Wall clock time and date at job start Fri Apr 10 2020 17:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47187 * 2 1 4 4 C 1.50695 * 109.46917 * 120.00282 * 2 1 3 5 5 O 1.21282 * 120.00172 * 99.99892 * 4 2 1 6 6 N 1.34773 * 120.00038 * 279.99880 * 4 2 1 7 7 C 1.46504 * 120.00182 * 180.02562 * 6 4 2 8 8 C 1.46496 * 120.00119 * 359.97438 * 6 4 2 9 9 S 1.81403 * 109.46945 * 240.00296 * 2 1 3 10 10 O 1.42105 * 110.53895 * 308.37543 * 9 2 1 11 11 O 1.42100 * 110.54268 * 171.62904 * 9 2 1 12 12 N 1.65590 * 104.45024 * 60.00026 * 9 2 1 13 13 C 1.46501 * 120.00191 * 65.48499 * 12 9 2 14 14 C 1.53001 * 109.47457 * 165.49522 * 13 12 9 15 15 C 1.50697 * 115.54746 * 56.83677 * 14 13 12 16 16 H 1.08003 * 119.99752 * 265.77480 * 15 14 13 17 17 C 1.37871 * 119.99938 * 85.78505 * 15 14 13 18 18 N 1.31518 * 120.00097 * 184.14135 * 17 15 14 19 19 Si 1.86802 * 120.00126 * 4.13968 * 17 15 14 20 20 H 1.48497 * 109.47130 * 93.88324 * 19 17 15 21 21 H 1.48503 * 109.46762 * 213.88074 * 19 17 15 22 22 H 1.48501 * 109.47124 * 333.87983 * 19 17 15 23 23 C 1.52998 * 117.49824 * 271.16693 * 14 13 12 24 24 C 1.52997 * 117.49765 * 202.51093 * 14 13 12 25 25 H 1.08996 * 109.47096 * 300.00148 * 1 2 3 26 26 H 1.09004 * 109.47052 * 59.99837 * 1 2 3 27 27 H 1.08995 * 109.47365 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46934 * 89.99786 * 7 6 4 29 29 H 1.08993 * 109.47357 * 210.00111 * 7 6 4 30 30 H 1.09002 * 109.47033 * 329.99956 * 7 6 4 31 31 H 1.09003 * 109.47003 * 0.02562 * 8 6 4 32 32 H 1.09002 * 109.47039 * 119.99963 * 8 6 4 33 33 H 1.08999 * 109.47395 * 240.00206 * 8 6 4 34 34 H 0.97006 * 120.00228 * 245.75175 * 12 9 2 35 35 H 1.09000 * 109.47021 * 285.49520 * 13 12 9 36 36 H 1.09000 * 109.46824 * 45.49212 * 13 12 9 37 37 H 0.96996 * 120.00166 * 180.02562 * 18 17 15 38 38 H 1.09005 * 117.49941 * 0.02562 * 23 14 13 39 39 H 1.08999 * 117.49926 * 145.01922 * 23 14 13 40 40 H 1.08998 * 117.49556 * 214.98050 * 24 14 13 41 41 H 1.08998 * 117.50280 * 359.97159 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4063 -1.8617 1.1557 6 7 2.0658 -0.0665 2.4139 7 6 2.5546 -0.7570 3.6100 8 6 1.6145 1.3243 2.5041 9 16 2.1346 -0.8551 -1.4812 10 8 1.5219 -2.1312 -1.6052 11 8 3.5420 -0.7030 -1.6052 12 7 1.5164 0.0192 -2.7443 13 6 1.9537 1.4003 -2.9627 14 6 1.5304 1.8543 -4.3612 15 6 0.0556 1.7605 -4.6563 16 1 -0.3429 0.8828 -5.1434 17 6 -0.7849 2.7953 -4.3046 18 7 -2.0822 2.6800 -4.4876 19 14 -0.0812 4.3611 -3.5681 20 1 0.1504 5.3550 -4.6468 21 1 -1.0399 4.9176 -2.5798 22 1 1.2052 4.0555 -2.8920 23 6 2.5000 1.5872 -5.5142 24 6 2.3050 3.0129 -4.9923 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.6299 -0.6047 3.7034 29 1 2.0530 -0.3569 4.4910 30 1 2.3447 -1.8232 3.5252 31 1 1.2899 1.6654 1.5210 32 1 0.7822 1.3915 3.2048 33 1 2.4352 1.9507 2.8536 34 1 0.8619 -0.3818 -3.3374 35 1 1.4954 2.0488 -2.2160 36 1 3.0387 1.4560 -2.8755 37 1 -2.6735 3.4081 -4.2406 38 1 3.4393 1.0877 -5.2765 39 1 2.0712 1.3441 -6.4863 40 1 1.7479 3.7072 -5.6214 41 1 3.1158 3.4521 -4.4112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331763329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:55 Heat of formation + Delta-G solvation = -98.990783 kcal Electronic energy + Delta-G solvation = -24406.522828 eV Core-core repulsion = 20835.033110 eV Total energy + Delta-G solvation = -3571.489718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31093 -39.06992 -38.24422 -37.12987 -36.86723 -35.18104 -34.32786 -34.11483 -29.00269 -28.07571 -27.54655 -26.65285 -25.36080 -23.26602 -21.41234 -20.95133 -19.97323 -19.08591 -18.44810 -18.12011 -17.83092 -17.20388 -16.91110 -16.72237 -16.53818 -15.79596 -15.31462 -14.94675 -14.74230 -14.69555 -14.33386 -14.29398 -14.12217 -13.60513 -13.39776 -13.37514 -13.27711 -13.23588 -13.18805 -13.07135 -12.90587 -12.89010 -12.68248 -12.07452 -11.89140 -11.76149 -11.34418 -11.31407 -10.98525 -10.68544 -10.31149 -10.07881 -9.90582 -8.18542 -6.27405 -0.91812 1.13860 1.44954 1.49906 1.59269 1.62121 1.88873 2.47108 2.71324 3.03350 3.05089 3.15785 3.28523 3.66055 3.75026 4.03604 4.19114 4.34165 4.39395 4.44409 4.46692 4.49897 4.51295 4.57925 4.65274 4.70055 4.86861 4.87740 4.93089 5.04387 5.09625 5.17081 5.26928 5.50439 5.53512 5.77702 5.97197 6.15699 6.40956 6.68822 6.81403 7.43001 8.95972 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017476 B = 0.005354 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.784154 B = 5228.270694 C = 5873.100171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.621 4.621 3 H 0.193 0.807 4 C 0.534 3.466 5 O -0.581 6.581 6 N -0.601 5.601 7 C 0.075 3.925 8 C 0.052 3.948 9 S 2.640 3.360 10 O -0.982 6.982 11 O -0.984 6.984 12 N -1.095 6.095 13 C 0.146 3.854 14 C -0.029 4.029 15 C -0.481 4.481 16 H 0.034 0.966 17 C 0.026 3.974 18 N -0.946 5.946 19 Si 0.930 3.070 20 H -0.284 1.284 21 H -0.296 1.296 22 H -0.213 1.213 23 C -0.174 4.174 24 C -0.186 4.186 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.423 0.577 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.264 0.736 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.714 3.195 16.784 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.733 4.733 3 H 0.210 0.790 4 C 0.320 3.680 5 O -0.463 6.463 6 N -0.332 5.332 7 C -0.067 4.067 8 C -0.089 4.089 9 S 2.732 3.268 10 O -0.972 6.972 11 O -0.974 6.974 12 N -0.857 5.857 13 C 0.020 3.980 14 C -0.032 4.032 15 C -0.519 4.519 16 H 0.052 0.948 17 C -0.172 4.172 18 N -0.585 5.585 19 Si 0.755 3.245 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.135 1.135 23 C -0.212 4.212 24 C -0.224 4.224 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.259 0.741 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.434 2.011 16.882 18.978 hybrid contribution -0.971 0.865 -0.212 1.318 sum 7.463 2.877 16.670 18.489 Atomic orbital electron populations 1.21653 0.85662 1.04832 1.07157 1.30809 1.10801 1.17122 1.14522 0.79007 1.19601 0.77637 0.85656 0.85144 1.90822 1.50751 1.18736 1.85983 1.47740 1.62522 1.15260 1.07644 1.21940 1.00455 0.98099 0.86199 1.22429 1.02147 0.79025 1.05266 1.03976 0.73808 0.73612 0.75431 1.93510 1.78307 1.39716 1.85632 1.93512 1.31236 1.86900 1.85719 1.55221 1.60352 1.25529 1.44575 1.21146 0.98157 0.80709 0.98023 1.19443 0.92212 1.00602 0.90917 1.20275 0.89679 1.03442 1.38484 0.94752 1.25784 0.94409 1.01752 0.95234 1.70062 1.04522 1.34052 1.49883 0.86034 0.80388 0.79241 0.78852 1.21035 1.22349 1.13458 1.22910 1.00600 0.98765 0.98878 1.23069 1.03047 0.91477 1.04767 0.87028 0.88801 0.91389 0.91448 0.87201 0.92039 0.89119 0.88891 0.89182 0.74068 0.90720 0.90450 0.92695 0.88540 0.90566 0.90447 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.79 71.98 0.63 -2.45 16 2 C -0.62 -15.70 2.42 29.85 0.07 -15.63 16 3 H 0.19 3.29 6.62 -2.39 -0.02 3.27 16 4 C 0.53 14.82 6.85 87.66 0.60 15.42 16 5 O -0.58 -21.48 15.42 -1.77 -0.03 -21.50 16 6 N -0.60 -11.21 3.27 -871.90 -2.85 -14.07 16 7 C 0.07 1.11 10.48 127.77 1.34 2.45 16 8 C 0.05 0.52 9.95 127.77 1.27 1.79 16 9 S 2.64 92.92 4.23 -56.49 -0.24 92.68 16 10 O -0.98 -41.61 17.71 -125.20 -2.22 -43.83 16 11 O -0.98 -39.00 17.49 -127.65 -2.23 -41.23 16 12 N -1.10 -38.27 5.49 -187.49 -1.03 -39.30 16 13 C 0.15 4.94 5.75 86.38 0.50 5.43 16 14 C -0.03 -1.17 0.98 -52.93 -0.05 -1.23 16 15 C -0.48 -24.09 8.67 25.60 0.22 -23.87 16 16 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 17 C 0.03 1.34 5.47 84.65 0.46 1.81 16 18 N -0.95 -53.93 13.96 21.45 0.30 -53.63 16 19 Si 0.93 37.93 24.94 68.60 1.71 39.64 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.30 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.21 -7.14 5.58 99.48 0.56 -6.58 16 23 C -0.17 -6.38 9.93 30.62 0.30 -6.07 16 24 C -0.19 -6.58 7.34 30.62 0.22 -6.35 16 25 H 0.11 1.77 6.99 -2.39 -0.02 1.75 16 26 H 0.09 2.28 7.91 -2.38 -0.02 2.26 16 27 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.11 0.82 8.07 -2.39 -0.02 0.80 16 30 H 0.06 1.18 7.42 -2.39 -0.02 1.16 16 31 H 0.09 0.87 4.79 -2.39 -0.01 0.85 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.42 15.92 8.02 -96.74 -0.78 15.14 16 35 H 0.07 2.20 6.87 -2.39 -0.02 2.19 16 36 H 0.08 2.35 7.65 -2.39 -0.02 2.33 16 37 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 38 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 39 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.08 2.94 7.06 -2.39 -0.02 2.92 16 41 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -77.19 343.69 -0.90 -78.10 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.11 Total: 31.85 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 5.57 Total: -28.70 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.58 Total: -107.00 kcal Atomic # 8 Polarization: -102.09 SS G_CDS: -4.48 Total: -106.57 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.71 Total: 39.64 kcal Atomic # 16 Polarization: 92.92 SS G_CDS: -0.24 Total: 92.68 kcal Total: -77.19 -0.90 -78.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331763329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.894 kcal (2) G-P(sol) polarization free energy of solvation -77.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds