Wall clock time and date at job start Fri Apr 10 2020 17:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 119.99950 * 2 1 4 4 C 1.50702 * 109.46957 * 274.99534 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 S 1.65604 * 119.99536 * 179.97438 * 2 1 3 13 13 O 1.42092 * 106.40380 * 23.54255 * 12 2 1 14 14 O 1.42101 * 106.39783 * 156.46152 * 12 2 1 15 15 N 1.65603 * 107.21518 * 270.00010 * 12 2 1 16 16 C 1.46497 * 119.99961 * 65.00536 * 15 12 2 17 17 H 1.08998 * 110.98663 * 20.79919 * 16 15 12 18 18 C 1.55298 * 111.12397 * 256.55144 * 16 15 12 19 19 C 1.54384 * 102.25086 * 207.94816 * 18 16 15 20 20 O 1.43236 * 107.59054 * 21.35892 * 19 18 16 21 21 C 1.43648 * 109.96889 * 1.70965 * 20 19 18 22 22 H 1.09002 * 110.39174 * 94.53190 * 21 20 19 23 23 C 1.53000 * 110.30902 * 216.65288 * 21 20 19 24 24 C 1.53004 * 117.49756 * 4.46409 * 23 21 20 25 25 C 1.52995 * 117.50094 * 295.80584 * 23 21 20 26 26 H 1.09007 * 109.47205 * 90.00530 * 1 2 3 27 27 H 1.08999 * 109.47284 * 210.00239 * 1 2 3 28 28 H 1.08996 * 109.47487 * 330.00317 * 1 2 3 29 29 H 1.09004 * 109.47166 * 154.99800 * 3 2 1 30 30 H 1.08994 * 109.47507 * 34.99507 * 3 2 1 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 0.96996 * 119.99486 * 244.99958 * 15 12 2 33 33 H 1.09001 * 110.85073 * 326.14103 * 18 16 15 34 34 H 1.09004 * 110.84395 * 89.76430 * 18 16 15 35 35 H 1.09008 * 109.83231 * 261.84342 * 19 18 16 36 36 H 1.09001 * 109.90058 * 140.91710 * 19 18 16 37 37 H 1.08998 * 115.54879 * 150.12972 * 23 21 20 38 38 H 1.08998 * 117.49620 * 359.97438 * 24 23 21 39 39 H 1.08999 * 117.49447 * 145.01841 * 24 23 21 40 40 H 1.09005 * 117.49734 * 214.97721 * 25 23 21 41 41 H 1.09004 * 117.50190 * 359.96961 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4154 5 1 1.9283 1.1937 -2.2332 6 6 2.9953 2.9534 -1.6660 7 7 3.4981 3.6499 -0.6701 8 14 3.1670 3.5730 -3.4197 9 1 2.5198 2.6131 -4.3496 10 1 2.5107 4.8995 -3.5425 11 1 4.6067 3.6996 -3.7613 12 16 2.2929 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8580 1.5827 16 6 1.3945 -2.1768 2.4411 17 1 0.5227 -2.4474 1.8455 18 6 1.0728 -1.0016 3.4041 19 6 0.4348 -1.7291 4.6071 20 8 0.8600 -3.0961 4.5615 21 6 1.7498 -3.2963 3.4517 22 1 2.7866 -3.1999 3.7740 23 6 1.5154 -4.6720 2.8245 24 6 0.3649 -5.5145 3.3792 25 6 1.8140 -5.9010 3.6853 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 3.1858 1.1176 0.4344 30 1 1.6501 2.0042 0.5893 31 1 3.9583 4.4854 -0.8464 32 1 3.4386 -1.8952 1.9408 33 1 1.9844 -0.4840 3.7027 34 1 0.3640 -0.3099 2.9487 35 1 -0.6518 -1.6773 4.5367 36 1 0.7673 -1.2692 5.5377 37 1 1.7220 -4.7432 1.7567 38 1 -0.2246 -5.0887 4.1911 39 1 -0.1850 -6.1402 2.6762 40 1 2.2167 -6.7810 3.1837 41 1 2.1779 -5.7296 4.6984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340602915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:42 Heat of formation + Delta-G solvation = -118.534238 kcal Electronic energy + Delta-G solvation = -24324.274009 eV Core-core repulsion = 20751.936823 eV Total energy + Delta-G solvation = -3572.337186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93656 -38.30671 -37.39568 -37.20960 -36.88333 -35.94745 -34.50549 -31.47522 -29.67207 -29.48227 -26.78784 -24.41130 -24.21459 -23.21385 -22.61426 -21.28561 -20.46960 -19.07166 -18.43301 -18.36583 -17.84738 -17.42172 -16.94533 -16.31681 -16.07050 -15.85893 -15.23566 -15.00869 -14.92196 -14.82113 -14.14583 -14.01554 -13.96202 -13.74138 -13.33250 -13.19824 -13.07690 -13.05285 -12.96659 -12.63016 -12.49000 -12.40956 -12.29015 -12.25959 -12.04018 -11.89935 -11.73689 -11.26929 -11.07104 -10.61454 -10.56466 -10.32819 -9.81158 -8.20868 -6.31865 -0.37624 1.38114 1.40899 1.52104 1.95129 2.39777 2.56040 2.80977 2.88468 3.10464 3.36812 3.46209 3.63852 3.86565 3.94922 4.04791 4.08298 4.13535 4.22680 4.31149 4.52731 4.58029 4.66805 4.80430 4.84121 4.85435 4.94735 4.99822 5.05440 5.08772 5.19416 5.22259 5.26785 5.37764 5.45407 5.69162 5.83234 5.99661 6.07204 6.12679 6.76501 7.37039 8.86650 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.027473 B = 0.004125 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.946645 B = 6786.005212 C = 7201.363027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.999 5.999 3 C 0.273 3.727 4 C -0.550 4.550 5 H 0.050 0.950 6 C 0.014 3.986 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.270 1.270 11 H -0.280 1.280 12 S 2.799 3.201 13 O -1.006 7.006 14 O -1.009 7.009 15 N -1.105 6.105 16 C 0.121 3.879 17 H 0.107 0.893 18 C -0.174 4.174 19 C 0.054 3.946 20 O -0.382 6.382 21 C 0.115 3.885 22 H 0.087 0.913 23 C -0.181 4.181 24 C -0.163 4.163 25 C -0.166 4.166 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.017 0.983 30 H 0.033 0.967 31 H 0.267 0.733 32 H 0.424 0.576 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -13.058 12.472 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.841 5.841 3 C 0.150 3.850 4 C -0.589 4.589 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.195 1.195 11 H -0.206 1.206 12 S 2.807 3.193 13 O -0.989 6.989 14 O -0.993 6.993 15 N -0.866 5.866 16 C 0.013 3.987 17 H 0.125 0.875 18 C -0.213 4.213 19 C -0.023 4.023 20 O -0.302 6.302 21 C 0.056 3.944 22 H 0.104 0.896 23 C -0.199 4.199 24 C -0.200 4.200 25 C -0.203 4.203 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.260 0.740 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.959 -13.541 11.815 19.271 hybrid contribution 0.742 1.058 -0.763 1.501 sum -6.217 -12.482 11.053 17.794 Atomic orbital electron populations 1.21498 0.78055 1.03308 1.01924 1.57473 1.15593 1.21924 1.89126 1.18634 0.90531 0.80128 0.95732 1.21884 1.36192 1.06437 0.94398 0.93212 1.25695 0.94853 0.96806 1.01235 1.70001 1.38025 1.15646 1.32578 0.85576 0.77996 0.78423 0.80129 1.19586 1.19478 1.20558 1.01229 0.72150 0.72523 0.73436 1.93523 1.67644 1.60204 1.77566 1.93584 1.42958 1.85430 1.77303 1.55701 1.15220 1.84955 1.30742 1.22519 0.88516 0.95115 0.92569 0.87546 1.23638 1.03319 0.98291 0.96097 1.23196 1.00087 0.80836 0.98173 1.88393 1.65206 1.28188 1.48367 1.22506 0.94407 0.92430 0.85062 0.89571 1.22479 1.07306 0.91113 0.98993 1.22921 0.91480 1.02029 1.03543 1.23002 0.99042 0.97587 1.00677 0.93832 0.90109 0.89821 0.96454 0.94876 0.92393 0.74027 0.89497 0.88528 0.89580 0.89820 0.87529 0.87869 0.88373 0.87897 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.05 10.33 127.77 1.32 4.37 16 2 N -1.00 -39.17 3.23 -543.24 -1.75 -40.92 16 3 C 0.27 13.35 5.12 85.64 0.44 13.79 16 4 C -0.55 -30.76 9.38 25.60 0.24 -30.52 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.77 5.46 84.66 0.46 1.23 16 7 N -0.92 -53.24 13.29 21.45 0.28 -52.96 16 8 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 S 2.80 106.06 6.03 -56.49 -0.34 105.72 16 13 O -1.01 -39.79 16.62 -128.00 -2.13 -41.92 16 14 O -1.01 -47.91 17.11 -128.00 -2.19 -50.10 16 15 N -1.10 -29.89 5.68 -163.37 -0.93 -30.82 16 16 C 0.12 2.74 3.20 46.45 0.15 2.89 16 17 H 0.11 2.49 6.89 -2.39 -0.02 2.47 16 18 C -0.17 -3.35 6.72 31.85 0.21 -3.13 16 19 C 0.05 0.88 7.79 72.45 0.56 1.45 16 20 O -0.38 -7.76 9.47 -148.98 -1.41 -9.17 16 21 C 0.12 2.38 3.48 31.26 0.11 2.49 16 22 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 23 C -0.18 -3.77 5.71 -10.79 -0.06 -3.83 16 24 C -0.16 -3.02 9.89 30.62 0.30 -2.72 16 25 C -0.17 -2.91 10.24 30.62 0.31 -2.60 16 26 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.08 2.00 7.16 -2.39 -0.02 1.98 16 28 H 0.08 2.34 7.94 -2.39 -0.02 2.32 16 29 H 0.02 0.92 7.61 -2.38 -0.02 0.90 16 30 H 0.03 1.62 7.96 -2.39 -0.02 1.60 16 31 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.42 9.99 8.82 -96.75 -0.85 9.14 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 2.48 8.13 -2.39 -0.02 2.46 16 38 H 0.10 1.96 7.07 -2.39 -0.02 1.94 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -70.24 350.49 -2.21 -72.45 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.17 Total: 17.92 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.05 Total: -16.60 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -2.40 Total: -124.70 kcal Atomic # 8 Polarization: -95.46 SS G_CDS: -5.73 Total: -101.19 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 106.06 SS G_CDS: -0.34 Total: 105.72 kcal Total: -70.24 -2.21 -72.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340602915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.085 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds