Wall clock time and date at job start Fri Apr 10 2020 17:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35565 * 125.82514 * 2 1 4 4 N 1.35408 * 107.15946 * 179.79524 * 3 2 1 5 5 H 0.96999 * 126.43887 * 180.24363 * 4 3 2 6 6 C 1.36658 * 107.12278 * 0.35758 * 4 3 2 7 7 C 1.47412 * 125.86699 * 179.89729 * 6 4 3 8 8 O 1.21605 * 119.99646 * 359.71680 * 7 6 4 9 9 N 1.34780 * 120.00411 * 179.72034 * 7 6 4 10 10 C 1.46498 * 119.99809 * 180.02562 * 9 7 6 11 11 C 1.51229 * 111.47176 * 68.10149 * 10 9 7 12 12 C 1.55794 * 104.61902 * 84.06326 * 11 10 9 13 13 C 1.56289 * 105.88759 * 7.24345 * 12 11 10 14 14 C 1.50514 * 101.78910 * 24.26324 * 13 12 11 15 15 H 1.08996 * 108.13248 * 66.22272 * 14 13 12 16 16 N 1.42700 * 128.17158 * 198.64251 * 14 13 12 17 17 C 1.36932 * 127.10974 * 331.77334 * 16 14 13 18 18 H 1.08009 * 119.99585 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00537 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99744 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00054 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46983 * 60.00043 * 21 19 17 23 23 H 1.48503 * 109.46831 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47057 * 299.99733 * 21 19 17 25 25 C 1.49307 * 105.79174 * 151.74261 * 16 14 13 26 26 C 1.52135 * 111.09307 * 288.30455 * 10 9 7 27 27 N 1.31619 * 108.27102 * 359.63988 * 6 4 3 28 28 H 1.09000 * 109.47097 * 269.99810 * 1 2 3 29 29 H 1.09001 * 109.47347 * 29.99704 * 1 2 3 30 30 H 1.08998 * 109.47204 * 150.00005 * 1 2 3 31 31 H 1.08004 * 126.42000 * 0.05930 * 3 2 1 32 32 H 0.96993 * 119.99423 * 359.97438 * 9 7 6 33 33 H 1.09001 * 110.40332 * 202.84267 * 11 10 9 34 34 H 1.08992 * 110.40869 * 325.16294 * 11 10 9 35 35 H 1.08997 * 110.19423 * 248.13905 * 12 11 10 36 36 H 1.09002 * 110.17104 * 126.33618 * 12 11 10 37 37 H 1.09002 * 110.97072 * 266.12667 * 13 12 11 38 38 H 1.09003 * 110.97182 * 142.40076 * 13 12 11 39 39 H 0.96995 * 119.99964 * 179.97438 * 20 19 17 40 40 H 1.08991 * 110.04996 * 110.60342 * 25 16 14 41 41 H 1.08998 * 110.04512 * 232.07808 * 25 16 14 42 42 H 1.09004 * 111.15107 * 168.13153 * 26 10 9 43 43 H 1.09005 * 111.18511 * 43.93077 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5832 0.6658 0.0046 5 1 4.3788 1.2207 0.0091 6 6 3.5465 -0.7003 -0.0008 7 6 4.7174 -1.5958 -0.0006 8 8 5.8401 -1.1286 -0.0005 9 7 4.5437 -2.9324 -0.0006 10 6 5.7074 -3.8222 0.0001 11 6 6.4652 -3.7414 1.3063 12 6 5.7145 -4.7205 2.2577 13 6 4.6614 -5.4576 1.3687 14 6 5.2759 -5.3368 0.0000 15 1 6.1969 -5.9196 -0.0110 16 7 4.6398 -5.4864 -1.2686 17 6 3.5443 -6.2553 -1.5579 18 1 3.0687 -6.8326 -0.7787 19 6 3.0449 -6.2929 -2.8526 20 7 3.6242 -5.5891 -3.8020 21 14 1.5500 -7.3413 -3.2470 22 1 0.3964 -6.8853 -2.4306 23 1 1.2189 -7.2087 -4.6886 24 1 1.8461 -8.7627 -2.9353 25 6 5.4150 -4.6309 -2.2153 26 6 6.4139 -3.8007 -1.3471 27 7 2.2860 -1.0791 -0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9710 2.1278 0.0009 32 1 3.6482 -3.3049 -0.0004 33 1 7.4974 -4.0631 1.1674 34 1 6.4342 -2.7261 1.7015 35 1 5.2138 -4.1649 3.0505 36 1 6.4137 -5.4390 2.6855 37 1 3.6958 -4.9535 1.4087 38 1 4.5659 -6.5029 1.6627 39 1 3.2756 -5.6156 -4.7067 40 1 5.9628 -5.2556 -2.9206 41 1 4.7417 -3.9626 -2.7520 42 1 7.3860 -4.2906 -1.2893 43 1 6.5113 -2.7828 -1.7246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992311449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:36 Heat of formation + Delta-G solvation = 60.265952 kcal Electronic energy + Delta-G solvation = -26168.916018 eV Core-core repulsion = 22637.014085 eV Total energy + Delta-G solvation = -3531.901933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 7.17 seconds Orbital eigenvalues (eV) -42.17053 -40.35388 -37.92307 -34.40617 -33.45625 -32.90003 -31.80669 -30.98363 -29.76646 -27.10507 -26.90676 -25.75002 -24.06923 -23.46829 -20.74866 -20.43302 -20.24929 -19.62331 -18.68858 -18.35733 -16.46259 -16.27625 -15.73899 -15.59243 -14.70645 -14.60550 -14.26672 -14.04754 -13.89958 -13.86676 -13.37980 -13.01091 -12.73217 -12.58655 -12.30386 -12.20823 -11.89532 -11.39289 -11.35989 -10.96987 -10.88134 -10.78051 -10.50456 -10.28763 -10.13281 -10.04470 -10.02372 -9.97045 -9.80972 -9.65043 -9.22768 -8.62702 -8.60699 -8.29286 -6.83430 -5.70365 -3.05054 1.51636 2.66632 2.76704 3.43183 3.47631 3.48387 3.66800 3.78958 4.45082 4.48962 4.64646 4.95181 5.12384 5.19903 5.24729 5.29500 5.51748 5.62552 5.70127 5.72523 5.73476 5.83130 5.94920 5.97129 5.99187 6.03711 6.15762 6.25747 6.32288 6.38449 6.43505 6.51770 6.64178 6.66353 6.83806 6.91675 7.13293 7.17452 7.53003 7.63250 7.79487 7.81503 8.12015 8.23235 8.56892 9.16867 9.83752 10.51684 11.41977 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011116 B = 0.006166 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.349563 B = 4539.905052 C = 5974.458727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.001 4.001 3 C -0.035 4.035 4 N -0.527 5.527 5 H 0.428 0.572 6 C 0.158 3.842 7 C 0.603 3.397 8 O -0.554 6.554 9 N -0.658 5.658 10 C 0.128 3.872 11 C -0.112 4.112 12 C -0.117 4.117 13 C -0.116 4.116 14 C 0.162 3.838 15 H 0.024 0.976 16 N -0.583 5.583 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.003 4.003 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.178 3.822 26 C -0.139 4.139 27 N -0.435 5.435 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.416 0.584 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.253 0.747 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 11.570 9.999 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 C -0.174 4.174 4 N -0.129 5.129 5 H 0.267 0.733 6 C -0.104 4.104 7 C 0.386 3.614 8 O -0.433 6.433 9 N -0.308 5.308 10 C 0.040 3.960 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.155 4.155 14 C 0.051 3.949 15 H 0.041 0.959 16 N -0.306 5.306 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.200 4.200 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.054 3.946 26 C -0.178 4.178 27 N -0.158 5.158 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.200 0.800 32 H 0.254 0.746 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.193 10.916 9.761 14.645 hybrid contribution -0.606 0.538 -0.420 0.913 sum -0.413 11.455 9.342 14.787 Atomic orbital electron populations 1.20050 0.87275 1.03001 1.02242 1.20911 0.96996 0.88041 1.07616 1.22634 0.83200 1.00790 1.10746 1.42880 1.08946 1.07645 1.53432 0.73331 1.22896 0.94058 0.82180 1.11292 1.16447 0.85213 0.82329 0.77449 1.90777 1.23526 1.76280 1.52698 1.45407 1.11311 1.03527 1.70528 1.21668 0.86672 0.93461 0.94196 1.21891 0.98788 0.99774 0.94579 1.22839 0.97464 0.97589 0.97599 1.21857 0.98477 1.00124 0.95017 1.20839 0.95197 0.90832 0.88032 0.95868 1.43662 1.32364 1.52365 1.02198 1.18953 1.03106 1.19683 0.94133 0.90301 1.24783 0.99300 0.99977 0.95894 1.69903 1.41640 1.43788 1.01198 0.86236 0.82720 0.79903 0.77114 1.21049 1.21717 1.21232 1.22025 0.90912 0.91599 0.90081 1.22812 0.98787 1.01034 0.95187 1.70206 0.99250 1.30694 1.15623 0.91377 0.91333 0.90708 0.80025 0.74565 0.90922 0.91312 0.92231 0.91863 0.91407 0.91634 0.93681 0.94563 0.91655 0.91422 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.42 36.00 0.38 -0.34 16 2 C 0.00 -0.02 7.07 -83.00 -0.59 -0.61 16 3 C -0.04 -0.39 11.91 -16.93 -0.20 -0.59 16 4 N -0.53 -6.74 6.14 -10.78 -0.07 -6.81 16 5 H 0.43 4.38 8.96 -40.82 -0.37 4.02 16 6 C 0.16 2.66 7.95 -154.52 -1.23 1.43 16 7 C 0.60 11.15 7.14 -12.52 -0.09 11.06 16 8 O -0.55 -10.76 15.25 5.27 0.08 -10.68 16 9 N -0.66 -12.56 4.39 -47.64 -0.21 -12.77 16 10 C 0.13 2.39 0.40 -130.71 -0.05 2.34 16 11 C -0.11 -1.78 6.04 -26.13 -0.16 -1.94 16 12 C -0.12 -1.68 6.94 -23.47 -0.16 -1.85 16 13 C -0.12 -1.99 6.46 -26.21 -0.17 -2.16 16 14 C 0.16 3.27 2.64 -68.72 -0.18 3.09 16 15 H 0.02 0.50 7.94 -51.93 -0.41 0.08 16 16 N -0.58 -14.34 3.12 -162.68 -0.51 -14.84 16 17 C -0.23 -6.22 10.29 -15.06 -0.15 -6.38 16 18 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 19 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 20 N -0.92 -26.81 10.55 55.49 0.59 -26.22 16 21 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.18 4.32 5.33 -0.75 0.00 4.32 16 26 C -0.14 -2.80 6.19 -25.44 -0.16 -2.96 16 27 N -0.43 -7.57 10.89 -7.50 -0.08 -7.65 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.42 8.53 7.49 -40.82 -0.31 8.22 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.14 6.86 -51.93 -0.36 0.78 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.20 7.38 -51.93 -0.38 0.82 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.04 0.95 7.98 -51.93 -0.41 0.54 16 41 H 0.07 1.79 7.05 -51.93 -0.37 1.43 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.39 7.18 -51.93 -0.37 1.01 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -31.96 345.67 -9.21 -41.17 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.33 Total: 10.35 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.87 Total: 5.25 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -0.28 Total: -68.30 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.96 -9.21 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992311449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.437 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.17 seconds