Wall clock time and date at job start Fri Apr 10 2020 17:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30453 * 125.99278 * 2 1 4 4 N 1.39928 * 108.89861 * 179.97438 * 3 2 1 5 5 H 0.97003 * 125.75397 * 179.97438 * 4 3 2 6 6 C 1.34267 * 108.49537 * 359.74989 * 4 3 2 7 7 C 1.38049 * 107.41160 * 0.39550 * 6 4 3 8 8 C 1.47422 * 126.41062 * 179.87138 * 7 6 4 9 9 O 1.21606 * 120.00110 * 179.68719 * 8 7 6 10 10 N 1.34772 * 120.00486 * 359.68862 * 8 7 6 11 11 C 1.46505 * 120.00388 * 179.97438 * 10 8 7 12 12 C 1.51363 * 111.67236 * 68.06038 * 11 10 8 13 13 C 1.55698 * 104.22726 * 83.17754 * 12 11 10 14 14 C 1.56280 * 105.93602 * 7.82651 * 13 12 11 15 15 C 1.50518 * 101.75922 * 24.25669 * 14 13 12 16 16 H 1.08999 * 108.13163 * 66.24711 * 15 14 13 17 17 N 1.42694 * 128.16609 * 198.67580 * 15 14 13 18 18 C 1.36946 * 127.10087 * 331.03582 * 17 15 14 19 19 H 1.07990 * 119.99868 * 16.80581 * 18 17 15 20 20 C 1.38816 * 119.99781 * 196.80354 * 18 17 15 21 21 N 1.31622 * 119.99904 * 30.71996 * 20 18 17 22 22 Si 1.86799 * 119.99914 * 210.71588 * 20 18 17 23 23 H 1.48495 * 109.47027 * 60.00377 * 22 20 18 24 24 H 1.48502 * 109.46817 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47089 * 300.00090 * 22 20 18 26 26 C 1.49295 * 105.79550 * 151.29871 * 17 15 14 27 27 C 1.52138 * 111.49373 * 288.52821 * 11 10 8 28 28 H 1.09002 * 109.46874 * 270.04444 * 1 2 3 29 29 H 1.09003 * 109.46603 * 30.04197 * 1 2 3 30 30 H 1.08997 * 109.47293 * 150.03875 * 1 2 3 31 31 H 1.07998 * 126.29340 * 180.24623 * 6 4 3 32 32 H 0.97003 * 120.00086 * 0.02562 * 10 8 7 33 33 H 1.08998 * 110.10056 * 324.76171 * 12 11 10 34 34 H 1.09003 * 111.18472 * 202.12646 * 12 11 10 35 35 H 1.09005 * 110.15524 * 248.70731 * 13 12 11 36 36 H 1.09004 * 110.21791 * 126.97495 * 13 12 11 37 37 H 1.09005 * 110.96904 * 266.14202 * 14 13 12 38 38 H 1.09004 * 110.97162 * 142.37627 * 14 13 12 39 39 H 0.97000 * 120.00119 * 5.99300 * 21 20 18 40 40 H 1.08997 * 110.04441 * 110.36399 * 26 17 15 41 41 H 1.08998 * 110.04440 * 231.83683 * 26 17 15 42 42 H 1.09002 * 111.14788 * 43.77380 * 27 11 10 43 43 H 1.09004 * 111.14830 * 167.95125 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3843 1.2300 0.0004 6 6 3.6439 -0.6981 0.0065 7 6 2.3372 -1.1433 0.0006 8 6 1.8915 -2.5485 0.0013 9 8 0.7039 -2.8098 0.0013 10 7 2.8003 -3.5438 0.0018 11 6 2.3574 -4.9403 0.0031 12 6 1.6871 -5.3152 -1.3012 13 6 2.8692 -5.6645 -2.2524 14 6 4.1529 -5.6602 -1.3610 15 6 3.5796 -5.9334 0.0036 16 1 3.1700 -6.9435 0.0034 17 7 4.1808 -5.6974 1.2760 18 6 5.5181 -5.7012 1.5713 19 1 6.2465 -5.6260 0.7776 20 6 5.9372 -5.8018 2.8909 21 7 5.2105 -6.4677 3.7632 22 14 7.5325 -4.9924 3.4284 23 1 7.4504 -3.5292 3.1887 24 1 7.7533 -5.2459 4.8749 25 1 8.6623 -5.5591 2.6490 26 6 3.0507 -5.4517 2.2202 27 6 1.7604 -5.3346 1.3457 28 1 -0.3633 0.0008 1.0277 29 1 -0.3632 0.8897 -0.5145 30 1 -0.3634 -0.8903 -0.5132 31 1 4.5298 -1.3158 0.0122 32 1 3.7477 -3.3355 0.0022 33 1 1.1239 -4.4670 -1.6904 34 1 1.0336 -6.1784 -1.1744 35 1 2.9543 -4.9129 -3.0374 36 1 2.7204 -6.6509 -2.6919 37 1 4.6446 -4.6878 -1.3900 38 1 4.8392 -6.4519 -1.6616 39 1 4.4290 -6.9605 3.4678 40 1 2.9583 -6.2848 2.9170 41 1 3.2157 -4.5232 2.7668 42 1 1.0955 -4.5579 1.7238 43 1 1.2448 -6.2928 1.2808 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992070593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:13 Heat of formation + Delta-G solvation = 50.273460 kcal Electronic energy + Delta-G solvation = -26283.333494 eV Core-core repulsion = 22750.998254 eV Total energy + Delta-G solvation = -3532.335240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 5.52 seconds Orbital eigenvalues (eV) -42.48247 -41.74570 -39.19368 -36.39698 -34.54396 -33.90399 -33.65384 -31.92546 -30.79230 -28.92457 -28.39234 -27.40702 -25.80756 -24.38673 -22.33381 -21.92680 -21.38560 -20.71247 -20.03879 -19.39951 -18.95594 -17.44088 -17.21089 -16.45791 -16.27760 -15.93300 -15.82833 -15.50670 -15.22733 -15.01332 -14.79663 -14.53396 -14.10545 -13.88905 -13.72035 -13.53978 -13.37691 -12.97330 -12.95353 -12.47735 -12.46663 -12.22599 -12.12299 -11.99212 -11.93639 -11.78824 -11.54488 -11.36997 -11.14708 -10.65923 -10.51863 -10.35884 -10.02526 -9.69327 -8.95768 -8.25910 -5.27272 0.53905 1.11024 1.60172 1.67066 1.79208 1.85085 2.35919 2.54243 2.67236 3.02253 3.21161 3.50638 3.70370 3.76957 3.83550 4.05044 4.10970 4.22075 4.26137 4.33443 4.42501 4.46935 4.50373 4.59309 4.76015 4.78366 4.89441 4.90704 4.94008 4.96455 5.03537 5.05687 5.09712 5.19688 5.21204 5.38871 5.48833 5.50731 5.77415 5.82397 6.23523 6.31827 6.49485 6.78908 6.93051 7.43715 7.73659 8.42565 9.04583 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.005764 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.786345 B = 4856.157373 C = 5996.080058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.120 3.880 3 N -0.322 5.322 4 N -0.446 5.446 5 H 0.460 0.540 6 C 0.128 3.872 7 C -0.316 4.316 8 C 0.593 3.407 9 O -0.574 6.574 10 N -0.688 5.688 11 C 0.147 3.853 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.106 4.106 15 C 0.145 3.855 16 H 0.006 0.994 17 N -0.593 5.593 18 C -0.335 4.335 19 H 0.072 0.928 20 C -0.078 4.078 21 N -0.945 5.945 22 Si 1.108 2.892 23 H -0.276 1.276 24 H -0.303 1.303 25 H -0.274 1.274 26 C 0.152 3.848 27 C -0.117 4.117 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.214 0.786 32 H 0.402 0.598 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.253 0.747 40 H 0.012 0.988 41 H 0.010 0.990 42 H 0.067 0.933 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 10.681 -12.427 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 N -0.146 5.146 4 N -0.152 5.152 5 H 0.308 0.692 6 C -0.026 4.026 7 C -0.331 4.331 8 C 0.382 3.618 9 O -0.455 6.455 10 N -0.339 5.339 11 C 0.059 3.941 12 C -0.146 4.146 13 C -0.141 4.141 14 C -0.145 4.145 15 C 0.036 3.964 16 H 0.023 0.977 17 N -0.317 5.317 18 C -0.463 4.463 19 H 0.090 0.910 20 C -0.275 4.275 21 N -0.588 5.588 22 Si 0.933 3.067 23 H -0.202 1.202 24 H -0.230 1.230 25 H -0.200 1.200 26 C 0.027 3.973 27 C -0.156 4.156 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.231 0.769 32 H 0.238 0.762 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.122 12.075 -11.119 16.709 hybrid contribution -0.053 -1.304 -0.546 1.414 sum -3.174 10.771 -11.665 16.191 Atomic orbital electron populations 1.20314 0.85120 1.04097 1.03669 1.22730 0.98124 0.88837 0.95033 1.77070 0.87408 1.22606 1.27534 1.46097 1.07598 1.05601 1.55937 0.69178 1.23604 0.99216 0.85923 0.93902 1.20377 0.93484 0.93986 1.25244 1.17417 0.85351 0.83958 0.75118 1.90669 1.17228 1.84754 1.52814 1.45473 1.09548 1.04494 1.74343 1.21347 0.97024 0.81850 0.93876 1.21885 0.97701 1.01620 0.93378 1.22757 0.91797 1.02551 0.97031 1.21805 0.97916 1.01742 0.93020 1.21006 0.92421 0.94621 0.88317 0.97683 1.43796 1.01547 1.82130 1.04259 1.19921 0.81762 1.49722 0.94891 0.91001 1.26960 1.07133 0.99609 0.93772 1.70917 1.19326 1.29669 1.38879 0.82952 0.72407 0.76341 0.74972 1.20162 1.22965 1.19984 1.21963 0.86547 0.96493 0.92295 1.22474 0.95884 1.01445 0.95782 0.90164 0.89569 0.89717 0.76921 0.76200 0.91284 0.90280 0.90236 0.90224 0.91169 0.91790 0.93611 0.96982 0.97145 0.91410 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 9.92 71.24 0.71 -1.07 16 2 C 0.12 3.31 7.26 43.51 0.32 3.63 16 3 N -0.32 -8.23 12.63 -46.67 -0.59 -8.82 16 4 N -0.45 -8.44 7.29 -56.31 -0.41 -8.85 16 5 H 0.46 5.03 8.96 -213.43 -1.91 3.12 16 6 C 0.13 2.67 11.52 84.28 0.97 3.64 16 7 C -0.32 -8.82 6.13 -20.15 -0.12 -8.95 16 8 C 0.59 19.20 7.16 86.66 0.62 19.82 16 9 O -0.57 -21.09 13.07 -4.05 -0.05 -21.14 16 10 N -0.69 -21.83 4.40 -422.68 -1.86 -23.69 16 11 C 0.15 4.98 0.38 4.37 0.00 4.98 16 12 C -0.11 -3.04 6.06 30.99 0.19 -2.85 16 13 C -0.10 -2.50 6.93 32.67 0.23 -2.28 16 14 C -0.11 -3.19 6.45 30.93 0.20 -2.99 16 15 C 0.15 5.52 2.64 46.47 0.12 5.64 16 16 H 0.01 0.24 7.96 -2.39 -0.02 0.22 16 17 N -0.59 -27.85 3.01 -668.46 -2.01 -29.87 16 18 C -0.33 -17.37 10.01 84.03 0.84 -16.53 16 19 H 0.07 3.60 7.99 -2.92 -0.02 3.58 16 20 C -0.08 -4.29 5.15 84.86 0.44 -3.85 16 21 N -0.94 -57.13 13.01 21.65 0.28 -56.85 16 22 Si 1.11 48.47 30.01 68.60 2.06 50.53 16 23 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 C 0.15 7.14 5.84 86.99 0.51 7.65 16 27 C -0.12 -4.49 6.19 31.46 0.19 -4.29 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.26 6.55 -2.39 -0.02 2.24 16 31 H 0.21 3.16 7.46 -2.91 -0.02 3.13 16 32 H 0.40 12.19 6.66 -92.71 -0.62 11.57 16 33 H 0.07 2.05 6.84 -2.39 -0.02 2.03 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 2.01 7.28 -2.38 -0.02 1.99 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.25 15.71 6.06 -92.71 -0.56 15.14 16 40 H 0.01 0.65 6.16 -2.39 -0.01 0.63 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 2.67 7.19 -2.39 -0.02 2.65 16 43 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 Total: -1.00 -70.88 340.66 1.35 -69.53 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -1.27 Total: 26.61 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.21 Total: 2.56 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -4.59 Total: -128.08 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.06 Total: 50.53 kcal Total: -70.88 1.35 -69.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992070593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.804 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds