Wall clock time and date at job start Fri Apr 10 2020 17:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81401 * 109.47446 * 2 1 4 4 O 1.42110 * 110.54070 * 68.37621 * 3 2 1 5 5 O 1.42095 * 110.54411 * 291.62848 * 3 2 1 6 6 N 1.65600 * 104.45089 * 179.97438 * 3 2 1 7 7 C 1.46496 * 119.99728 * 65.00161 * 6 3 2 8 8 C 1.50706 * 109.47106 * 164.99627 * 7 6 3 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00182 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99668 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47170 * 89.99666 * 16 14 12 18 18 H 1.48495 * 109.46883 * 209.99839 * 16 14 12 19 19 H 1.48496 * 109.47123 * 329.99923 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47172 * 300.00094 * 1 2 3 26 26 H 1.08997 * 109.46953 * 60.00103 * 1 2 3 27 27 H 1.09002 * 109.47172 * 239.99905 * 2 1 3 28 28 H 1.09001 * 109.47548 * 120.00325 * 2 1 3 29 29 H 0.96998 * 120.00167 * 244.99931 * 6 3 2 30 30 H 1.09001 * 109.47001 * 44.99918 * 7 6 3 31 31 H 1.09000 * 109.47574 * 285.00134 * 7 6 3 32 32 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 33 33 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 34 34 H 0.97002 * 119.99991 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 36 36 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 37 37 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 38 38 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 39 39 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 40 40 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 41 41 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2371 5 8 1.8386 2.3439 -1.2369 6 7 3.7843 1.5652 0.0007 7 6 4.4675 0.9668 -1.1488 8 6 5.9402 1.2786 -1.0761 9 8 6.3761 1.9355 -0.1545 10 7 6.7728 0.8265 -2.0346 11 6 8.2044 1.1291 -1.9635 12 6 8.9097 0.0435 -1.1921 13 1 8.3476 -0.7885 -0.7941 14 6 10.2725 0.1124 -0.9943 15 7 10.8879 -0.8347 -0.3207 16 14 11.2445 1.5517 -1.6820 17 1 11.2936 2.6421 -0.6751 18 1 12.6258 1.1092 -2.0002 19 1 10.5867 2.0481 -2.9173 20 6 6.2462 0.0325 -3.1474 21 6 5.8454 0.9637 -4.2934 22 6 4.3666 1.0076 -4.6835 23 6 5.3790 0.3166 -5.5991 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 4.2983 1.8765 0.7622 30 1 4.0545 1.3766 -2.0705 31 1 4.3237 -0.1136 -1.1350 32 1 8.6148 1.1834 -2.9719 33 1 8.3492 2.0852 -1.4604 34 1 11.8466 -0.7861 -0.1812 35 1 7.0127 -0.6608 -3.4938 36 1 5.3736 -0.5283 -2.8128 37 1 6.4133 1.8912 -4.3661 38 1 3.6792 0.3736 -4.1235 39 1 3.9612 1.9645 -5.0128 40 1 5.6398 0.8188 -6.5307 41 1 5.3578 -0.7722 -5.6418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340728319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:54 Heat of formation + Delta-G solvation = -79.848271 kcal Electronic energy + Delta-G solvation = -23684.306412 eV Core-core repulsion = 20113.646775 eV Total energy + Delta-G solvation = -3570.659636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.56838 -37.38085 -37.20509 -36.06982 -35.04651 -34.32566 -33.45176 -32.53915 -29.06921 -27.18491 -25.85804 -24.34958 -22.38189 -22.31054 -20.84545 -19.47467 -18.90624 -17.98089 -17.03181 -16.91863 -16.49069 -16.12583 -15.69705 -15.39930 -15.00763 -14.67998 -14.30455 -14.12108 -13.92105 -13.53137 -13.05678 -12.83175 -12.69439 -12.58896 -12.38875 -12.21744 -12.11137 -11.99946 -11.88452 -11.64100 -11.56790 -11.51191 -10.99337 -10.85501 -10.61635 -10.41542 -10.17528 -9.96892 -9.67229 -9.58530 -9.18817 -8.64063 -7.88688 -6.14201 -4.13640 0.09055 2.55684 3.10791 3.25994 3.31819 3.34338 3.53634 3.65411 3.85934 4.00506 4.30049 4.35170 4.54549 4.58780 4.81761 4.85759 4.92039 5.05700 5.12715 5.19880 5.22996 5.29955 5.34151 5.38034 5.51111 5.60706 5.62806 5.73949 5.89530 5.93880 6.10259 6.31207 6.61919 6.85842 6.99002 7.19387 7.54084 8.07142 8.38893 8.74634 8.88426 9.45740 10.98954 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.004298 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.834886 B = 6513.137617 C = 7510.417320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.615 3.385 4 O -0.956 6.956 5 O -0.955 6.955 6 N -1.106 6.106 7 C 0.092 3.908 8 C 0.510 3.490 9 O -0.530 6.530 10 N -0.585 5.585 11 C 0.216 3.784 12 C -0.531 4.531 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.138 3.862 21 C -0.172 4.172 22 C -0.185 4.185 23 C -0.174 4.174 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.428 0.572 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.952 -0.798 -6.678 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.706 3.294 4 O -0.946 6.946 5 O -0.945 6.945 6 N -0.869 5.869 7 C -0.038 4.038 8 C 0.295 3.705 9 O -0.406 6.406 10 N -0.316 5.316 11 C 0.095 3.905 12 C -0.569 4.569 13 H 0.093 0.907 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.190 1.190 20 C 0.014 3.986 21 C -0.192 4.192 22 C -0.222 4.222 23 C -0.211 4.211 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.267 0.733 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.073 0.234 -6.267 20.077 hybrid contribution 1.107 -0.118 -0.076 1.116 sum -17.966 0.116 -6.343 19.053 Atomic orbital electron populations 1.21495 0.90481 1.05038 1.03463 1.30542 1.07252 1.26775 1.11930 1.04897 0.72852 0.77231 0.74414 1.93613 1.83036 1.72933 1.45029 1.93598 1.83415 1.71928 1.45546 1.55327 1.25535 1.77865 1.28178 1.21245 0.93730 0.98726 0.90112 1.20026 0.87223 0.80525 0.82772 1.90674 1.77069 1.39617 1.33256 1.47828 1.09469 1.51788 1.22544 1.19720 0.75415 0.97882 0.97453 1.21291 0.92902 1.07913 1.34840 0.90706 1.24839 0.97531 0.95903 0.94608 1.69886 1.09891 1.33306 1.40358 0.86858 0.79617 0.83187 0.80080 1.19895 1.21050 1.19022 1.21129 0.99620 0.92397 0.85454 1.22955 0.97316 1.02336 0.96573 1.23100 0.92195 1.02695 1.04225 1.22906 1.03863 1.00141 0.94220 0.90019 0.90960 0.90916 0.84985 0.84657 0.73295 0.87513 0.89392 0.94891 0.94427 0.92496 0.88759 0.91107 0.87290 0.88794 0.88760 0.88902 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.92 37.15 0.37 -0.58 16 2 C -0.64 -4.55 6.79 37.15 0.25 -4.30 16 3 S 2.61 29.63 5.46 -107.50 -0.59 29.04 16 4 O -0.96 -13.90 18.08 -57.54 -1.04 -14.94 16 5 O -0.95 -13.22 17.50 -57.54 -1.01 -14.22 16 6 N -1.11 -14.43 5.82 -11.66 -0.07 -14.50 16 7 C 0.09 1.22 5.16 -5.19 -0.03 1.19 16 8 C 0.51 9.64 7.74 -10.98 -0.09 9.55 16 9 O -0.53 -12.22 15.31 5.56 0.09 -12.14 16 10 N -0.59 -11.10 2.46 -175.06 -0.43 -11.53 16 11 C 0.22 5.01 4.23 -5.20 -0.02 4.99 16 12 C -0.53 -14.62 9.94 -34.44 -0.34 -14.97 16 13 H 0.07 2.24 8.06 -52.48 -0.42 1.82 16 14 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 16 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 20 C 0.14 1.95 5.49 -4.04 -0.02 1.93 16 21 C -0.17 -2.11 5.95 -90.62 -0.54 -2.65 16 22 C -0.19 -1.86 9.18 -26.73 -0.25 -2.10 16 23 C -0.17 -1.70 10.25 -26.73 -0.27 -1.98 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.14 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.43 6.18 7.66 -34.47 -0.26 5.91 16 30 H 0.11 1.26 6.40 -51.93 -0.33 0.93 16 31 H 0.09 0.86 7.40 -51.93 -0.38 0.47 16 32 H 0.03 0.73 7.13 -51.92 -0.37 0.36 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 36 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 37 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.09 0.80 7.87 -51.93 -0.41 0.40 16 39 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.84 8.14 -51.94 -0.42 0.42 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -36.84 354.14 -8.89 -45.73 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.25 Total: 3.91 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.03 Total: -6.91 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.28 Total: -52.22 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.96 Total: -41.30 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 29.63 SS G_CDS: -0.59 Total: 29.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.84 -8.89 -45.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340728319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.119 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds