Wall clock time and date at job start Fri Apr 10 2020 17:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00018 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46305 * 275.02415 * 10 9 7 12 12 C 1.53189 * 109.31452 * 178.59926 * 11 10 9 13 13 N 1.46927 * 108.76100 * 54.65933 * 12 11 10 14 14 C 1.34783 * 120.63080 * 126.36450 * 13 12 11 15 15 O 1.21281 * 119.99821 * 180.02562 * 14 13 12 16 16 C 1.50693 * 119.99880 * 0.02562 * 14 13 12 17 17 H 1.08999 * 115.55048 * 34.42333 * 16 14 13 18 18 C 1.52998 * 117.50201 * 248.74782 * 16 14 13 19 19 C 1.53001 * 117.49804 * 180.08856 * 16 14 13 20 20 H 1.08998 * 117.50139 * 0.02562 * 19 16 14 21 21 C 1.50701 * 117.49660 * 214.98167 * 19 16 14 22 22 C 1.34665 * 126.59512 * 324.68704 * 21 19 16 23 23 N 1.34131 * 108.02160 * 179.87925 * 22 21 19 24 24 C 1.30494 * 109.25470 * 0.39463 * 23 22 21 25 25 N 1.35040 * 108.70019 * 359.76087 * 24 23 22 26 26 H 0.97008 * 126.39520 * 180.02562 * 25 24 23 27 27 C 1.46928 * 118.74155 * 306.38458 * 13 12 11 28 28 C 1.53049 * 109.45610 * 154.97075 * 10 9 7 29 29 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46125 * 35.00594 * 10 9 7 32 32 H 1.09004 * 109.49877 * 298.57113 * 11 10 9 33 33 H 1.09002 * 109.49371 * 58.66307 * 11 10 9 34 34 H 1.09004 * 109.60085 * 294.87375 * 12 11 10 35 35 H 1.08997 * 109.70752 * 174.50467 * 12 11 10 36 36 H 1.08997 * 117.49637 * 0.02562 * 18 16 14 37 37 H 1.09006 * 117.49824 * 145.01967 * 18 16 14 38 38 H 1.08000 * 125.99121 * 0.02562 * 22 21 19 39 39 H 1.08005 * 125.64671 * 179.73500 * 24 23 22 40 40 H 1.09013 * 109.58459 * 293.82275 * 27 13 12 41 41 H 1.08996 * 109.59204 * 173.39995 * 27 13 12 42 42 H 1.08999 * 109.49786 * 301.33904 * 28 10 9 43 43 H 1.08999 * 109.49790 * 61.40439 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 2.4225 -4.0352 -1.4368 12 6 3.2185 -5.3440 -1.4299 13 7 2.4412 -6.3660 -0.7158 14 6 2.1723 -7.5532 -1.2946 15 8 1.5292 -8.3884 -0.6947 16 6 2.6707 -7.8427 -2.6869 17 1 3.6374 -7.4074 -2.9402 18 6 1.6290 -7.9475 -3.8026 19 6 2.3308 -9.2074 -3.2894 20 1 1.7463 -9.8956 -2.6789 21 6 3.3579 -9.8465 -4.1880 22 6 4.1820 -9.2122 -5.0436 23 7 4.9410 -10.1365 -5.6509 24 6 4.6128 -11.3201 -5.2103 25 7 3.6284 -11.1840 -4.2959 26 1 3.1943 -11.9004 -3.8065 27 6 1.9622 -6.0692 0.6411 28 6 1.1807 -4.7521 0.6111 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.9687 -3.5504 0.5901 32 1 1.5114 -4.1662 -2.0207 33 1 3.0278 -3.2438 -1.8790 34 1 4.1715 -5.1898 -0.9237 35 1 3.3975 -5.6708 -2.4542 36 1 0.5833 -7.8067 -3.5296 37 1 1.9106 -7.5815 -4.7900 38 1 4.2259 -8.1460 -5.2098 39 1 5.0549 -12.2538 -5.5251 40 1 2.8128 -5.9741 1.3163 41 1 1.3102 -6.8732 0.9826 42 1 0.9020 -4.4711 1.6267 43 1 0.2811 -4.8759 0.0081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996685183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:15 Heat of formation + Delta-G solvation = 60.771923 kcal Electronic energy + Delta-G solvation = -24368.874042 eV Core-core repulsion = 20836.994049 eV Total energy + Delta-G solvation = -3531.879993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.38371 -40.30015 -37.88703 -36.49245 -34.51131 -32.80174 -32.08307 -30.92977 -29.60190 -29.20030 -25.64651 -24.13788 -23.54800 -23.01820 -22.15241 -21.91443 -20.74440 -20.07277 -18.65942 -18.48167 -17.20389 -17.03955 -16.02190 -15.25382 -15.20334 -14.85828 -14.71783 -14.64523 -14.09229 -13.78908 -13.74605 -13.60047 -13.45139 -13.19252 -12.58375 -12.38055 -12.26785 -11.97304 -11.58842 -11.26855 -10.98497 -10.92060 -10.87182 -10.84244 -10.51357 -10.30004 -10.27749 -10.22458 -9.86464 -9.78346 -9.69134 -8.94177 -8.56010 -8.53232 -7.00859 -5.80540 -3.09836 1.59953 2.45285 2.69145 2.83116 3.06263 3.40479 3.46187 3.48453 3.73942 4.17098 4.42894 4.43517 4.54780 4.55433 4.74528 4.81203 5.03606 5.10942 5.22350 5.27361 5.30838 5.38656 5.45255 5.51174 5.58904 5.63745 5.68470 5.71655 5.91992 5.97428 5.99590 6.19961 6.35101 6.35351 6.39928 6.48191 6.58863 6.86300 7.01077 7.02975 7.46678 7.66207 7.74319 8.17259 8.37640 9.49046 10.06354 10.40929 11.42046 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.002691 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.754179 B =10404.461990 C =11061.073458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.106 3.894 13 N -0.599 5.599 14 C 0.544 3.456 15 O -0.552 6.552 16 C -0.171 4.171 17 H 0.130 0.870 18 C -0.129 4.129 19 C -0.059 4.059 20 H 0.124 0.876 21 C 0.013 3.987 22 C -0.023 4.023 23 N -0.492 5.492 24 C 0.182 3.818 25 N -0.565 5.565 26 H 0.420 0.580 27 C 0.116 3.884 28 C -0.139 4.139 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.169 0.831 39 H 0.209 0.791 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -22.100 -7.400 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.191 4.191 12 C -0.017 4.017 13 N -0.331 5.331 14 C 0.332 3.668 15 O -0.431 6.431 16 C -0.193 4.193 17 H 0.148 0.852 18 C -0.167 4.167 19 C -0.079 4.079 20 H 0.142 0.858 21 C -0.102 4.102 22 C -0.171 4.171 23 N -0.211 5.211 24 C -0.102 4.102 25 N -0.168 5.168 26 H 0.258 0.742 27 C -0.007 4.007 28 C -0.178 4.178 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.187 0.813 39 H 0.225 0.775 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.902 -22.162 -7.668 24.446 hybrid contribution -0.559 0.562 0.766 1.103 sum 6.343 -21.601 -6.901 23.547 Atomic orbital electron populations 1.69670 1.05132 1.25587 1.57633 1.24757 0.95505 0.97735 1.02972 0.86138 0.78786 0.84180 0.77202 1.20537 1.21872 1.21886 1.19272 0.90992 0.84066 1.42708 0.91105 1.42441 1.05810 0.99712 1.88488 1.20170 0.94439 0.86075 0.92489 1.22668 1.00096 0.94671 1.01710 1.21924 0.94472 0.88703 0.96614 1.48071 1.53639 1.14585 1.16797 1.19508 0.79290 0.81516 0.86442 1.90658 1.41095 1.46452 1.64936 1.22414 1.02416 1.01260 0.93163 0.85182 1.23161 0.97855 0.98177 0.97482 1.20145 0.98095 0.90341 0.99343 0.85807 1.20330 1.02754 0.83546 1.03599 1.22066 0.96966 0.99584 0.98453 1.70299 1.25838 0.98733 1.26231 1.24982 0.92486 0.99273 0.93426 1.43197 1.31383 1.07871 1.34339 0.74182 1.21640 0.98770 0.98108 0.82162 1.22206 0.99201 0.94091 1.02264 0.93534 0.78271 0.93421 0.92090 0.90576 0.91465 0.90171 0.87326 0.86997 0.81350 0.77492 0.91514 0.89401 0.90537 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.42 5.12 -53.38 -0.27 -17.70 16 10 C 0.18 3.30 2.73 -67.88 -0.19 3.12 16 11 C -0.15 -2.40 5.66 -26.61 -0.15 -2.55 16 12 C 0.11 1.30 6.30 -3.71 -0.02 1.28 16 13 N -0.60 -8.02 2.97 -172.77 -0.51 -8.54 16 14 C 0.54 7.37 7.48 -10.99 -0.08 7.29 16 15 O -0.55 -9.08 15.67 5.56 0.09 -8.99 16 16 C -0.17 -1.73 4.48 -91.78 -0.41 -2.14 16 17 H 0.13 1.15 6.66 -51.93 -0.35 0.80 16 18 C -0.13 -1.13 9.76 -26.70 -0.26 -1.39 16 19 C -0.06 -0.55 5.85 -91.73 -0.54 -1.09 16 20 H 0.12 1.23 7.67 -51.93 -0.40 0.83 16 21 C 0.01 0.12 6.92 -81.60 -0.56 -0.44 16 22 C -0.02 -0.23 10.94 -17.81 -0.19 -0.43 16 23 N -0.49 -5.48 11.25 -14.67 -0.17 -5.64 16 24 C 0.18 1.41 13.04 -90.38 -1.18 0.23 16 25 N -0.56 -4.00 6.15 -10.30 -0.06 -4.06 16 26 H 0.42 1.71 8.96 -40.82 -0.37 1.35 16 27 C 0.12 1.61 6.43 -3.71 -0.02 1.59 16 28 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 31 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.80 5.67 -51.93 -0.29 0.51 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 0.82 7.94 -51.93 -0.41 0.40 16 38 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.21 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -34.00 354.70 -10.16 -44.16 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.27 Total: 9.44 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -4.01 Total: -3.94 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.29 Total: -62.91 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.00 -10.16 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996685183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.930 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds