Wall clock time and date at job start Fri Apr 10 2020 17:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 119.99818 * 2 1 4 4 C 1.50695 * 109.47299 * 275.00140 * 3 2 1 5 5 H 1.08005 * 119.99906 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00382 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99970 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00577 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46914 * 89.99831 * 8 6 4 10 10 H 1.48494 * 109.47727 * 210.00158 * 8 6 4 11 11 H 1.48501 * 109.46977 * 330.00336 * 8 6 4 12 12 S 1.65600 * 120.00272 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40109 * 156.46034 * 12 2 1 14 14 O 1.42094 * 106.40156 * 23.54163 * 12 2 1 15 15 N 1.65593 * 107.21886 * 269.99893 * 12 2 1 16 16 C 1.46501 * 120.00000 * 65.27886 * 15 12 2 17 17 H 1.09003 * 110.43481 * 352.30023 * 16 15 12 18 18 C 1.54815 * 110.48850 * 229.62115 * 16 15 12 19 19 C 1.54991 * 102.09116 * 220.44153 * 18 16 15 20 20 O 1.44381 * 103.49134 * 37.02211 * 19 18 16 21 21 C 1.43743 * 106.97345 * 319.93779 * 20 19 18 22 22 H 1.09004 * 109.88217 * 267.09208 * 21 20 19 23 23 C 1.53001 * 109.87588 * 145.94081 * 21 20 19 24 24 C 1.53001 * 117.49881 * 136.13260 * 23 21 20 25 25 C 1.52998 * 117.50124 * 67.47344 * 23 21 20 26 26 H 1.09003 * 109.46895 * 269.99901 * 1 2 3 27 27 H 1.08994 * 109.47276 * 29.99654 * 1 2 3 28 28 H 1.09001 * 109.47109 * 149.99973 * 1 2 3 29 29 H 1.08998 * 109.47124 * 35.00050 * 3 2 1 30 30 H 1.08996 * 109.46893 * 155.00009 * 3 2 1 31 31 H 0.97006 * 120.00852 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00208 * 244.99958 * 15 12 2 33 33 H 1.09009 * 110.90265 * 338.63871 * 18 16 15 34 34 H 1.08997 * 110.90911 * 102.24005 * 18 16 15 35 35 H 1.09000 * 110.61877 * 278.52035 * 19 18 16 36 36 H 1.09000 * 110.75559 * 155.58477 * 19 18 16 37 37 H 1.08999 * 115.54819 * 281.80263 * 23 21 20 38 38 H 1.09001 * 117.49631 * 0.02562 * 24 23 21 39 39 H 1.09004 * 117.49519 * 145.01504 * 24 23 21 40 40 H 1.09000 * 117.50367 * 214.98037 * 25 23 21 41 41 H 1.09002 * 117.50036 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4153 5 1 1.9289 1.1936 -2.2332 6 6 2.9996 2.9510 -1.6663 7 7 3.5024 3.6475 -0.6705 8 14 3.1786 3.5667 -3.4208 9 1 2.0177 4.4266 -3.7645 10 1 4.4315 4.3542 -3.5437 11 1 3.2288 2.4087 -4.3491 12 16 2.2930 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5439 14 8 1.4115 -2.4067 -0.5434 15 7 2.5382 -1.8579 1.5825 16 6 1.3952 -2.1827 2.4395 17 1 0.4594 -1.9660 1.9241 18 6 1.4770 -1.3989 3.7721 19 6 1.0217 -2.4630 4.8030 20 8 1.5936 -3.6884 4.2972 21 6 1.4451 -3.6621 2.8677 22 1 0.5197 -4.1621 2.5818 23 6 2.6393 -4.3546 2.2078 24 6 2.3490 -5.3160 1.0535 25 6 2.7839 -5.8636 2.4151 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6501 2.0043 0.5894 30 1 3.1857 1.1178 0.4343 31 1 3.9652 4.4816 -0.8470 32 1 3.4389 -1.8950 1.9408 33 1 2.4990 -1.0764 3.9714 34 1 0.7963 -0.5477 3.7652 35 1 -0.0659 -2.5298 4.8307 36 1 1.4165 -2.2353 5.7931 37 1 3.5538 -3.7642 2.1532 38 1 1.3073 -5.4547 0.7639 39 1 3.0729 -5.3582 0.2396 40 1 3.7936 -6.2660 2.4965 41 1 2.0281 -6.3631 3.0212 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340602912.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:39 Heat of formation + Delta-G solvation = -111.146234 kcal Electronic energy + Delta-G solvation = -24559.490917 eV Core-core repulsion = 20987.474100 eV Total energy + Delta-G solvation = -3572.016818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.92890 -38.24256 -37.53086 -37.21471 -36.81371 -35.81661 -34.50616 -31.42549 -29.67520 -29.26528 -26.77449 -24.38320 -24.17805 -23.34884 -22.65187 -21.41060 -20.26748 -19.05024 -18.47671 -18.36500 -17.71617 -17.16252 -16.89677 -16.65526 -16.14918 -15.74289 -15.39225 -15.06364 -14.95463 -14.62613 -14.07031 -13.96548 -13.94404 -13.46111 -13.30809 -13.15005 -13.05410 -12.97433 -12.90543 -12.48375 -12.44503 -12.42748 -12.37628 -12.34274 -11.98018 -11.80804 -11.74357 -11.20152 -11.08255 -10.79559 -10.59892 -10.33381 -9.78712 -8.21220 -6.32945 -0.31773 1.38315 1.40872 1.51183 2.02757 2.39794 2.58496 2.66367 3.09937 3.23667 3.44819 3.53562 3.55918 3.83015 4.03936 4.07560 4.11712 4.14961 4.24748 4.34374 4.44147 4.51110 4.70386 4.79480 4.80852 4.89511 4.92993 5.01177 5.06633 5.07637 5.19081 5.21324 5.24522 5.27816 5.45757 5.69214 5.83727 5.94705 6.06981 6.12570 6.75376 7.36125 8.86201 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.004505 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.117159 B = 6214.418730 C = 6743.992260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.003 6.003 3 C 0.273 3.727 4 C -0.551 4.551 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.275 1.275 12 S 2.796 3.204 13 O -1.014 7.014 14 O -0.998 6.998 15 N -1.104 6.104 16 C 0.124 3.876 17 H 0.109 0.891 18 C -0.162 4.162 19 C 0.045 3.955 20 O -0.383 6.383 21 C 0.101 3.899 22 H 0.083 0.917 23 C -0.166 4.166 24 C -0.179 4.179 25 C -0.158 4.158 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.015 0.985 31 H 0.267 0.733 32 H 0.420 0.580 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 -13.254 11.605 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.845 5.845 3 C 0.149 3.851 4 C -0.590 4.590 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.200 1.200 12 S 2.804 3.196 13 O -0.998 6.998 14 O -0.981 6.981 15 N -0.865 5.865 16 C 0.016 3.984 17 H 0.127 0.873 18 C -0.202 4.202 19 C -0.031 4.031 20 O -0.302 6.302 21 C 0.041 3.959 22 H 0.101 0.899 23 C -0.185 4.185 24 C -0.216 4.216 25 C -0.194 4.194 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.256 0.744 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.881 -13.733 10.914 18.843 hybrid contribution 0.653 1.052 -0.730 1.438 sum -6.229 -12.681 10.184 17.416 Atomic orbital electron populations 1.21642 0.78100 1.03719 1.02634 1.57497 1.15712 1.21919 1.89324 1.18586 0.90395 0.80318 0.95761 1.21845 1.36278 1.06596 0.94282 0.93144 1.25714 0.94770 0.96783 1.01346 1.69997 1.37884 1.15693 1.32738 0.85615 0.78189 0.78313 0.79975 1.18936 1.20371 1.20040 1.01310 0.72199 0.72542 0.73561 1.93575 1.43222 1.85529 1.77509 1.93516 1.67372 1.59677 1.77533 1.55908 1.15284 1.84461 1.30894 1.22261 0.88739 0.94552 0.92850 0.87278 1.23549 1.04263 0.99423 0.92932 1.23719 0.99154 0.82012 0.98257 1.88906 1.81885 1.40547 1.18870 1.22601 0.97002 0.94832 0.81471 0.89922 1.22275 1.00061 0.93086 1.03089 1.22998 1.02925 1.03571 0.92102 1.22945 1.03337 0.94685 0.98482 0.90567 0.91141 0.90548 0.95121 0.96700 0.92361 0.74372 0.89873 0.87902 0.90136 0.87201 0.87897 0.88315 0.89199 0.87946 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.62 10.24 127.77 1.31 3.92 16 2 N -1.00 -39.78 3.23 -543.23 -1.75 -41.53 16 3 C 0.27 13.59 5.08 85.63 0.43 14.03 16 4 C -0.55 -31.06 9.38 25.60 0.24 -30.82 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.01 0.76 5.46 84.65 0.46 1.22 16 7 N -0.92 -53.77 13.29 21.44 0.28 -53.49 16 8 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 9 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 S 2.80 106.74 5.97 -56.49 -0.34 106.41 16 13 O -1.01 -49.04 17.11 -128.00 -2.19 -51.23 16 14 O -1.00 -38.51 16.44 -128.00 -2.10 -40.61 16 15 N -1.10 -30.80 4.02 -165.27 -0.67 -31.46 16 16 C 0.12 2.76 3.65 45.98 0.17 2.93 16 17 H 0.11 2.25 7.14 -2.39 -0.02 2.23 16 18 C -0.16 -2.89 6.88 31.89 0.22 -2.67 16 19 C 0.04 0.69 7.72 72.66 0.56 1.25 16 20 O -0.38 -8.22 11.18 -148.98 -1.67 -9.88 16 21 C 0.10 2.20 3.58 30.96 0.11 2.31 16 22 H 0.08 1.69 7.99 -2.38 -0.02 1.67 16 23 C -0.17 -3.93 4.63 -10.79 -0.05 -3.98 16 24 C -0.18 -4.23 10.19 30.62 0.31 -3.92 16 25 C -0.16 -3.19 10.25 30.62 0.31 -2.88 16 26 H 0.08 1.76 7.87 -2.39 -0.02 1.74 16 27 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 28 H 0.08 2.22 7.02 -2.39 -0.02 2.20 16 29 H 0.03 1.53 8.11 -2.39 -0.02 1.52 16 30 H 0.02 0.81 7.61 -2.39 -0.02 0.79 16 31 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 32 H 0.42 10.83 7.76 -96.75 -0.75 10.08 16 33 H 0.08 1.59 8.06 -2.38 -0.02 1.57 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.10 2.51 6.39 -2.39 -0.02 2.50 16 38 H 0.10 2.29 8.10 -2.39 -0.02 2.27 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -71.55 348.25 -2.05 -73.59 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.28 Total: 20.31 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 4.08 Total: -18.61 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -2.13 Total: -126.48 kcal Atomic # 8 Polarization: -95.77 SS G_CDS: -5.96 Total: -101.73 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 106.74 SS G_CDS: -0.34 Total: 106.41 kcal Total: -71.55 -2.05 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340602912.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.555 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds