Wall clock time and date at job start Fri Apr 10 2020 17:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47187 * 2 1 4 4 C 1.50695 * 109.46917 * 120.00282 * 2 1 3 5 5 O 1.21282 * 120.00172 * 99.99892 * 4 2 1 6 6 N 1.34773 * 120.00038 * 279.99880 * 4 2 1 7 7 C 1.46504 * 120.00182 * 180.02562 * 6 4 2 8 8 C 1.46496 * 120.00119 * 359.97438 * 6 4 2 9 9 S 1.81403 * 109.46945 * 240.00296 * 2 1 3 10 10 O 1.42105 * 110.53895 * 308.37543 * 9 2 1 11 11 O 1.42100 * 110.54268 * 171.62904 * 9 2 1 12 12 N 1.65590 * 104.45024 * 60.00026 * 9 2 1 13 13 C 1.46501 * 120.00191 * 65.48499 * 12 9 2 14 14 C 1.53001 * 109.47457 * 165.49522 * 13 12 9 15 15 C 1.50697 * 115.54746 * 56.83677 * 14 13 12 16 16 H 1.08003 * 119.99752 * 265.77480 * 15 14 13 17 17 C 1.37871 * 119.99938 * 85.78505 * 15 14 13 18 18 N 1.31518 * 120.00097 * 184.14135 * 17 15 14 19 19 Si 1.86802 * 120.00126 * 4.13968 * 17 15 14 20 20 H 1.48497 * 109.47130 * 93.88324 * 19 17 15 21 21 H 1.48503 * 109.46762 * 213.88074 * 19 17 15 22 22 H 1.48501 * 109.47124 * 333.87983 * 19 17 15 23 23 C 1.52998 * 117.49824 * 271.16693 * 14 13 12 24 24 C 1.52997 * 117.49765 * 202.51093 * 14 13 12 25 25 H 1.08996 * 109.47096 * 300.00148 * 1 2 3 26 26 H 1.09004 * 109.47052 * 59.99837 * 1 2 3 27 27 H 1.08995 * 109.47365 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46934 * 89.99786 * 7 6 4 29 29 H 1.08993 * 109.47357 * 210.00111 * 7 6 4 30 30 H 1.09002 * 109.47033 * 329.99956 * 7 6 4 31 31 H 1.09003 * 109.47003 * 0.02562 * 8 6 4 32 32 H 1.09002 * 109.47039 * 119.99963 * 8 6 4 33 33 H 1.08999 * 109.47395 * 240.00206 * 8 6 4 34 34 H 0.97006 * 120.00228 * 245.75175 * 12 9 2 35 35 H 1.09000 * 109.47021 * 285.49520 * 13 12 9 36 36 H 1.09000 * 109.46824 * 45.49212 * 13 12 9 37 37 H 0.96996 * 120.00166 * 180.02562 * 18 17 15 38 38 H 1.09005 * 117.49941 * 0.02562 * 23 14 13 39 39 H 1.08999 * 117.49926 * 145.01922 * 23 14 13 40 40 H 1.08998 * 117.49556 * 214.98050 * 24 14 13 41 41 H 1.08998 * 117.50280 * 359.97159 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4063 -1.8617 1.1557 6 7 2.0658 -0.0665 2.4139 7 6 2.5546 -0.7570 3.6100 8 6 1.6145 1.3243 2.5041 9 16 2.1346 -0.8551 -1.4812 10 8 1.5219 -2.1312 -1.6052 11 8 3.5420 -0.7030 -1.6052 12 7 1.5164 0.0192 -2.7443 13 6 1.9537 1.4003 -2.9627 14 6 1.5304 1.8543 -4.3612 15 6 0.0556 1.7605 -4.6563 16 1 -0.3429 0.8828 -5.1434 17 6 -0.7849 2.7953 -4.3046 18 7 -2.0822 2.6800 -4.4876 19 14 -0.0812 4.3611 -3.5681 20 1 0.1504 5.3550 -4.6468 21 1 -1.0399 4.9176 -2.5798 22 1 1.2052 4.0555 -2.8920 23 6 2.5000 1.5872 -5.5142 24 6 2.3050 3.0129 -4.9923 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.6299 -0.6047 3.7034 29 1 2.0530 -0.3569 4.4910 30 1 2.3447 -1.8232 3.5252 31 1 1.2899 1.6654 1.5210 32 1 0.7822 1.3915 3.2048 33 1 2.4352 1.9507 2.8536 34 1 0.8619 -0.3818 -3.3374 35 1 1.4954 2.0488 -2.2160 36 1 3.0387 1.4560 -2.8755 37 1 -2.6735 3.4081 -4.2406 38 1 3.4393 1.0877 -5.2765 39 1 2.0712 1.3441 -6.4863 40 1 1.7479 3.7072 -5.6214 41 1 3.1158 3.4521 -4.4112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331763329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:55 Heat of formation + Delta-G solvation = -71.830804 kcal Electronic energy + Delta-G solvation = -24405.345083 eV Core-core repulsion = 20835.033110 eV Total energy + Delta-G solvation = -3570.311973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27062 -37.50357 -36.76047 -35.97965 -35.57910 -33.88647 -33.10270 -32.20832 -28.34302 -26.70760 -26.33129 -25.03756 -24.34726 -21.72876 -20.26090 -19.34837 -18.68531 -17.92450 -17.08194 -16.61644 -16.56462 -16.07846 -15.58050 -15.46198 -15.02120 -14.46671 -14.10501 -13.77097 -13.56326 -13.23293 -13.03766 -12.91788 -12.72526 -12.65865 -12.64664 -12.41369 -12.25946 -12.02318 -11.76536 -11.67014 -11.65315 -11.19330 -10.97549 -10.62049 -10.52769 -10.22194 -10.20164 -9.61431 -9.33309 -9.08421 -8.95408 -8.59515 -8.56444 -6.23008 -4.27323 0.44012 2.21273 2.60184 3.11134 3.17046 3.27899 3.30195 3.89233 4.18562 4.23808 4.29444 4.67853 4.80462 4.86450 4.93624 4.96183 4.99421 5.05403 5.27501 5.34383 5.43430 5.51587 5.54200 5.61005 5.88132 5.92714 6.01765 6.02948 6.03526 6.14819 6.42775 6.55123 6.68150 6.85648 7.02842 7.05574 7.60934 7.65660 7.69232 8.37306 8.80172 9.39539 10.88028 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.005354 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.784154 B = 5228.270694 C = 5873.100171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.642 4.642 3 H 0.154 0.846 4 C 0.547 3.453 5 O -0.532 6.532 6 N -0.611 5.611 7 C 0.082 3.918 8 C 0.066 3.934 9 S 2.641 3.359 10 O -0.942 6.942 11 O -0.954 6.954 12 N -1.091 6.091 13 C 0.148 3.852 14 C -0.007 4.007 15 C -0.488 4.488 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.893 5.893 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.255 1.255 23 C -0.177 4.177 24 C -0.196 4.196 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.428 0.572 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.159 0.491 14.143 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.749 4.749 3 H 0.172 0.828 4 C 0.333 3.667 5 O -0.409 6.409 6 N -0.344 5.344 7 C -0.060 4.060 8 C -0.077 4.077 9 S 2.727 3.273 10 O -0.932 6.932 11 O -0.944 6.944 12 N -0.855 5.855 13 C 0.022 3.978 14 C -0.010 4.010 15 C -0.525 4.525 16 H 0.099 0.901 17 C -0.123 4.123 18 N -0.529 5.529 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.180 1.180 23 C -0.214 4.214 24 C -0.235 4.235 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.832 -0.696 14.256 15.824 hybrid contribution -0.442 1.743 0.587 1.891 sum 6.390 1.046 14.843 16.194 Atomic orbital electron populations 1.21566 0.86732 1.05099 1.05706 1.31109 1.10082 1.16067 1.17610 0.82830 1.19432 0.77422 0.86014 0.83881 1.90836 1.48197 1.16634 1.85211 1.47556 1.64326 1.14009 1.08514 1.21721 0.99425 0.98968 0.85876 1.22056 1.00300 0.81099 1.04208 1.04303 0.74590 0.73950 0.74489 1.93563 1.77916 1.37141 1.84543 1.93560 1.29503 1.86573 1.84731 1.55315 1.60580 1.25599 1.44009 1.21052 0.96800 0.80551 0.99409 1.19479 0.94374 0.98223 0.88894 1.20215 0.87186 1.05255 1.39861 0.90145 1.24984 0.94461 0.98329 0.94575 1.69903 1.02722 1.32846 1.47455 0.86924 0.79302 0.83927 0.79538 1.20500 1.22157 1.17955 1.22882 1.00388 0.98206 0.99938 1.22990 1.03050 0.91999 1.05417 0.90540 0.88312 0.90078 0.92258 0.90866 0.90081 0.89397 0.91350 0.91454 0.73369 0.92697 0.92374 0.92495 0.90552 0.89395 0.89318 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.79 37.16 0.33 -1.33 16 2 C -0.64 -8.85 2.42 -27.89 -0.07 -8.92 16 3 H 0.15 1.66 6.62 -51.92 -0.34 1.31 16 4 C 0.55 8.06 6.85 -10.99 -0.08 7.99 16 5 O -0.53 -9.76 15.42 4.23 0.07 -9.70 16 6 N -0.61 -6.71 3.27 -189.52 -0.62 -7.33 16 7 C 0.08 0.73 10.48 59.85 0.63 1.35 16 8 C 0.07 0.50 9.95 59.84 0.60 1.10 16 9 S 2.64 46.83 4.23 -107.50 -0.45 46.37 16 10 O -0.94 -19.25 17.71 -60.10 -1.06 -20.32 16 11 O -0.95 -19.17 17.49 -57.54 -1.01 -20.18 16 12 N -1.09 -19.40 5.49 -10.61 -0.06 -19.45 16 13 C 0.15 2.72 5.75 -4.04 -0.02 2.70 16 14 C -0.01 -0.15 0.98 -155.66 -0.15 -0.30 16 15 C -0.49 -12.05 8.67 -34.44 -0.30 -12.35 16 16 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 17 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.89 -24.79 13.96 55.43 0.77 -24.01 16 19 Si 0.88 19.28 24.94 -169.99 -4.24 15.04 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.26 -5.09 5.58 56.52 0.32 -4.78 16 23 C -0.18 -3.39 9.93 -26.70 -0.27 -3.65 16 24 C -0.20 -3.81 7.34 -26.70 -0.20 -4.01 16 25 H 0.08 0.75 6.99 -51.93 -0.36 0.39 16 26 H 0.10 1.28 7.91 -51.93 -0.41 0.87 16 27 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.08 0.82 7.42 -51.93 -0.39 0.43 16 31 H 0.09 0.66 4.79 -51.93 -0.25 0.41 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.43 7.82 8.02 -34.47 -0.28 7.55 16 35 H 0.05 0.93 6.87 -51.93 -0.36 0.58 16 36 H 0.06 1.00 7.65 -51.93 -0.40 0.60 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.09 1.80 7.06 -51.93 -0.37 1.43 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -33.73 343.69 -7.22 -40.95 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.17 Total: 8.94 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 0.37 Total: -15.49 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.09 Total: -50.80 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -2.01 Total: -50.19 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.24 Total: 15.04 kcal Atomic # 16 Polarization: 46.83 SS G_CDS: -0.45 Total: 46.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.73 -7.22 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331763329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.878 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds