Wall clock time and date at job start Fri Apr 10 2020 17:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47120 * 2 1 4 4 C 1.46494 * 119.99482 * 274.99426 * 3 2 1 5 5 C 1.50693 * 109.47573 * 279.69882 * 4 3 2 6 6 H 1.07997 * 120.00059 * 4.89539 * 5 4 3 7 7 C 1.37877 * 120.00229 * 184.88904 * 5 4 3 8 8 N 1.31518 * 120.00049 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00151 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47239 * 89.99722 * 9 7 5 11 11 H 1.48503 * 109.47414 * 209.99894 * 9 7 5 12 12 H 1.48501 * 109.47061 * 330.00164 * 9 7 5 13 13 S 1.65597 * 120.00005 * 94.99973 * 3 2 1 14 14 O 1.42100 * 106.40588 * 330.20080 * 13 3 2 15 15 O 1.42108 * 106.39983 * 197.28265 * 13 3 2 16 16 N 1.65595 * 107.21962 * 83.74399 * 13 3 2 17 17 C 1.46501 * 120.00344 * 64.19613 * 16 13 3 18 18 C 1.50700 * 109.47180 * 164.95375 * 17 16 13 19 19 C 1.29979 * 118.56766 * 95.00644 * 18 17 16 20 20 C 1.50380 * 122.51372 * 180.43225 * 19 18 17 21 21 C 1.53124 * 109.59627 * 343.37452 * 20 19 18 22 22 O 1.43297 * 108.41336 * 47.82147 * 21 20 19 23 23 C 1.42890 * 113.02697 * 291.85401 * 22 21 20 24 24 H 1.08992 * 109.47331 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47365 * 300.00342 * 1 2 3 26 26 H 1.08998 * 109.47037 * 60.00049 * 1 2 3 27 27 H 1.08998 * 109.47137 * 239.99190 * 2 1 3 28 28 H 1.09005 * 109.46497 * 119.99571 * 2 1 3 29 29 H 1.08998 * 109.47325 * 39.70580 * 4 3 2 30 30 H 1.09004 * 109.46956 * 159.70353 * 4 3 2 31 31 H 0.97006 * 119.99790 * 179.97438 * 8 7 5 32 32 H 0.97005 * 120.00119 * 244.19987 * 16 13 3 33 33 H 1.09003 * 109.46602 * 44.96004 * 17 16 13 34 34 H 1.08991 * 109.47312 * 284.95819 * 17 16 13 35 35 H 1.08002 * 118.74206 * 0.44889 * 19 18 17 36 36 H 1.09000 * 109.45479 * 223.33132 * 20 19 18 37 37 H 1.09006 * 109.42875 * 103.39869 * 20 19 18 38 38 H 1.09004 * 109.68136 * 167.56785 * 21 20 19 39 39 H 1.09004 * 109.67905 * 288.07891 * 21 20 19 40 40 H 1.08997 * 109.33041 * 289.93113 * 23 22 21 41 41 H 1.08995 * 109.25739 * 170.27517 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1085 -1.2639 5 6 3.4427 1.7010 -1.9385 6 1 4.0508 0.9165 -1.5130 7 6 3.8415 2.3295 -3.0991 8 7 4.9622 1.9735 -3.6881 9 14 2.7900 3.6869 -3.8349 10 1 3.2098 4.9967 -3.2752 11 1 2.9612 3.7011 -5.3100 12 1 1.3632 3.4419 -3.5044 13 16 2.4122 2.1202 1.4287 14 8 1.5785 1.5413 2.4231 15 8 2.4495 3.5155 1.1617 16 7 3.9628 1.6736 1.8004 17 6 5.0696 2.0741 0.9281 18 6 6.3765 1.8773 1.6522 19 6 7.0294 0.7689 1.4661 20 6 8.3361 0.4758 2.1504 21 6 8.9280 1.7746 2.7049 22 8 7.8984 2.4746 3.4144 23 6 6.8677 2.9706 2.5581 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.3158 1.8729 -1.9140 30 1 2.1760 3.1804 -1.0663 31 1 5.2426 2.4155 -4.5048 32 1 4.1384 1.1468 2.5958 33 1 4.9581 3.1244 0.6588 34 1 5.0593 1.4643 0.0248 35 1 6.6179 0.0303 0.7941 36 1 9.0307 0.0372 1.4340 37 1 8.1679 -0.2247 2.9684 38 1 9.7494 1.5434 3.3833 39 1 9.2928 2.3917 1.8838 40 1 7.2617 3.7891 1.9558 41 1 6.0398 3.3353 3.1660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344959898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:56 Heat of formation + Delta-G solvation = -132.719694 kcal Electronic energy + Delta-G solvation = -24338.770689 eV Core-core repulsion = 20765.818376 eV Total energy + Delta-G solvation = -3572.952313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45793 -38.35752 -37.78231 -36.92849 -36.92065 -34.62979 -34.15773 -31.99233 -31.78675 -28.92200 -26.95241 -26.31044 -24.59510 -23.65596 -23.15936 -20.41644 -19.36412 -18.93742 -18.64550 -18.42682 -17.58723 -17.20654 -17.05640 -16.54287 -16.13779 -15.70645 -15.16920 -15.13448 -14.76422 -14.59855 -14.28695 -14.13806 -13.98038 -13.77494 -13.64043 -13.53420 -13.41635 -13.19203 -13.07864 -12.89083 -12.74326 -12.61613 -12.27087 -12.21019 -12.08674 -11.70112 -11.58412 -11.48678 -10.73257 -10.66426 -10.37880 -9.98187 -9.75437 -8.25499 -6.27682 -0.34686 1.04141 1.37086 1.42179 1.47896 2.02263 2.36717 2.59407 2.92149 3.09997 3.39890 3.70100 3.75587 3.93113 4.04447 4.22045 4.35126 4.36851 4.42927 4.47118 4.53570 4.59235 4.69161 4.73967 4.80417 4.96266 4.99530 5.00032 5.02751 5.04231 5.06419 5.40383 5.44418 5.48971 5.50933 5.78680 5.83126 6.14133 6.15378 6.35241 6.76319 7.36069 8.88287 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.006110 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.826538 B = 4581.841355 C = 5882.406472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.990 5.990 4 C 0.219 3.781 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.030 3.970 8 N -0.930 5.930 9 Si 0.913 3.087 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.248 1.248 13 S 2.798 3.202 14 O -1.001 7.001 15 O -1.013 7.013 16 N -1.111 6.111 17 C 0.163 3.837 18 C -0.182 4.182 19 C -0.122 4.122 20 C -0.123 4.123 21 C 0.049 3.951 22 O -0.392 6.392 23 C 0.098 3.902 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.420 0.580 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -4.041 10.510 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.831 5.831 4 C 0.094 3.906 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.170 4.170 8 N -0.570 5.570 9 Si 0.738 3.262 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.171 1.171 13 S 2.807 3.193 14 O -0.985 6.985 15 O -0.997 6.997 16 N -0.873 5.873 17 C 0.038 3.962 18 C -0.184 4.184 19 C -0.142 4.142 20 C -0.160 4.160 21 C -0.027 4.027 22 O -0.311 6.311 23 C 0.021 3.979 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.256 0.744 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.139 0.861 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.724 -3.276 10.892 11.696 hybrid contribution -0.021 0.206 -1.136 1.155 sum 2.702 -3.070 9.756 10.578 Atomic orbital electron populations 1.22199 0.95414 1.03335 1.01752 1.21252 0.94886 0.80963 1.03247 1.57473 1.79311 1.24229 1.22057 1.19351 0.97037 0.92032 0.82204 1.21580 1.06175 1.20409 1.08595 0.91772 1.25483 0.95705 0.98597 0.97239 1.69987 1.23445 1.43589 1.19998 0.86227 0.81317 0.80671 0.77996 1.20054 1.20759 1.17131 1.01214 0.72937 0.72933 0.72261 1.93547 1.66197 1.79514 1.59266 1.93522 1.87271 1.33236 1.85656 1.55687 1.23639 1.71159 1.36812 1.20172 0.83619 1.00566 0.91868 1.21595 0.96924 0.98278 1.01564 1.22464 0.96978 0.96545 0.98233 1.21201 0.94554 0.99270 1.00933 1.22904 0.90316 0.91974 0.97533 1.88084 1.34730 1.74145 1.34113 1.21349 0.90834 0.93410 0.92273 0.89269 0.93145 0.92734 0.90176 0.89986 0.93951 0.94715 0.92531 0.74450 0.91835 0.90678 0.87206 0.88030 0.88667 0.86081 0.92570 0.91395 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 10.24 71.98 0.74 -3.94 16 2 C 0.12 3.85 6.03 86.38 0.52 4.37 16 3 N -0.99 -37.75 2.84 -519.86 -1.48 -39.23 16 4 C 0.22 9.71 4.52 85.63 0.39 10.10 16 5 C -0.53 -26.62 9.05 25.60 0.23 -26.39 16 6 H 0.06 3.42 6.65 -2.91 -0.02 3.40 16 7 C 0.03 1.57 5.47 84.65 0.46 2.03 16 8 N -0.93 -52.79 13.96 21.45 0.30 -52.49 16 9 Si 0.91 41.57 27.37 68.60 1.88 43.45 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.25 -10.53 6.69 99.48 0.67 -9.87 16 13 S 2.80 105.07 6.06 -56.49 -0.34 104.73 16 14 O -1.00 -38.19 17.17 -128.00 -2.20 -40.39 16 15 O -1.01 -44.85 16.05 -128.00 -2.05 -46.90 16 16 N -1.11 -35.50 6.05 -190.79 -1.15 -36.65 16 17 C 0.16 5.67 6.21 85.63 0.53 6.20 16 18 C -0.18 -5.26 5.32 -15.58 -0.08 -5.35 16 19 C -0.12 -3.20 9.53 26.60 0.25 -2.95 16 20 C -0.12 -2.37 6.36 29.79 0.19 -2.18 16 21 C 0.05 0.95 6.89 72.02 0.50 1.44 16 22 O -0.39 -9.94 10.84 -148.98 -1.62 -11.56 16 23 C 0.10 2.60 6.76 71.09 0.48 3.08 16 24 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.05 1.47 7.97 -2.39 -0.02 1.46 16 26 H 0.05 1.55 8.11 -2.39 -0.02 1.53 16 27 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 28 H 0.08 2.27 7.78 -2.38 -0.02 2.25 16 29 H 0.04 1.82 7.50 -2.39 -0.02 1.81 16 30 H 0.03 1.63 5.94 -2.38 -0.01 1.62 16 31 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.42 11.21 8.65 -96.74 -0.84 10.37 16 33 H 0.06 2.43 7.75 -2.39 -0.02 2.41 16 34 H 0.08 2.99 5.55 -2.39 -0.01 2.98 16 35 H 0.11 3.02 7.83 -2.91 -0.02 3.00 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -64.78 344.70 -2.30 -67.08 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.15 Total: 25.52 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.21 Total: -13.56 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -2.33 Total: -128.37 kcal Atomic # 8 Polarization: -92.98 SS G_CDS: -5.87 Total: -98.84 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.88 Total: 43.45 kcal Atomic # 16 Polarization: 105.07 SS G_CDS: -0.34 Total: 104.73 kcal Total: -64.78 -2.30 -67.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344959898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.640 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds