Wall clock time and date at job start Fri Apr 10 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86798 * 120.00515 * 2 1 4 4 H 1.48501 * 109.47303 * 270.00314 * 3 2 1 5 5 H 1.48510 * 109.47079 * 30.00125 * 3 2 1 6 6 H 1.48498 * 109.47361 * 149.99916 * 3 2 1 7 7 C 1.38819 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99644 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45703 * 154.99384 * 10 9 7 12 12 C 1.53193 * 109.31343 * 181.38412 * 11 10 9 13 13 N 1.46930 * 108.77279 * 305.36916 * 12 11 10 14 14 C 1.34770 * 120.63040 * 233.58018 * 13 12 11 15 15 O 1.21280 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00068 * 180.02562 * 14 13 12 17 17 C 1.53009 * 109.46971 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46970 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.00040 * 125.00060 * 18 17 16 20 20 N 1.32124 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.32158 * 120.00097 * 359.97438 * 20 19 18 22 22 C 1.38336 * 120.00075 * 0.26620 * 21 20 19 23 23 N 1.32127 * 120.00065 * 304.97848 * 18 17 16 24 24 C 1.46928 * 118.73933 * 53.86036 * 13 12 11 25 25 C 1.53036 * 109.45925 * 275.06491 * 10 9 7 26 26 H 0.97006 * 119.99658 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00597 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.45673 * 35.02575 * 10 9 7 29 29 H 1.09007 * 109.49254 * 61.43758 * 11 10 9 30 30 H 1.09000 * 109.52892 * 301.35666 * 11 10 9 31 31 H 1.08995 * 109.58928 * 185.58357 * 12 11 10 32 32 H 1.09004 * 109.69821 * 65.22333 * 12 11 10 33 33 H 1.08997 * 109.47457 * 60.00496 * 16 14 13 34 34 H 1.08997 * 109.47434 * 299.99896 * 16 14 13 35 35 H 1.08994 * 109.46931 * 60.00409 * 17 16 14 36 36 H 1.08994 * 109.47144 * 299.99699 * 17 16 14 37 37 H 1.08005 * 120.00186 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.99718 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.00403 * 179.72028 * 22 21 20 40 40 H 1.09003 * 109.58629 * 65.92484 * 24 13 12 41 41 H 1.08995 * 109.58472 * 186.34951 * 24 13 12 42 42 H 1.09004 * 109.49773 * 298.56650 * 25 10 9 43 43 H 1.09004 * 109.49752 * 58.63319 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.1803 -4.7522 0.6105 12 6 1.9617 -6.0695 0.6406 13 7 2.4411 -6.3660 -0.7163 14 6 2.1731 -7.5532 -1.2951 15 8 1.5303 -8.3888 -0.6956 16 6 2.6723 -7.8425 -2.6872 17 6 2.2336 -9.2477 -3.1045 18 6 2.7323 -9.5368 -4.4970 19 6 3.5008 -10.6623 -4.7370 20 7 3.9376 -10.9160 -5.9579 21 6 3.6400 -10.0951 -6.9500 22 6 2.8759 -8.9674 -6.7091 23 7 2.4353 -8.7159 -5.4888 24 6 3.2235 -5.3460 -1.4277 25 6 2.4231 -4.0347 -1.4368 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3881 0.0005 28 1 2.9683 -3.5505 0.5904 29 1 0.2812 -4.8763 0.0067 30 1 0.9007 -4.4718 1.6260 31 1 1.3095 -6.8735 0.9815 32 1 2.8119 -5.9770 1.3165 33 1 3.7605 -7.7816 -2.7030 34 1 2.2573 -7.1117 -3.3812 35 1 1.1455 -9.3082 -3.0889 36 1 2.6483 -9.9789 -2.4107 37 1 3.7437 -11.3334 -3.9263 38 1 3.9974 -10.3023 -7.9479 39 1 2.6365 -8.2942 -7.5190 40 1 4.1746 -5.1933 -0.9175 41 1 3.4041 -5.6725 -2.4518 42 1 1.5124 -4.1655 -2.0212 43 1 3.0283 -3.2430 -1.8785 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997154357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:35 Heat of formation + Delta-G solvation = -6.054959 kcal Electronic energy + Delta-G solvation = -24116.832758 eV Core-core repulsion = 20582.054934 eV Total energy + Delta-G solvation = -3534.777824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04817 -41.16098 -38.78185 -36.14372 -35.90806 -34.50552 -33.82098 -32.34436 -31.27628 -30.79544 -27.26570 -26.21401 -25.42967 -24.40337 -24.08786 -22.91090 -21.50597 -19.96523 -19.05750 -18.54113 -18.36057 -17.76100 -16.96247 -16.74038 -16.68698 -16.41128 -15.76450 -15.46985 -15.38989 -15.06169 -14.94728 -14.65157 -14.26887 -14.17032 -13.64119 -13.50514 -13.19253 -13.11772 -12.93497 -12.83066 -12.62071 -12.54920 -12.33487 -12.17838 -12.12491 -11.99930 -11.99328 -11.69250 -11.29949 -10.96937 -10.76116 -10.14904 -9.99060 -9.65150 -9.00434 -7.92882 -5.21618 -0.16114 0.17742 1.48451 1.49727 1.58014 1.62463 2.02911 2.57231 2.75367 3.09055 3.39548 3.40420 3.47597 3.59922 3.82142 3.89342 3.94361 4.07736 4.12315 4.12995 4.20550 4.35329 4.40925 4.43968 4.48956 4.60612 4.64979 4.65532 4.81267 4.85093 4.87197 4.98699 5.02958 5.08108 5.09394 5.32494 5.47309 5.50327 5.55018 5.64099 6.28790 6.34500 6.44199 6.85036 7.16070 7.34680 8.10824 8.33575 9.30924 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.002654 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.222917 B =10546.984313 C =11471.617335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.173 3.827 11 C -0.128 4.128 12 C 0.122 3.878 13 N -0.609 5.609 14 C 0.514 3.486 15 O -0.583 6.583 16 C -0.122 4.122 17 C -0.044 4.044 18 C 0.075 3.925 19 C 0.048 3.952 20 N -0.461 5.461 21 C 0.042 3.958 22 C 0.052 3.948 23 N -0.462 5.462 24 C 0.116 3.884 25 C -0.141 4.141 26 H 0.249 0.751 27 H 0.369 0.631 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.188 0.812 38 H 0.200 0.800 39 H 0.197 0.803 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.044 0.956 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 -21.279 -11.298 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.098 0.902 9 N -0.378 5.378 10 C 0.065 3.935 11 C -0.167 4.167 12 C -0.001 4.001 13 N -0.341 5.341 14 C 0.304 3.696 15 O -0.464 6.464 16 C -0.162 4.162 17 C -0.083 4.083 18 C -0.064 4.064 19 C -0.111 4.111 20 N -0.176 5.176 21 C -0.118 4.118 22 C -0.108 4.108 23 N -0.178 5.178 24 C -0.007 4.007 25 C -0.182 4.182 26 H 0.058 0.942 27 H 0.201 0.799 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.205 0.795 38 H 0.216 0.784 39 H 0.214 0.786 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.062 0.938 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.298 -21.594 -10.953 26.312 hybrid contribution -0.544 1.424 0.011 1.524 sum 9.754 -20.171 -10.941 24.934 Atomic orbital electron populations 1.69828 1.06738 1.25903 1.59934 1.25568 0.96309 1.01150 1.04149 0.85165 0.77764 0.79641 0.77360 1.21505 1.22656 1.19187 1.19636 0.91501 0.85042 1.40365 0.90221 1.42687 1.05382 1.01128 1.88646 1.20427 0.94290 0.84599 0.94226 1.22059 0.98540 0.94768 1.01339 1.21499 0.99023 0.96168 0.83368 1.48264 1.53774 1.15304 1.16762 1.21084 0.78856 0.80851 0.88827 1.90658 1.42146 1.47189 1.66387 1.21555 1.03759 0.98695 0.92173 1.20181 1.01883 0.96879 0.89393 1.22293 0.95404 0.92545 0.96195 1.23946 0.94672 0.96655 0.95811 1.68512 1.18671 1.29685 1.00711 1.24306 0.95568 0.91471 1.00423 1.24313 0.94077 0.97449 0.94977 1.68276 1.18873 1.29719 1.00896 1.21979 0.93975 0.86329 0.98396 1.22530 0.99791 0.96747 0.99160 0.94203 0.79933 0.93168 0.93407 0.91074 0.89803 0.89750 0.86849 0.87872 0.90356 0.87974 0.79483 0.78359 0.78609 0.89394 0.87644 0.93759 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 2 C -0.08 -4.53 5.50 84.87 0.47 -4.06 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.23 -12.58 9.93 84.04 0.83 -11.74 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -36.43 5.12 -322.81 -1.65 -38.08 16 10 C 0.17 6.40 2.73 45.02 0.12 6.52 16 11 C -0.13 -4.17 5.55 30.67 0.17 -4.00 16 12 C 0.12 3.28 6.43 86.36 0.56 3.84 16 13 N -0.61 -15.20 2.97 -818.07 -2.43 -17.63 16 14 C 0.51 12.92 7.70 87.66 0.67 13.60 16 15 O -0.58 -18.43 15.39 -3.03 -0.05 -18.47 16 16 C -0.12 -2.21 3.91 29.85 0.12 -2.09 16 17 C -0.04 -0.77 4.92 29.85 0.15 -0.63 16 18 C 0.08 1.28 6.18 42.55 0.26 1.54 16 19 C 0.05 0.73 10.85 84.68 0.92 1.65 16 20 N -0.46 -7.59 10.50 -195.22 -2.05 -9.64 16 21 C 0.04 0.50 11.22 84.67 0.95 1.45 16 22 C 0.05 0.67 11.22 84.67 0.95 1.62 16 23 N -0.46 -8.47 10.06 -183.29 -1.84 -10.31 16 24 C 0.12 2.57 6.37 86.51 0.55 3.12 16 25 C -0.14 -4.46 5.67 30.82 0.17 -4.29 16 26 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 27 H 0.37 20.04 7.80 -92.71 -0.72 19.32 16 28 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 29 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.08 2.37 7.00 -2.39 -0.02 2.35 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 1.56 7.93 -2.39 -0.02 1.54 16 34 H 0.10 1.96 7.52 -2.39 -0.02 1.94 16 35 H 0.08 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.10 1.53 7.85 -2.39 -0.02 1.51 16 37 H 0.19 1.89 7.96 -2.91 -0.02 1.87 16 38 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.20 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 1.81 5.93 -2.39 -0.01 1.80 16 42 H 0.04 1.53 8.14 -2.38 -0.02 1.52 16 43 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -72.69 355.42 1.48 -71.21 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.29 Total: 28.22 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.90 Total: 6.52 kcal Atomic # 7 Polarization: -127.28 SS G_CDS: -7.69 Total: -134.97 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.69 1.48 -71.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997154357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.159 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds