Wall clock time and date at job start Fri Apr 10 2020 17:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00018 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46305 * 275.02415 * 10 9 7 12 12 C 1.53189 * 109.31452 * 178.59926 * 11 10 9 13 13 N 1.46927 * 108.76100 * 54.65933 * 12 11 10 14 14 C 1.34783 * 120.63080 * 126.36450 * 13 12 11 15 15 O 1.21281 * 119.99821 * 180.02562 * 14 13 12 16 16 C 1.50693 * 119.99880 * 0.02562 * 14 13 12 17 17 H 1.08999 * 115.55048 * 34.42333 * 16 14 13 18 18 C 1.52998 * 117.50201 * 248.74782 * 16 14 13 19 19 C 1.53001 * 117.49804 * 180.08856 * 16 14 13 20 20 H 1.08998 * 117.50139 * 0.02562 * 19 16 14 21 21 C 1.50701 * 117.49660 * 214.98167 * 19 16 14 22 22 C 1.34665 * 126.59512 * 324.68704 * 21 19 16 23 23 N 1.34131 * 108.02160 * 179.87925 * 22 21 19 24 24 C 1.30494 * 109.25470 * 0.39463 * 23 22 21 25 25 N 1.35040 * 108.70019 * 359.76087 * 24 23 22 26 26 H 0.97008 * 126.39520 * 180.02562 * 25 24 23 27 27 C 1.46928 * 118.74155 * 306.38458 * 13 12 11 28 28 C 1.53049 * 109.45610 * 154.97075 * 10 9 7 29 29 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46125 * 35.00594 * 10 9 7 32 32 H 1.09004 * 109.49877 * 298.57113 * 11 10 9 33 33 H 1.09002 * 109.49371 * 58.66307 * 11 10 9 34 34 H 1.09004 * 109.60085 * 294.87375 * 12 11 10 35 35 H 1.08997 * 109.70752 * 174.50467 * 12 11 10 36 36 H 1.08997 * 117.49637 * 0.02562 * 18 16 14 37 37 H 1.09006 * 117.49824 * 145.01967 * 18 16 14 38 38 H 1.08000 * 125.99121 * 0.02562 * 22 21 19 39 39 H 1.08005 * 125.64671 * 179.73500 * 24 23 22 40 40 H 1.09013 * 109.58459 * 293.82275 * 27 13 12 41 41 H 1.08996 * 109.59204 * 173.39995 * 27 13 12 42 42 H 1.08999 * 109.49786 * 301.33904 * 28 10 9 43 43 H 1.08999 * 109.49790 * 61.40439 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 2.4225 -4.0352 -1.4368 12 6 3.2185 -5.3440 -1.4299 13 7 2.4412 -6.3660 -0.7158 14 6 2.1723 -7.5532 -1.2946 15 8 1.5292 -8.3884 -0.6947 16 6 2.6707 -7.8427 -2.6869 17 1 3.6374 -7.4074 -2.9402 18 6 1.6290 -7.9475 -3.8026 19 6 2.3308 -9.2074 -3.2894 20 1 1.7463 -9.8956 -2.6789 21 6 3.3579 -9.8465 -4.1880 22 6 4.1820 -9.2122 -5.0436 23 7 4.9410 -10.1365 -5.6509 24 6 4.6128 -11.3201 -5.2103 25 7 3.6284 -11.1840 -4.2959 26 1 3.1943 -11.9004 -3.8065 27 6 1.9622 -6.0692 0.6411 28 6 1.1807 -4.7521 0.6111 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.9687 -3.5504 0.5901 32 1 1.5114 -4.1662 -2.0207 33 1 3.0278 -3.2438 -1.8790 34 1 4.1715 -5.1898 -0.9237 35 1 3.3975 -5.6708 -2.4542 36 1 0.5833 -7.8067 -3.5296 37 1 1.9106 -7.5815 -4.7900 38 1 4.2259 -8.1460 -5.2098 39 1 5.0549 -12.2538 -5.5251 40 1 2.8128 -5.9741 1.3163 41 1 1.3102 -6.8732 0.9826 42 1 0.9020 -4.4711 1.6267 43 1 0.2811 -4.8759 0.0081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996685183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:14 Heat of formation + Delta-G solvation = 39.276032 kcal Electronic energy + Delta-G solvation = -24369.806174 eV Core-core repulsion = 20836.994049 eV Total energy + Delta-G solvation = -3532.812124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -43.01258 -41.35660 -39.06482 -37.46327 -36.13037 -33.82227 -33.42633 -32.16295 -31.02367 -30.15833 -27.00004 -25.52156 -24.39038 -24.26963 -23.43430 -22.53227 -21.66031 -21.14591 -19.80385 -19.20962 -19.00727 -18.07902 -17.08698 -16.69061 -16.24533 -15.88023 -15.57737 -15.54186 -15.38790 -15.32335 -14.97963 -14.69097 -14.49135 -14.35752 -13.83282 -13.48345 -13.31778 -13.14135 -12.90977 -12.86552 -12.62225 -12.20911 -12.09951 -11.99687 -11.93992 -11.68986 -11.67874 -11.29346 -10.99261 -10.97573 -10.91895 -10.76517 -9.68198 -9.21900 -8.99185 -7.92236 -5.20678 0.95495 1.46876 1.49390 1.49719 1.59471 1.90542 2.17935 2.27315 2.57836 2.96912 3.37549 3.42017 3.68154 3.73595 3.81573 3.90650 3.95284 4.07364 4.08150 4.12620 4.21155 4.38421 4.42986 4.46973 4.61248 4.64239 4.77100 4.81288 4.83284 4.87508 4.89565 5.02476 5.06542 5.09495 5.32146 5.33127 5.51359 5.56007 5.64200 5.75522 6.29678 6.40725 6.55223 7.11090 7.12849 7.35762 8.11803 8.34388 9.31660 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.002691 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.754179 B =10404.461990 C =11061.073458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.140 4.140 12 C 0.114 3.886 13 N -0.602 5.602 14 C 0.541 3.459 15 O -0.586 6.586 16 C -0.175 4.175 17 H 0.149 0.851 18 C -0.120 4.120 19 C -0.051 4.051 20 H 0.116 0.884 21 C 0.006 3.994 22 C -0.038 4.038 23 N -0.537 5.537 24 C 0.192 3.808 25 N -0.558 5.558 26 H 0.434 0.566 27 C 0.122 3.878 28 C -0.127 4.127 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.176 0.824 39 H 0.245 0.755 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.457 -23.556 -8.285 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.225 1.225 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.180 4.180 12 C -0.008 4.008 13 N -0.333 5.333 14 C 0.331 3.669 15 O -0.467 6.467 16 C -0.196 4.196 17 H 0.166 0.834 18 C -0.157 4.157 19 C -0.071 4.071 20 H 0.134 0.866 21 C -0.110 4.110 22 C -0.186 4.186 23 N -0.256 5.256 24 C -0.092 4.092 25 N -0.162 5.162 26 H 0.274 0.726 27 C -0.001 4.001 28 C -0.166 4.166 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.193 0.807 39 H 0.261 0.739 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.931 -23.666 -8.551 26.701 hybrid contribution -1.168 0.883 1.054 1.804 sum 7.763 -22.783 -7.498 25.210 Atomic orbital electron populations 1.69828 1.06684 1.25800 1.60047 1.25546 0.96303 1.01074 1.04228 0.85118 0.78444 0.80095 0.76404 1.18715 1.22347 1.22499 1.19662 0.91493 0.85026 1.40130 0.90244 1.42678 1.05390 1.01084 1.88624 1.20435 0.94231 0.84592 0.94355 1.22435 0.99963 0.96586 0.99066 1.21941 0.93941 0.86316 0.98619 1.48143 1.53631 1.14948 1.16553 1.20058 0.78492 0.80935 0.87398 1.90643 1.42580 1.47448 1.66022 1.22400 1.03455 1.02420 0.91367 0.83372 1.23235 0.97162 0.97635 0.97707 1.20031 0.97973 0.90050 0.99054 0.86624 1.20255 1.02764 0.84388 1.03617 1.22293 0.97277 1.00183 0.98810 1.70289 1.27351 1.00109 1.27900 1.25718 0.91543 0.99741 0.92185 1.43217 1.31141 1.07678 1.34163 0.72551 1.21524 0.99034 0.96337 0.83189 1.22051 0.98568 0.94573 1.01420 0.94228 0.79881 0.93320 0.93386 0.91493 0.89758 0.87158 0.88046 0.85134 0.80658 0.73885 0.89847 0.89840 0.91073 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.23 -12.34 9.93 84.04 0.83 -11.51 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -35.88 5.12 -322.79 -1.65 -37.53 16 10 C 0.17 6.27 2.73 45.02 0.12 6.39 16 11 C -0.14 -4.28 5.66 30.67 0.17 -4.11 16 12 C 0.11 2.50 6.30 86.36 0.54 3.04 16 13 N -0.60 -14.98 2.97 -818.90 -2.43 -17.42 16 14 C 0.54 13.79 7.48 87.65 0.66 14.45 16 15 O -0.59 -18.81 15.67 -3.03 -0.05 -18.85 16 16 C -0.18 -3.16 4.48 -11.54 -0.05 -3.21 16 17 H 0.15 2.13 6.66 -2.39 -0.02 2.11 16 18 C -0.12 -1.86 9.76 30.62 0.30 -1.57 16 19 C -0.05 -0.86 5.85 -11.52 -0.07 -0.92 16 20 H 0.12 2.16 7.67 -2.39 -0.02 2.14 16 21 C 0.01 0.10 6.92 40.95 0.28 0.38 16 22 C -0.04 -0.71 10.94 83.52 0.91 0.20 16 23 N -0.54 -10.98 11.25 -200.31 -2.25 -13.23 16 24 C 0.19 2.48 13.04 180.27 2.35 4.83 16 25 N -0.56 -6.62 6.15 -186.50 -1.15 -7.76 16 26 H 0.43 2.52 8.96 -92.70 -0.83 1.69 16 27 C 0.12 3.26 6.43 86.36 0.56 3.81 16 28 C -0.13 -4.06 5.55 30.67 0.17 -3.89 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 30 H 0.37 19.76 7.80 -92.71 -0.72 19.03 16 31 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.11 1.81 5.67 -2.39 -0.01 1.79 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.13 1.56 7.94 -2.38 -0.02 1.54 16 38 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.25 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.08 2.35 7.00 -2.39 -0.02 2.33 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -74.12 354.70 1.51 -72.61 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.51 Total: 29.78 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 7.25 Total: 3.88 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -7.20 Total: -134.77 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.12 1.51 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996685183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.885 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds