Wall clock time and date at job start Fri Apr 10 2020 17:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38550 * 120.01082 * 2 1 4 4 C 1.40079 * 117.81396 * 179.97438 * 3 2 1 5 5 C 1.48133 * 121.14343 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00396 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99828 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99579 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.50136 * 35.07002 * 8 7 5 10 10 C 1.53035 * 109.49847 * 274.99786 * 8 7 5 11 11 C 1.53041 * 109.54001 * 178.65426 * 10 8 7 12 12 C 1.53193 * 109.30945 * 61.36932 * 11 10 8 13 13 N 1.46932 * 108.77428 * 305.36377 * 12 11 10 14 14 C 1.36928 * 120.62883 * 233.58787 * 13 12 11 15 15 H 1.08001 * 119.99855 * 152.58140 * 14 13 12 16 16 C 1.38816 * 120.00302 * 332.58271 * 14 13 12 17 17 N 1.31625 * 119.99687 * 334.09603 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 154.10048 * 16 14 13 19 19 H 1.48496 * 109.47183 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47092 * 300.00089 * 18 16 14 21 21 H 1.48501 * 109.47421 * 59.99658 * 18 16 14 22 22 C 1.46921 * 118.73572 * 53.86298 * 13 12 11 23 23 H 1.09001 * 109.58789 * 65.93044 * 22 13 12 24 24 C 1.53003 * 109.58308 * 186.35070 * 22 13 12 25 25 C 1.39768 * 117.70580 * 0.28073 * 4 3 2 26 26 N 1.31891 * 119.65877 * 359.43380 * 25 4 3 27 27 N 1.28282 * 122.32649 * 0.59152 * 26 25 4 28 28 H 1.09005 * 109.47173 * 90.00266 * 1 2 3 29 29 H 1.09000 * 109.46633 * 209.99707 * 1 2 3 30 30 H 1.08998 * 109.47298 * 329.99479 * 1 2 3 31 31 H 1.07992 * 121.09158 * 359.95954 * 3 2 1 32 32 H 0.96996 * 119.99912 * 0.02562 * 7 5 4 33 33 H 1.09006 * 109.45942 * 58.63720 * 10 8 7 34 34 H 1.08998 * 109.45256 * 298.67238 * 10 8 7 35 35 H 1.08999 * 109.49582 * 301.41532 * 11 10 8 36 36 H 1.09001 * 109.52690 * 181.33441 * 11 10 8 37 37 H 1.09000 * 109.58243 * 185.58397 * 12 11 10 38 38 H 1.08998 * 109.70395 * 65.22183 * 12 11 10 39 39 H 0.96997 * 120.00244 * 354.51952 * 17 16 14 40 40 H 1.08994 * 109.47278 * 60.00082 * 24 22 13 41 41 H 1.09006 * 109.46769 * 180.02562 * 24 22 13 42 42 H 1.08994 * 109.47175 * 299.99845 * 24 22 13 43 43 H 1.08008 * 120.16645 * 179.70370 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1461 0.0006 5 6 4.4139 2.3836 0.0000 6 8 3.8688 3.4696 -0.0004 7 7 5.7594 2.3050 0.0001 8 6 6.5646 3.5289 0.0001 9 1 6.0620 4.2951 0.5904 10 6 6.7403 4.0248 -1.4370 11 6 7.5529 5.3217 -1.4352 12 6 8.9400 5.0495 -0.8447 13 7 8.7777 4.4373 0.4811 14 6 9.3954 4.9753 1.5783 15 1 8.9661 4.8403 2.5601 16 6 10.5734 5.6942 1.4289 17 7 11.3632 5.4575 0.4028 18 14 11.0379 6.9975 2.6838 19 1 12.3322 7.6158 2.2996 20 1 9.9831 8.0420 2.7263 21 1 11.1678 6.3706 4.0237 22 6 7.9450 3.2333 0.6060 23 1 8.4133 2.4079 0.0698 24 6 7.7911 2.8672 2.0836 25 6 4.2017 -0.1154 -0.0050 26 7 3.4484 -1.1980 0.0008 27 7 2.1668 -1.1420 0.0004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6781 2.1452 -0.0007 32 1 6.1946 1.4381 0.0000 33 1 5.7615 4.2102 -1.8794 34 1 7.2651 3.2683 -2.0204 35 1 7.0410 6.0709 -0.8314 36 1 7.6578 5.6873 -2.4567 37 1 9.4870 5.9875 -0.7494 38 1 9.4899 4.3703 -1.4960 39 1 11.1637 4.7281 -0.2047 40 1 7.3169 3.6924 2.6148 41 1 7.1734 1.9736 2.1740 42 1 8.7735 2.6745 2.5144 43 1 5.2782 -0.2030 -0.0096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993266069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:11 Heat of formation + Delta-G solvation = 15.082042 kcal Electronic energy + Delta-G solvation = -25054.692158 eV Core-core repulsion = 21520.830903 eV Total energy + Delta-G solvation = -3533.861255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.41856 -41.02547 -39.40406 -36.28217 -35.10903 -34.71616 -34.10066 -33.41628 -30.85939 -29.32110 -28.10209 -26.94900 -26.13664 -24.95820 -23.59607 -22.58031 -21.76863 -21.13106 -19.38688 -18.82172 -18.66019 -17.42796 -17.14236 -16.67596 -16.39618 -16.12844 -15.93886 -15.61938 -15.46777 -15.06677 -14.89146 -14.77284 -14.50881 -14.24436 -13.83201 -13.53837 -13.25358 -13.06781 -12.99417 -12.78245 -12.57504 -12.14663 -12.06951 -11.97633 -11.93441 -11.85368 -11.73894 -11.60656 -11.41468 -11.09461 -10.86397 -10.77216 -10.47223 -10.18930 -8.92156 -8.20714 -5.34794 -0.84807 -0.27671 1.55551 1.59235 1.65911 1.75919 1.84347 2.45464 2.66812 2.87159 3.12015 3.22716 3.31295 3.41447 3.52500 3.70250 3.77612 3.90329 4.06134 4.09466 4.22351 4.30172 4.37122 4.49348 4.61814 4.64728 4.69821 4.73728 4.80939 4.82233 4.91323 4.97393 5.00548 5.05617 5.12835 5.24527 5.26775 5.27993 5.36070 5.51482 5.92775 6.29027 6.44033 6.92542 7.07757 7.48738 7.80648 8.23399 9.05430 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.003125 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.209044 B = 8959.157228 C = 9136.117575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.071 3.929 3 C -0.057 4.057 4 C -0.131 4.131 5 C 0.565 3.435 6 O -0.560 6.560 7 N -0.695 5.695 8 C 0.147 3.853 9 H 0.064 0.936 10 C -0.111 4.111 11 C -0.124 4.124 12 C 0.152 3.848 13 N -0.607 5.607 14 C -0.346 4.346 15 H 0.060 0.940 16 C -0.073 4.073 17 N -0.943 5.943 18 Si 1.106 2.894 19 H -0.295 1.295 20 H -0.284 1.284 21 H -0.277 1.277 22 C 0.165 3.835 23 H 0.038 0.962 24 C -0.127 4.127 25 C 0.068 3.932 26 N -0.262 5.262 27 N -0.256 5.256 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.413 0.587 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.256 0.744 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.905 -10.281 -2.404 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.075 4.075 3 C -0.087 4.087 4 C -0.146 4.146 5 C 0.351 3.649 6 O -0.439 6.439 7 N -0.346 5.346 8 C 0.041 3.959 9 H 0.082 0.918 10 C -0.149 4.149 11 C -0.164 4.164 12 C 0.027 3.973 13 N -0.332 5.332 14 C -0.476 4.476 15 H 0.078 0.922 16 C -0.270 4.270 17 N -0.585 5.585 18 Si 0.932 3.068 19 H -0.221 1.221 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.058 3.942 23 H 0.056 0.944 24 C -0.185 4.185 25 C -0.097 4.097 26 N -0.101 5.101 27 N -0.099 5.099 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.192 0.808 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -18.191 -10.014 -1.985 20.860 hybrid contribution -0.247 0.190 -0.439 0.539 sum -18.437 -9.824 -2.425 21.032 Atomic orbital electron populations 1.20884 0.84156 1.05607 1.05227 1.23469 1.01080 0.88876 0.94048 1.22775 0.92942 1.01511 0.91438 1.21178 0.95667 0.94558 1.03147 1.18102 0.82448 0.87991 0.76347 1.90791 1.72369 1.29865 1.50882 1.45796 1.05084 1.10623 1.73126 1.21479 0.91574 0.85933 0.96915 0.91786 1.21707 0.99745 0.97516 0.95971 1.21912 0.96504 0.97252 1.00694 1.20886 0.94491 0.96444 0.85487 1.44351 1.55924 1.28042 1.04908 1.20152 1.04956 1.33639 0.88838 0.92209 1.26952 0.92005 1.04678 1.03373 1.70893 1.36568 1.32381 1.18697 0.82955 0.75394 0.74736 0.73735 1.22073 1.21086 1.20239 1.20814 0.88770 0.88818 0.95765 0.94410 1.21721 1.01104 1.00464 0.95177 1.24856 1.03672 0.87944 0.93264 1.73009 0.99649 1.27639 1.09796 1.72776 1.02113 1.26297 1.08702 0.88046 0.89242 0.87906 0.80753 0.74881 0.91989 0.91115 0.93423 0.90428 0.93582 0.96943 0.93418 0.94135 0.90510 0.93544 0.78256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.19 71.24 0.73 -0.15 16 2 C 0.07 1.19 6.86 42.63 0.29 1.48 16 3 C -0.06 -1.01 9.43 22.79 0.22 -0.80 16 4 C -0.13 -2.67 5.92 -19.83 -0.12 -2.78 16 5 C 0.57 14.33 7.77 86.87 0.67 15.00 16 6 O -0.56 -18.34 16.16 -3.76 -0.06 -18.40 16 7 N -0.70 -16.59 4.56 -444.07 -2.03 -18.62 16 8 C 0.15 4.72 2.01 45.21 0.09 4.81 16 9 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 10 C -0.11 -3.47 5.46 30.62 0.17 -3.31 16 11 C -0.12 -4.50 6.08 30.67 0.19 -4.31 16 12 C 0.15 6.87 4.71 86.36 0.41 7.28 16 13 N -0.61 -28.46 2.85 -674.41 -1.92 -30.38 16 14 C -0.35 -18.32 8.52 84.04 0.72 -17.60 16 15 H 0.06 3.15 6.24 -2.91 -0.02 3.13 16 16 C -0.07 -4.04 4.66 84.86 0.40 -3.65 16 17 N -0.94 -55.82 12.42 21.65 0.27 -55.55 16 18 Si 1.11 50.18 29.99 68.60 2.06 52.24 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.16 6.06 3.05 45.12 0.14 6.20 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 C -0.13 -4.38 7.82 71.98 0.56 -3.82 16 25 C 0.07 1.26 10.84 85.05 0.92 2.18 16 26 N -0.26 -5.95 11.49 -56.52 -0.65 -6.60 16 27 N -0.26 -5.66 11.40 -47.68 -0.54 -6.21 16 28 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.18 2.65 7.80 -2.91 -0.02 2.62 16 32 H 0.41 7.24 6.76 -92.71 -0.63 6.61 16 33 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.05 2.39 6.31 -2.39 -0.02 2.38 16 38 H 0.01 0.57 7.88 -2.39 -0.02 0.55 16 39 H 0.26 15.30 6.77 -92.71 -0.63 14.67 16 40 H 0.04 1.51 7.46 -2.39 -0.02 1.49 16 41 H 0.08 2.01 7.82 -2.38 -0.02 1.99 16 42 H 0.05 1.77 7.60 -2.39 -0.02 1.75 16 43 H 0.20 2.37 6.54 -2.91 -0.02 2.35 16 Total: -1.00 -70.35 347.35 3.05 -67.30 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.54 Total: 15.69 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 5.38 Total: 0.53 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.87 Total: -117.35 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.40 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.06 Total: 52.24 kcal Total: -70.35 3.05 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993266069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.385 kcal (2) G-P(sol) polarization free energy of solvation -70.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds