0.37 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -82.18 344.76 -1.58 -83.76 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.11 Total: 9.21 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 4.52 Total: -21.15 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -3.37 Total: -93.59 kcal Atomic # 8 Polarization: -73.73 SS G_CDS: -4.44 Total: -78.18 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.15 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.29 Total: 51.80 kcal Total: -82.18 -1.58 -83.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.624 kcal (2) G-P(sol) polarization free energy of solvation -82.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds