Wall clock time and date at job start Fri Apr 10 2020 17:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81401 * 109.47446 * 2 1 4 4 O 1.42110 * 110.54070 * 68.37621 * 3 2 1 5 5 O 1.42095 * 110.54411 * 291.62848 * 3 2 1 6 6 N 1.65600 * 104.45089 * 179.97438 * 3 2 1 7 7 C 1.46496 * 119.99728 * 65.00161 * 6 3 2 8 8 C 1.50706 * 109.47106 * 164.99627 * 7 6 3 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47598 * 90.00303 * 11 10 8 13 13 H 1.08005 * 119.99628 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00182 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99668 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47170 * 89.99666 * 16 14 12 18 18 H 1.48495 * 109.46883 * 209.99839 * 16 14 12 19 19 H 1.48496 * 109.47123 * 329.99923 * 16 14 12 20 20 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 21 21 C 1.53004 * 109.46986 * 90.00387 * 20 10 8 22 22 C 1.52997 * 117.49514 * 243.61460 * 21 20 10 23 23 C 1.52997 * 60.00268 * 252.51458 * 22 21 20 24 24 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47172 * 300.00094 * 1 2 3 26 26 H 1.08997 * 109.46953 * 60.00103 * 1 2 3 27 27 H 1.09002 * 109.47172 * 239.99905 * 2 1 3 28 28 H 1.09001 * 109.47548 * 120.00325 * 2 1 3 29 29 H 0.96998 * 120.00167 * 244.99931 * 6 3 2 30 30 H 1.09001 * 109.47001 * 44.99918 * 7 6 3 31 31 H 1.09000 * 109.47574 * 285.00134 * 7 6 3 32 32 H 1.09008 * 109.47096 * 209.99661 * 11 10 8 33 33 H 1.09003 * 109.47776 * 329.99537 * 11 10 8 34 34 H 0.97002 * 119.99991 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.46971 * 209.99938 * 20 10 8 36 36 H 1.08993 * 109.47768 * 330.00002 * 20 10 8 37 37 H 1.09000 * 115.55217 * 29.32861 * 21 20 10 38 38 H 1.09003 * 117.50408 * 0.02562 * 22 21 20 39 39 H 1.09009 * 117.49806 * 145.01909 * 22 21 20 40 40 H 1.09001 * 117.49351 * 252.51715 * 23 22 21 41 41 H 1.08988 * 117.50123 * 107.49613 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2371 5 8 1.8386 2.3439 -1.2369 6 7 3.7843 1.5652 0.0007 7 6 4.4675 0.9668 -1.1488 8 6 5.9402 1.2786 -1.0761 9 8 6.3761 1.9355 -0.1545 10 7 6.7728 0.8265 -2.0346 11 6 8.2044 1.1291 -1.9635 12 6 8.9097 0.0435 -1.1921 13 1 8.3476 -0.7885 -0.7941 14 6 10.2725 0.1124 -0.9943 15 7 10.8879 -0.8347 -0.3207 16 14 11.2445 1.5517 -1.6820 17 1 11.2936 2.6421 -0.6751 18 1 12.6258 1.1092 -2.0002 19 1 10.5867 2.0481 -2.9173 20 6 6.2462 0.0325 -3.1474 21 6 5.8454 0.9637 -4.2934 22 6 4.3666 1.0076 -4.6835 23 6 5.3790 0.3166 -5.5991 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 4.2983 1.8765 0.7622 30 1 4.0545 1.3766 -2.0705 31 1 4.3237 -0.1136 -1.1350 32 1 8.6148 1.1834 -2.9719 33 1 8.3492 2.0852 -1.4604 34 1 11.8466 -0.7861 -0.1812 35 1 7.0127 -0.6608 -3.4938 36 1 5.3736 -0.5283 -2.8128 37 1 6.4133 1.8912 -4.3661 38 1 3.6792 0.3736 -4.1235 39 1 3.9612 1.9645 -5.0128 40 1 5.6398 0.8188 -6.5307 41 1 5.3578 -0.7722 -5.6418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340728319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:53 Heat of formation + Delta-G solvation = -109.090857 kcal Electronic energy + Delta-G solvation = -23685.574465 eV Core-core repulsion = 20113.646775 eV Total energy + Delta-G solvation = -3571.927690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98050 -38.41409 -38.19076 -37.04464 -36.38640 -35.58012 -34.57963 -33.99374 -30.82575 -28.35459 -27.28781 -24.90933 -24.15028 -23.11951 -21.86718 -20.42974 -20.19298 -19.08888 -19.02213 -18.00620 -17.60469 -17.17306 -16.92606 -16.67277 -16.18411 -15.89379 -15.44041 -15.17165 -14.98204 -14.56095 -14.35701 -14.18151 -13.89312 -13.86482 -13.38597 -13.33338 -13.23111 -13.15766 -13.09330 -12.91213 -12.55856 -12.44746 -12.35275 -12.21923 -12.04524 -11.75693 -11.58511 -11.23293 -10.97979 -10.82330 -10.74315 -10.43188 -9.46889 -8.33452 -6.37610 -0.74924 1.32658 1.36439 1.44031 1.62837 1.68032 2.22688 2.30842 2.82159 2.99019 3.01715 3.22884 3.42530 3.74907 3.91295 3.94636 4.06408 4.12398 4.19563 4.30076 4.38149 4.43115 4.53527 4.75054 4.76904 4.77694 4.89528 4.90082 4.92237 4.97145 5.14780 5.16680 5.35545 5.39205 5.45930 5.58927 5.86758 6.23251 6.62382 6.64673 7.19998 7.33236 8.82967 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.004298 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.834886 B = 6513.137617 C = 7510.417320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.606 4.606 3 S 2.613 3.387 4 O -0.997 6.997 5 O -0.986 6.986 6 N -1.117 6.117 7 C 0.098 3.902 8 C 0.497 3.503 9 O -0.585 6.585 10 N -0.591 5.591 11 C 0.224 3.776 12 C -0.532 4.532 13 H 0.037 0.963 14 C 0.015 3.985 15 N -0.943 5.943 16 Si 0.941 3.059 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.240 1.240 20 C 0.134 3.866 21 C -0.195 4.195 22 C -0.175 4.175 23 C -0.159 4.159 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.420 0.580 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.049 0.951 33 H 0.016 0.984 34 H 0.268 0.732 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.052 -1.885 -8.782 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.740 4.740 3 S 2.710 3.290 4 O -0.988 6.988 5 O -0.976 6.976 6 N -0.877 5.877 7 C -0.031 4.031 8 C 0.284 3.716 9 O -0.465 6.465 10 N -0.321 5.321 11 C 0.102 3.898 12 C -0.571 4.571 13 H 0.055 0.945 14 C -0.183 4.183 15 N -0.583 5.583 16 Si 0.764 3.236 17 H -0.205 1.205 18 H -0.201 1.201 19 H -0.164 1.164 20 C 0.012 3.988 21 C -0.215 4.215 22 C -0.212 4.212 23 C -0.196 4.196 24 H 0.125 0.875 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.183 0.817 28 H 0.172 0.828 29 H 0.256 0.744 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.196 -0.826 -8.431 22.826 hybrid contribution 1.658 0.111 0.598 1.766 sum -19.538 -0.715 -7.833 21.062 Atomic orbital electron populations 1.21704 0.89671 1.06687 1.03804 1.30309 1.07729 1.21377 1.14592 1.04875 0.71987 0.79211 0.72922 1.93557 1.83244 1.75517 1.46493 1.93548 1.83444 1.74408 1.46186 1.55405 1.26058 1.78503 1.27735 1.21390 0.89177 1.01489 0.91046 1.21059 0.89600 0.79329 0.81576 1.90641 1.78566 1.41970 1.35327 1.47884 1.07851 1.52267 1.24107 1.19334 0.78288 0.95202 0.96979 1.21533 0.93085 1.07782 1.34665 0.94488 1.25745 0.98832 0.98717 0.95035 1.70027 1.10396 1.35604 1.42267 0.85814 0.78401 0.79222 0.80123 1.20513 1.20084 1.16358 1.21412 1.00480 0.92301 0.84623 1.22717 0.99355 1.01726 0.97671 1.23246 0.91031 1.03208 1.03671 1.23015 1.02353 1.01059 0.93186 0.87530 0.91219 0.90380 0.81708 0.82784 0.74390 0.85621 0.84901 0.93352 0.96568 0.92320 0.89951 0.87398 0.89460 0.86494 0.88770 0.88326 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.92 71.98 0.71 -0.74 16 2 C -0.61 -6.12 6.79 71.98 0.49 -5.63 16 3 S 2.61 55.40 5.46 -56.49 -0.31 55.09 16 4 O -1.00 -29.12 18.08 -127.65 -2.31 -31.43 16 5 O -0.99 -25.85 17.50 -127.65 -2.23 -28.08 16 6 N -1.12 -28.06 5.82 -190.79 -1.11 -29.17 16 7 C 0.10 2.38 5.16 85.64 0.44 2.82 16 8 C 0.50 18.72 7.74 87.66 0.68 19.40 16 9 O -0.58 -27.95 15.31 -3.02 -0.05 -28.00 16 10 N -0.59 -22.25 2.46 -826.16 -2.03 -24.28 16 11 C 0.22 10.56 4.23 85.63 0.36 10.92 16 12 C -0.53 -30.15 9.94 25.60 0.25 -29.89 16 13 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 14 C 0.02 0.87 5.47 84.66 0.46 1.33 16 15 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 16 Si 0.94 43.96 27.47 68.60 1.88 45.85 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 19 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 20 C 0.13 3.52 5.49 86.38 0.47 3.99 16 21 C -0.20 -4.36 5.95 -10.79 -0.06 -4.42 16 22 C -0.17 -2.85 9.18 30.59 0.28 -2.57 16 23 C -0.16 -2.56 10.25 30.59 0.31 -2.25 16 24 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.42 12.40 7.66 -96.75 -0.74 11.66 16 30 H 0.13 2.57 6.40 -2.39 -0.02 2.55 16 31 H 0.13 1.99 7.40 -2.39 -0.02 1.97 16 32 H 0.05 2.12 7.13 -2.38 -0.02 2.10 16 33 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 34 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.08 2.34 8.07 -2.38 -0.02 2.32 16 36 H 0.11 1.96 6.17 -2.39 -0.01 1.95 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.12 1.37 7.87 -2.39 -0.02 1.35 16 39 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -85.47 354.14 -1.21 -86.68 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.24 Total: 18.42 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.41 Total: -7.04 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -2.84 Total: -111.49 kcal Atomic # 8 Polarization: -82.92 SS G_CDS: -4.59 Total: -87.51 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.31 Total: 55.09 kcal Total: -85.47 -1.21 -86.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340728319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.409 kcal (2) G-P(sol) polarization free energy of solvation -85.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds