Wall clock time and date at job start Fri Apr 10 2020 17:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47120 * 2 1 4 4 C 1.46494 * 119.99482 * 274.99426 * 3 2 1 5 5 C 1.50693 * 109.47573 * 279.69882 * 4 3 2 6 6 H 1.07997 * 120.00059 * 4.89539 * 5 4 3 7 7 C 1.37877 * 120.00229 * 184.88904 * 5 4 3 8 8 N 1.31518 * 120.00049 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00151 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47239 * 89.99722 * 9 7 5 11 11 H 1.48503 * 109.47414 * 209.99894 * 9 7 5 12 12 H 1.48501 * 109.47061 * 330.00164 * 9 7 5 13 13 S 1.65597 * 120.00005 * 94.99973 * 3 2 1 14 14 O 1.42100 * 106.40588 * 330.20080 * 13 3 2 15 15 O 1.42108 * 106.39983 * 197.28265 * 13 3 2 16 16 N 1.65595 * 107.21962 * 83.74399 * 13 3 2 17 17 C 1.46501 * 120.00344 * 64.19613 * 16 13 3 18 18 C 1.50700 * 109.47180 * 164.95375 * 17 16 13 19 19 C 1.29979 * 118.56766 * 95.00644 * 18 17 16 20 20 C 1.50380 * 122.51372 * 180.43225 * 19 18 17 21 21 C 1.53124 * 109.59627 * 343.37452 * 20 19 18 22 22 O 1.43297 * 108.41336 * 47.82147 * 21 20 19 23 23 C 1.42890 * 113.02697 * 291.85401 * 22 21 20 24 24 H 1.08992 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47365 * 300.00342 * 1 2 3 26 26 H 1.08998 * 109.47037 * 60.00049 * 1 2 3 27 27 H 1.08998 * 109.47137 * 239.99190 * 2 1 3 28 28 H 1.09005 * 109.46497 * 119.99571 * 2 1 3 29 29 H 1.08998 * 109.47325 * 39.70580 * 4 3 2 30 30 H 1.09004 * 109.46956 * 159.70353 * 4 3 2 31 31 H 0.97006 * 119.99790 * 179.97438 * 8 7 5 32 32 H 0.97005 * 120.00119 * 244.19987 * 16 13 3 33 33 H 1.09003 * 109.46602 * 44.96004 * 17 16 13 34 34 H 1.08991 * 109.47312 * 284.95819 * 17 16 13 35 35 H 1.08002 * 118.74206 * 0.44889 * 19 18 17 36 36 H 1.09000 * 109.45479 * 223.33132 * 20 19 18 37 37 H 1.09006 * 109.42875 * 103.39869 * 20 19 18 38 38 H 1.09004 * 109.68136 * 167.56785 * 21 20 19 39 39 H 1.09004 * 109.67905 * 288.07891 * 21 20 19 40 40 H 1.08997 * 109.33041 * 289.93113 * 23 22 21 41 41 H 1.08995 * 109.25739 * 170.27517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1085 -1.2639 5 6 3.4427 1.7010 -1.9385 6 1 4.0508 0.9165 -1.5130 7 6 3.8415 2.3295 -3.0991 8 7 4.9622 1.9735 -3.6881 9 14 2.7900 3.6869 -3.8349 10 1 3.2098 4.9967 -3.2752 11 1 2.9612 3.7011 -5.3100 12 1 1.3632 3.4419 -3.5044 13 16 2.4122 2.1202 1.4287 14 8 1.5785 1.5413 2.4231 15 8 2.4495 3.5155 1.1617 16 7 3.9628 1.6736 1.8004 17 6 5.0696 2.0741 0.9281 18 6 6.3765 1.8773 1.6522 19 6 7.0294 0.7689 1.4661 20 6 8.3361 0.4758 2.1504 21 6 8.9280 1.7746 2.7049 22 8 7.8984 2.4746 3.4144 23 6 6.8677 2.9706 2.5581 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.3158 1.8729 -1.9140 30 1 2.1760 3.1804 -1.0663 31 1 5.2426 2.4155 -4.5048 32 1 4.1384 1.1468 2.5958 33 1 4.9581 3.1244 0.6588 34 1 5.0593 1.4643 0.0248 35 1 6.6179 0.0303 0.7941 36 1 9.0307 0.0372 1.4340 37 1 8.1679 -0.2247 2.9684 38 1 9.7494 1.5434 3.3833 39 1 9.2928 2.3917 1.8838 40 1 7.2617 3.7891 1.9558 41 1 6.0398 3.3353 3.1660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344959898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:56 Heat of formation + Delta-G solvation = -109.895233 kcal Electronic energy + Delta-G solvation = -24337.780946 eV Core-core repulsion = 20765.818376 eV Total energy + Delta-G solvation = -3571.962570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.42934 -36.75050 -36.22261 -35.65033 -35.28903 -33.05571 -32.68474 -30.92995 -30.24363 -27.18352 -25.73966 -25.26266 -22.96639 -22.59825 -21.56983 -18.90326 -18.13175 -17.35758 -16.97485 -16.88153 -16.27909 -16.10721 -15.76776 -15.17619 -14.44783 -14.22195 -14.00880 -13.80899 -13.42451 -13.17216 -12.93294 -12.76946 -12.53869 -12.44924 -12.31370 -12.07544 -11.95119 -11.66817 -11.50236 -11.41144 -11.18581 -11.12442 -10.99567 -10.57436 -10.52679 -10.37033 -10.18723 -9.68578 -9.60569 -8.96991 -8.85785 -8.69127 -8.14743 -6.21665 -4.22034 1.18583 2.19592 3.23846 3.31004 3.35224 3.52612 3.86694 4.11229 4.31532 4.71764 4.87700 4.92934 5.00553 5.11716 5.17358 5.32753 5.36627 5.47329 5.53413 5.63906 5.67300 5.71968 5.81198 5.85802 5.99759 6.03955 6.15059 6.24955 6.43532 6.53230 6.60833 6.63230 6.84401 6.89526 7.08006 7.14529 7.26099 7.46079 7.54336 8.35353 8.79470 9.39718 10.89884 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.006110 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.826538 B = 4581.841355 C = 5882.406472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.987 5.987 4 C 0.212 3.788 5 C -0.542 4.542 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.868 3.132 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.786 3.214 14 O -0.997 6.997 15 O -0.982 6.982 16 N -1.126 6.126 17 C 0.155 3.845 18 C -0.167 4.167 19 C -0.130 4.130 20 C -0.125 4.125 21 C 0.056 3.944 22 O -0.381 6.381 23 C 0.095 3.905 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -3.310 9.576 10.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.580 4.580 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.695 3.305 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.794 3.206 14 O -0.981 6.981 15 O -0.966 6.966 16 N -0.885 5.885 17 C 0.030 3.970 18 C -0.168 4.168 19 C -0.149 4.149 20 C -0.162 4.162 21 C -0.021 4.021 22 O -0.299 6.299 23 C 0.019 3.981 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.793 -2.521 9.932 10.621 hybrid contribution -0.092 0.093 -0.902 0.911 sum 2.701 -2.428 9.030 9.733 Atomic orbital electron populations 1.22220 0.96907 1.01528 1.02377 1.20986 0.93580 0.82491 1.02451 1.57519 1.78863 1.23119 1.23244 1.19584 0.98192 0.92312 0.81028 1.21412 1.05746 1.21710 1.09172 0.89959 1.24837 0.94721 0.96547 0.96468 1.69884 1.21765 1.41991 1.19268 0.86966 0.81735 0.83223 0.78609 1.19685 1.21093 1.18860 1.01702 0.72647 0.73667 0.72562 1.93559 1.65623 1.79643 1.59300 1.93563 1.86693 1.31078 1.85244 1.55996 1.24767 1.71221 1.36497 1.20407 0.82009 1.02390 0.92209 1.21714 0.97689 0.97031 1.00411 1.22220 0.96024 0.97453 0.99221 1.21125 0.95946 0.98810 1.00355 1.22651 0.90314 0.92330 0.96817 1.88099 1.34391 1.73793 1.33655 1.21411 0.90474 0.93795 0.92408 0.92232 0.92408 0.92276 0.89849 0.91858 0.94781 0.93693 0.92466 0.75995 0.89949 0.88201 0.86411 0.89897 0.90051 0.88825 0.92645 0.91616 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.17 6.03 -4.04 -0.02 2.14 16 3 N -0.99 -19.10 2.84 -115.67 -0.33 -19.43 16 4 C 0.21 4.76 4.52 -5.20 -0.02 4.74 16 5 C -0.54 -13.51 9.05 -34.44 -0.31 -13.83 16 6 H 0.08 2.14 6.65 -52.49 -0.35 1.79 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -24.87 13.96 55.43 0.77 -24.10 16 9 Si 0.87 20.33 27.37 -169.99 -4.65 15.68 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.95 6.69 56.52 0.38 -5.57 16 13 S 2.79 52.90 6.06 -107.50 -0.65 52.25 16 14 O -1.00 -19.65 17.17 -57.17 -0.98 -20.63 16 15 O -0.98 -21.66 16.05 -57.17 -0.92 -22.58 16 16 N -1.13 -18.11 6.05 -11.66 -0.07 -18.18 16 17 C 0.15 2.64 6.21 -5.19 -0.03 2.61 16 18 C -0.17 -2.44 5.32 -101.00 -0.54 -2.97 16 19 C -0.13 -1.75 9.53 -35.89 -0.34 -2.10 16 20 C -0.13 -1.36 6.36 -27.97 -0.18 -1.53 16 21 C 0.06 0.60 6.89 37.22 0.26 0.86 16 22 O -0.38 -5.15 10.84 -35.23 -0.38 -5.53 16 23 C 0.10 1.30 6.76 35.78 0.24 1.54 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 26 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 27 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 28 H 0.06 0.93 7.78 -51.93 -0.40 0.53 16 29 H 0.03 0.76 7.50 -51.93 -0.39 0.37 16 30 H 0.05 1.06 5.94 -51.93 -0.31 0.75 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.41 5.62 8.65 -34.47 -0.30 5.32 16 33 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16 34 H 0.10 1.92 5.55 -51.93 -0.29 1.63 16 35 H 0.12 1.64 7.83 -52.49 -0.41 1.23 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -30.64 344.70 -8.91 -39.55 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.22 Total: 6.54 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.67 Total: -8.76 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.37 Total: -61.71 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -2.28 Total: -48.74 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.65 Total: 15.68 kcal Atomic # 16 Polarization: 52.90 SS G_CDS: -0.65 Total: 52.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.64 -8.91 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344959898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.346 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds