Wall clock time and date at job start Fri Apr 10 2020 17:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 119.99950 * 2 1 4 4 C 1.50702 * 109.46957 * 274.99534 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 S 1.65604 * 119.99536 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40380 * 23.54255 * 12 2 1 14 14 O 1.42101 * 106.39783 * 156.46152 * 12 2 1 15 15 N 1.65603 * 107.21518 * 270.00010 * 12 2 1 16 16 C 1.46497 * 119.99961 * 65.00536 * 15 12 2 17 17 H 1.08998 * 110.98663 * 20.79919 * 16 15 12 18 18 C 1.55298 * 111.12397 * 256.55144 * 16 15 12 19 19 C 1.54384 * 102.25086 * 207.94816 * 18 16 15 20 20 O 1.43236 * 107.59054 * 21.35892 * 19 18 16 21 21 C 1.43648 * 109.96889 * 1.70965 * 20 19 18 22 22 H 1.09002 * 110.39174 * 94.53190 * 21 20 19 23 23 C 1.53000 * 110.30902 * 216.65288 * 21 20 19 24 24 C 1.53004 * 117.49756 * 4.46409 * 23 21 20 25 25 C 1.52995 * 117.50094 * 295.80584 * 23 21 20 26 26 H 1.09007 * 109.47205 * 90.00530 * 1 2 3 27 27 H 1.08999 * 109.47284 * 210.00239 * 1 2 3 28 28 H 1.08996 * 109.47487 * 330.00317 * 1 2 3 29 29 H 1.09004 * 109.47166 * 154.99800 * 3 2 1 30 30 H 1.08994 * 109.47507 * 34.99507 * 3 2 1 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 0.96996 * 119.99486 * 244.99958 * 15 12 2 33 33 H 1.09001 * 110.85073 * 326.14103 * 18 16 15 34 34 H 1.09004 * 110.84395 * 89.76430 * 18 16 15 35 35 H 1.09008 * 109.83231 * 261.84342 * 19 18 16 36 36 H 1.09001 * 109.90058 * 140.91710 * 19 18 16 37 37 H 1.08998 * 115.54879 * 150.12972 * 23 21 20 38 38 H 1.08998 * 117.49620 * 359.97438 * 24 23 21 39 39 H 1.08999 * 117.49447 * 145.01841 * 24 23 21 40 40 H 1.09005 * 117.49734 * 214.97721 * 25 23 21 41 41 H 1.09004 * 117.50190 * 359.96961 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 2.9953 2.9534 -1.6660 7 7 3.4981 3.6499 -0.6701 8 14 3.1670 3.5730 -3.4197 9 1 2.5198 2.6131 -4.3496 10 1 2.5107 4.8995 -3.5425 11 1 4.6067 3.6996 -3.7613 12 16 2.2929 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5827 16 6 1.3945 -2.1768 2.4411 17 1 0.5227 -2.4474 1.8455 18 6 1.0728 -1.0016 3.4041 19 6 0.4348 -1.7291 4.6071 20 8 0.8600 -3.0961 4.5615 21 6 1.7498 -3.2963 3.4517 22 1 2.7866 -3.1999 3.7740 23 6 1.5154 -4.6720 2.8245 24 6 0.3649 -5.5145 3.3792 25 6 1.8140 -5.9010 3.6853 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 3.1858 1.1176 0.4344 30 1 1.6501 2.0042 0.5893 31 1 3.9583 4.4854 -0.8464 32 1 3.4386 -1.8952 1.9408 33 1 1.9844 -0.4840 3.7027 34 1 0.3640 -0.3099 2.9487 35 1 -0.6518 -1.6773 4.5367 36 1 0.7673 -1.2692 5.5377 37 1 1.7220 -4.7432 1.7567 38 1 -0.2246 -5.0887 4.1911 39 1 -0.1850 -6.1402 2.6762 40 1 2.2167 -6.7810 3.1837 41 1 2.1779 -5.7296 4.6984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340602915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:43 Heat of formation + Delta-G solvation = -94.178281 kcal Electronic energy + Delta-G solvation = -24323.217855 eV Core-core repulsion = 20751.936823 eV Total energy + Delta-G solvation = -3571.281032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06631 -36.68150 -36.56000 -35.56300 -35.22723 -34.85955 -32.46750 -30.55727 -28.56652 -27.83076 -25.11512 -23.55168 -22.44826 -22.34908 -21.68740 -20.36755 -19.13876 -17.53005 -17.06918 -16.61372 -16.59261 -16.24625 -15.36937 -15.15946 -15.05148 -14.43839 -14.12392 -14.00511 -13.47592 -13.30441 -13.03445 -12.84020 -12.46010 -12.14855 -12.02617 -11.68413 -11.65829 -11.52139 -11.49423 -11.28244 -11.24234 -11.13803 -11.08175 -10.72936 -10.55753 -10.42024 -10.26703 -10.04799 -9.79169 -9.68149 -9.33360 -8.47448 -8.12067 -6.09462 -4.13159 1.13756 3.27784 3.29409 3.37140 3.42745 3.66002 3.71182 4.06179 4.32738 4.42484 4.45082 4.77516 4.83981 4.85155 4.90416 4.97925 5.06949 5.16416 5.25405 5.40865 5.41711 5.55834 5.57858 5.60571 5.75424 5.81620 5.85635 5.96967 6.05281 6.10473 6.16411 6.27804 6.46323 6.82894 6.99638 7.19405 7.36006 7.55619 7.88198 8.17115 8.89496 9.52325 10.99183 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.027473 B = 0.004125 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.946645 B = 6786.005212 C = 7201.363027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.995 5.995 3 C 0.258 3.742 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.781 3.219 13 O -0.995 6.995 14 O -0.961 6.961 15 N -1.120 6.120 16 C 0.129 3.871 17 H 0.109 0.891 18 C -0.176 4.176 19 C 0.053 3.947 20 O -0.375 6.375 21 C 0.110 3.890 22 H 0.081 0.919 23 C -0.163 4.163 24 C -0.165 4.165 25 C -0.176 4.176 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.414 0.586 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 -12.631 11.691 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.838 5.838 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.788 3.212 13 O -0.978 6.978 14 O -0.945 6.945 15 N -0.878 5.878 16 C 0.020 3.980 17 H 0.127 0.873 18 C -0.215 4.215 19 C -0.024 4.024 20 O -0.294 6.294 21 C 0.051 3.949 22 H 0.099 0.901 23 C -0.182 4.182 24 C -0.202 4.202 25 C -0.212 4.212 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.247 0.753 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.062 -13.105 11.030 18.170 hybrid contribution 0.511 0.995 -0.592 1.266 sum -5.551 -12.110 10.438 16.924 Atomic orbital electron populations 1.21248 0.80134 1.00954 1.01673 1.57618 1.14183 1.23372 1.88626 1.19069 0.90990 0.78583 0.97726 1.21532 1.36114 1.06161 0.92995 0.92125 1.24931 0.95095 0.96503 0.97507 1.69925 1.37506 1.15219 1.30879 0.86456 0.78002 0.78514 0.84567 1.19635 1.20961 1.20787 1.02015 0.73459 0.72935 0.72756 1.93543 1.67559 1.60174 1.76555 1.93653 1.40641 1.84818 1.75360 1.56229 1.13863 1.85564 1.32114 1.22313 0.89540 0.93671 0.92512 0.87284 1.23639 1.03094 0.98765 0.96025 1.23075 0.99293 0.81777 0.98217 1.88399 1.65135 1.27221 1.48614 1.22576 0.94048 0.92912 0.85395 0.90145 1.22484 1.05847 0.90479 0.99340 1.22884 0.91325 1.02322 1.03621 1.22939 0.99444 0.98083 1.00782 0.92979 0.93201 0.91386 0.94462 0.94677 0.92741 0.75268 0.89348 0.88974 0.91003 0.91164 0.86343 0.87678 0.89070 0.88948 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 10.33 59.85 0.62 2.35 16 2 N -0.99 -19.63 3.23 -123.06 -0.40 -20.02 16 3 C 0.26 6.25 5.12 -5.20 -0.03 6.22 16 4 C -0.53 -14.65 9.38 -34.44 -0.32 -14.98 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 S 2.78 52.74 6.03 -107.50 -0.65 52.09 16 13 O -0.99 -19.92 16.62 -57.17 -0.95 -20.87 16 14 O -0.96 -22.37 17.11 -57.17 -0.98 -23.35 16 15 N -1.12 -15.54 5.68 -2.99 -0.02 -15.56 16 16 C 0.13 1.55 3.20 -65.69 -0.21 1.34 16 17 H 0.11 1.37 6.89 -51.93 -0.36 1.01 16 18 C -0.18 -1.86 6.72 -24.79 -0.17 -2.03 16 19 C 0.05 0.51 7.79 37.88 0.30 0.80 16 20 O -0.37 -4.21 9.47 -35.23 -0.33 -4.55 16 21 C 0.11 1.23 3.48 -25.70 -0.09 1.14 16 22 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 23 C -0.16 -1.82 5.71 -90.62 -0.52 -2.33 16 24 C -0.16 -1.67 9.89 -26.69 -0.26 -1.93 16 25 C -0.18 -1.70 10.24 -26.70 -0.27 -1.97 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.66 7.16 -51.93 -0.37 0.29 16 28 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 29 H 0.04 0.96 7.61 -51.93 -0.40 0.56 16 30 H 0.04 0.85 7.96 -51.93 -0.41 0.44 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.41 5.00 8.82 -34.47 -0.30 4.69 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.12 1.42 8.13 -51.93 -0.42 1.00 16 38 H 0.10 1.09 7.07 -51.93 -0.37 0.73 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -33.17 350.49 -9.77 -42.94 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.39 Total: 2.16 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.32 Total: -60.63 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -2.26 Total: -48.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.74 SS G_CDS: -0.65 Total: 52.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.17 -9.77 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340602915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.240 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds