Wall clock time and date at job start Fri Apr 10 2020 17:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38550 * 120.01082 * 2 1 4 4 C 1.40079 * 117.81396 * 179.97438 * 3 2 1 5 5 C 1.48133 * 121.14343 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00396 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99828 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99579 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.50136 * 35.07002 * 8 7 5 10 10 C 1.53035 * 109.49847 * 274.99786 * 8 7 5 11 11 C 1.53041 * 109.54001 * 178.65426 * 10 8 7 12 12 C 1.53193 * 109.30945 * 61.36932 * 11 10 8 13 13 N 1.46932 * 108.77428 * 305.36377 * 12 11 10 14 14 C 1.36928 * 120.62883 * 233.58787 * 13 12 11 15 15 H 1.08001 * 119.99855 * 152.58140 * 14 13 12 16 16 C 1.38816 * 120.00302 * 332.58271 * 14 13 12 17 17 N 1.31625 * 119.99687 * 334.09603 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 154.10048 * 16 14 13 19 19 H 1.48496 * 109.47183 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47092 * 300.00089 * 18 16 14 21 21 H 1.48501 * 109.47421 * 59.99658 * 18 16 14 22 22 C 1.46921 * 118.73572 * 53.86298 * 13 12 11 23 23 H 1.09001 * 109.58789 * 65.93044 * 22 13 12 24 24 C 1.53003 * 109.58308 * 186.35070 * 22 13 12 25 25 C 1.39768 * 117.70580 * 0.28073 * 4 3 2 26 26 N 1.31891 * 119.65877 * 359.43380 * 25 4 3 27 27 N 1.28282 * 122.32649 * 0.59152 * 26 25 4 28 28 H 1.09005 * 109.47173 * 90.00266 * 1 2 3 29 29 H 1.09000 * 109.46633 * 209.99707 * 1 2 3 30 30 H 1.08998 * 109.47298 * 329.99479 * 1 2 3 31 31 H 1.07992 * 121.09158 * 359.95954 * 3 2 1 32 32 H 0.96996 * 119.99912 * 0.02562 * 7 5 4 33 33 H 1.09006 * 109.45942 * 58.63720 * 10 8 7 34 34 H 1.08998 * 109.45256 * 298.67238 * 10 8 7 35 35 H 1.08999 * 109.49582 * 301.41532 * 11 10 8 36 36 H 1.09001 * 109.52690 * 181.33441 * 11 10 8 37 37 H 1.09000 * 109.58243 * 185.58397 * 12 11 10 38 38 H 1.08998 * 109.70395 * 65.22183 * 12 11 10 39 39 H 0.96997 * 120.00244 * 354.51952 * 17 16 14 40 40 H 1.08994 * 109.47278 * 60.00082 * 24 22 13 41 41 H 1.09006 * 109.46769 * 180.02562 * 24 22 13 42 42 H 1.08994 * 109.47175 * 299.99845 * 24 22 13 43 43 H 1.08008 * 120.16645 * 179.70370 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1461 0.0006 5 6 4.4139 2.3836 0.0000 6 8 3.8688 3.4696 -0.0004 7 7 5.7594 2.3050 0.0001 8 6 6.5646 3.5289 0.0001 9 1 6.0620 4.2951 0.5904 10 6 6.7403 4.0248 -1.4370 11 6 7.5529 5.3217 -1.4352 12 6 8.9400 5.0495 -0.8447 13 7 8.7777 4.4373 0.4811 14 6 9.3954 4.9753 1.5783 15 1 8.9661 4.8403 2.5601 16 6 10.5734 5.6942 1.4289 17 7 11.3632 5.4575 0.4028 18 14 11.0379 6.9975 2.6838 19 1 12.3322 7.6158 2.2996 20 1 9.9831 8.0420 2.7263 21 1 11.1678 6.3706 4.0237 22 6 7.9450 3.2333 0.6060 23 1 8.4133 2.4079 0.0698 24 6 7.7911 2.8672 2.0836 25 6 4.2017 -0.1154 -0.0050 26 7 3.4484 -1.1980 0.0008 27 7 2.1668 -1.1420 0.0004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6781 2.1452 -0.0007 32 1 6.1946 1.4381 0.0000 33 1 5.7615 4.2102 -1.8794 34 1 7.2651 3.2683 -2.0204 35 1 7.0410 6.0709 -0.8314 36 1 7.6578 5.6873 -2.4567 37 1 9.4870 5.9875 -0.7494 38 1 9.4899 4.3703 -1.4960 39 1 11.1637 4.7281 -0.2047 40 1 7.3169 3.6924 2.6148 41 1 7.1734 1.9736 2.1740 42 1 8.7735 2.6745 2.5144 43 1 5.2782 -0.2030 -0.0096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993266069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:12 Heat of formation + Delta-G solvation = 36.020175 kcal Electronic energy + Delta-G solvation = -25053.784212 eV Core-core repulsion = 21520.830903 eV Total energy + Delta-G solvation = -3532.953309 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55926 -39.82660 -37.91160 -34.87640 -34.26794 -33.62871 -32.67706 -31.80337 -29.23054 -28.69429 -26.61745 -25.44129 -24.79580 -24.12009 -22.09410 -21.03053 -20.61907 -19.57808 -18.27881 -17.77170 -17.04479 -16.57178 -15.83725 -15.74369 -15.00496 -14.86848 -14.69424 -14.12990 -13.87618 -13.76420 -13.64970 -13.46562 -13.38655 -13.25133 -12.83094 -12.64931 -12.00669 -11.46663 -11.36556 -11.34195 -11.19545 -10.81611 -10.65963 -10.57144 -10.47899 -10.38669 -10.22008 -10.13507 -10.07464 -10.01444 -9.80919 -9.29163 -8.96737 -8.41259 -6.98735 -6.12746 -3.29271 0.01604 0.47301 2.55953 2.86922 3.31507 3.46478 3.50658 3.57557 3.67927 3.96208 4.10597 4.29534 4.45104 4.54713 4.72926 4.95049 5.07692 5.10951 5.17508 5.31730 5.35231 5.42297 5.47278 5.54408 5.57134 5.72039 5.78453 5.84047 6.00194 6.13284 6.22374 6.28481 6.34545 6.46408 6.49245 6.56011 6.78150 6.88062 7.03817 7.13372 7.36888 7.93979 8.01317 8.28785 8.51082 9.02526 9.77822 10.19628 11.15666 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.003125 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.209044 B = 8959.157228 C = 9136.117575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.066 3.934 3 C -0.061 4.061 4 C -0.122 4.122 5 C 0.558 3.442 6 O -0.525 6.525 7 N -0.706 5.706 8 C 0.130 3.870 9 H 0.091 0.909 10 C -0.118 4.118 11 C -0.134 4.134 12 C 0.147 3.853 13 N -0.588 5.588 14 C -0.352 4.352 15 H 0.063 0.937 16 C -0.021 4.021 17 N -0.913 5.913 18 Si 1.062 2.938 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.169 3.831 23 H 0.028 0.972 24 C -0.135 4.135 25 C 0.062 3.938 26 N -0.237 5.237 27 N -0.232 5.232 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.397 0.603 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.018 0.982 39 H 0.269 0.731 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.913 -9.224 -2.408 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.078 4.078 3 C -0.091 4.091 4 C -0.137 4.137 5 C 0.342 3.658 6 O -0.402 6.402 7 N -0.356 5.356 8 C 0.025 3.975 9 H 0.109 0.891 10 C -0.157 4.157 11 C -0.174 4.174 12 C 0.022 3.978 13 N -0.312 5.312 14 C -0.481 4.481 15 H 0.081 0.919 16 C -0.223 4.223 17 N -0.553 5.553 18 Si 0.892 3.108 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.220 1.220 22 C 0.061 3.939 23 H 0.045 0.955 24 C -0.193 4.193 25 C -0.103 4.103 26 N -0.077 5.077 27 N -0.076 5.076 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.180 0.820 32 H 0.232 0.768 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.168 -8.890 -1.994 18.559 hybrid contribution -0.760 -0.086 -0.430 0.878 sum -16.928 -8.976 -2.424 19.314 Atomic orbital electron populations 1.20723 0.86824 1.04432 1.03962 1.22971 0.99457 0.89875 0.95517 1.22519 0.93212 1.00698 0.92623 1.21392 0.95383 0.95491 1.01406 1.17879 0.82605 0.87733 0.77567 1.90801 1.71766 1.28310 1.49278 1.46069 1.05238 1.11028 1.73248 1.22009 0.92909 0.85218 0.97403 0.89093 1.21774 0.99635 0.98304 0.95948 1.22053 0.98854 0.96356 1.00096 1.21030 0.92827 0.98377 0.85595 1.44132 1.55576 1.26250 1.05290 1.19948 1.05589 1.34540 0.88005 0.91911 1.25822 0.91487 1.02787 1.02248 1.70789 1.35291 1.31790 1.17421 0.83567 0.76010 0.76471 0.74795 1.21114 1.22002 1.21977 1.20634 0.88407 0.90197 0.94638 0.95492 1.21803 1.01682 0.99406 0.96364 1.24551 1.02607 0.88823 0.94355 1.73053 0.99178 1.26791 1.08674 1.72837 1.01927 1.24983 1.07878 0.89528 0.89618 0.89874 0.81961 0.76822 0.92831 0.92571 0.92041 0.92621 0.89959 0.96373 0.92014 0.92500 0.94382 0.91582 0.80749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.19 36.01 0.37 -0.22 16 2 C 0.07 0.63 6.86 -82.45 -0.57 0.07 16 3 C -0.06 -0.61 9.43 -38.78 -0.37 -0.98 16 4 C -0.12 -1.38 5.92 -104.57 -0.62 -2.00 16 5 C 0.56 7.67 7.77 -12.19 -0.09 7.58 16 6 O -0.53 -8.99 16.16 5.35 0.09 -8.90 16 7 N -0.71 -9.30 4.56 -54.32 -0.25 -9.55 16 8 C 0.13 2.18 2.01 -67.59 -0.14 2.04 16 9 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 10 C -0.12 -1.96 5.46 -26.69 -0.15 -2.11 16 11 C -0.13 -2.47 6.08 -26.61 -0.16 -2.63 16 12 C 0.15 3.27 4.71 -3.71 -0.02 3.25 16 13 N -0.59 -13.69 2.85 -164.52 -0.47 -14.16 16 14 C -0.35 -9.20 8.52 -15.06 -0.13 -9.33 16 15 H 0.06 1.64 6.24 -52.49 -0.33 1.31 16 16 C -0.02 -0.57 4.66 -17.43 -0.08 -0.65 16 17 N -0.91 -26.30 12.42 55.49 0.69 -25.61 16 18 Si 1.06 24.52 29.99 -169.99 -5.10 19.42 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.17 3.20 3.05 -67.37 -0.21 2.99 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 C -0.14 -2.41 7.82 37.16 0.29 -2.12 16 25 C 0.06 0.64 10.84 -16.95 -0.18 0.46 16 26 N -0.24 -2.90 11.49 30.78 0.35 -2.55 16 27 N -0.23 -2.78 11.40 33.58 0.38 -2.39 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.16 1.43 7.80 -52.49 -0.41 1.02 16 32 H 0.40 4.13 6.76 -40.82 -0.28 3.85 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 2.07 6.31 -51.93 -0.33 1.74 16 38 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 39 H 0.27 7.77 6.77 -40.82 -0.28 7.50 16 40 H 0.06 1.08 7.46 -51.93 -0.39 0.70 16 41 H 0.04 0.55 7.82 -51.93 -0.41 0.14 16 42 H 0.07 1.28 7.60 -51.93 -0.39 0.89 16 43 H 0.18 1.32 6.54 -52.48 -0.34 0.97 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -31.78 347.35 -7.24 -39.02 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.13 Total: 3.13 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.05 Total: -3.64 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.71 Total: -54.26 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.10 Total: 19.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.78 -7.24 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993266069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds