Wall clock time and date at job start Fri Apr 10 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48505 * 109.47233 * 269.99925 * 3 2 1 5 5 H 1.48507 * 109.47013 * 29.99736 * 3 2 1 6 6 H 1.48501 * 109.46998 * 149.99942 * 3 2 1 7 7 C 1.38809 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99688 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00009 * 180.02562 * 7 2 1 10 10 C 1.46493 * 119.99828 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.50151 * 325.06392 * 10 9 7 12 12 C 1.53038 * 109.49751 * 205.00050 * 10 9 7 13 13 C 1.53043 * 109.54270 * 178.65059 * 12 10 9 14 14 C 1.53196 * 109.33654 * 61.34729 * 13 12 10 15 15 N 1.46936 * 108.77058 * 305.41494 * 14 13 12 16 16 C 1.34774 * 120.60688 * 233.57853 * 15 14 13 17 17 O 1.21624 * 120.00239 * 172.75227 * 16 15 14 18 18 C 1.47331 * 119.99833 * 352.75453 * 16 15 14 19 19 C 1.36299 * 126.22616 * 172.69261 * 18 16 15 20 20 N 1.35756 * 106.91346 * 179.90628 * 19 18 16 21 21 C 1.35675 * 107.69717 * 0.12363 * 20 19 18 22 22 N 1.30601 * 108.91182 * 359.61466 * 21 20 19 23 23 C 1.51602 * 109.82446 * 179.79731 * 21 20 19 24 24 C 1.54503 * 104.27819 * 343.37063 * 23 21 20 25 25 C 1.47073 * 141.30248 * 180.22720 * 20 19 18 26 26 C 1.46928 * 118.76556 * 53.55564 * 15 14 13 27 27 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99759 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46457 * 58.62421 * 12 10 9 30 30 H 1.09008 * 109.45834 * 298.66861 * 12 10 9 31 31 H 1.08997 * 109.49975 * 181.31099 * 13 12 10 32 32 H 1.09006 * 109.49556 * 301.38413 * 13 12 10 33 33 H 1.08994 * 109.58651 * 65.17063 * 14 13 12 34 34 H 1.08998 * 109.58462 * 185.59797 * 14 13 12 35 35 H 1.07991 * 126.54411 * 359.90079 * 19 18 16 36 36 H 1.08995 * 110.47360 * 224.66771 * 23 21 20 37 37 H 1.09003 * 110.57665 * 102.11917 * 23 21 20 38 38 H 1.09001 * 110.94161 * 267.20148 * 24 23 21 39 39 H 1.09001 * 110.94449 * 143.50047 * 24 23 21 40 40 H 1.08997 * 110.22928 * 316.10908 * 25 20 19 41 41 H 1.09005 * 110.22230 * 77.96858 * 25 20 19 42 42 H 1.09000 * 109.58607 * 186.62049 * 26 15 14 43 43 H 1.09002 * 109.69694 * 66.27219 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5643 -3.2072 0.5891 12 6 5.4995 -2.2596 0.6113 13 6 6.2532 -3.5912 0.6427 14 6 6.4281 -4.1088 -0.7885 15 7 5.1087 -4.1764 -1.4315 16 6 4.6823 -5.3192 -2.0046 17 8 3.5410 -5.4042 -2.4163 18 6 5.5987 -6.4657 -2.1324 19 6 5.2681 -7.7176 -2.5582 20 7 6.4050 -8.4588 -2.5259 21 6 7.4067 -7.6585 -2.0821 22 7 6.9258 -6.4660 -1.8533 23 6 8.7030 -8.4423 -2.0224 24 6 8.2575 -9.9205 -2.0823 25 6 6.8998 -9.8146 -2.8089 26 6 4.2628 -2.9750 -1.4376 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3620 0.0007 29 1 5.3953 -1.8773 1.6268 30 1 6.0559 -1.5416 0.0086 31 1 7.2322 -3.4445 1.0987 32 1 5.6854 -4.3169 1.2252 33 1 7.0718 -3.4291 -1.3468 34 1 6.8752 -5.1026 -0.7655 35 1 4.2888 -8.0554 -2.8630 36 1 9.2282 -8.2400 -1.0890 37 1 9.3366 -8.2003 -2.8756 38 1 8.1321 -10.3306 -1.0802 39 1 8.9633 -10.5170 -2.6604 40 1 6.2048 -10.5584 -2.4193 41 1 7.0337 -9.9504 -3.8822 42 1 3.2815 -3.2211 -1.8433 43 1 4.7275 -2.2016 -2.0491 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999191581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:48 Heat of formation + Delta-G solvation = 37.758575 kcal Electronic energy + Delta-G solvation = -24954.057148 eV Core-core repulsion = 21421.179222 eV Total energy + Delta-G solvation = -3532.877926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.58210 -40.97500 -38.73634 -37.18447 -36.27623 -34.01752 -33.03754 -32.90607 -30.83762 -29.69552 -28.16825 -26.72263 -25.65290 -23.97909 -23.12881 -22.41075 -21.69003 -21.12448 -20.09699 -19.52545 -18.12825 -17.66800 -17.18879 -16.90910 -16.66752 -16.34492 -15.75645 -15.48354 -15.17061 -14.94188 -14.80066 -14.78280 -14.26178 -14.12287 -13.96755 -13.93238 -13.85134 -13.36908 -13.23750 -12.96686 -12.59087 -12.44886 -12.15802 -12.05868 -11.92207 -11.88405 -11.83563 -11.39765 -11.34999 -11.11758 -10.79950 -10.40354 -9.88033 -9.53016 -9.21945 -8.04919 -5.41387 0.49221 1.30791 1.36334 1.41939 1.49092 1.57651 2.11010 2.40855 2.46985 2.76146 3.25270 3.44239 3.52937 3.58111 3.84724 3.98554 3.99298 4.10205 4.18175 4.23070 4.33759 4.34847 4.42212 4.48193 4.61299 4.69576 4.72140 4.85674 4.92773 4.93387 5.04390 5.06728 5.11149 5.12644 5.19813 5.31961 5.42539 5.46623 5.70664 5.75969 5.95802 6.18720 6.44706 6.79961 7.03227 7.16553 7.75550 7.99431 9.16992 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032514 B = 0.003117 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.959331 B = 8980.185292 C = 9584.810642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.239 4.239 8 H 0.044 0.956 9 N -0.742 5.742 10 C 0.172 3.828 11 H 0.028 0.972 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.082 3.918 15 N -0.593 5.593 16 C 0.587 3.413 17 O -0.595 6.595 18 C -0.078 4.078 19 C 0.054 3.946 20 N -0.476 5.476 21 C 0.189 3.811 22 N -0.473 5.473 23 C -0.040 4.040 24 C -0.115 4.115 25 C 0.088 3.912 26 C 0.104 3.896 27 H 0.259 0.741 28 H 0.371 0.629 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.191 0.809 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.046 0.954 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.988 -23.843 -4.081 36.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.369 4.369 8 H 0.062 0.938 9 N -0.386 5.386 10 C 0.063 3.937 11 H 0.046 0.954 12 C -0.158 4.158 13 C -0.158 4.158 14 C -0.039 4.039 15 N -0.323 5.323 16 C 0.377 3.623 17 O -0.477 6.477 18 C -0.206 4.206 19 C -0.086 4.086 20 N -0.157 5.157 21 C -0.076 4.076 22 N -0.194 5.194 23 C -0.079 4.079 24 C -0.153 4.153 25 C -0.031 4.031 26 C -0.021 4.021 27 H 0.068 0.932 28 H 0.205 0.795 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.162 0.838 35 H 0.208 0.792 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 27.494 -23.457 -4.072 36.370 hybrid contribution -1.583 0.857 -0.476 1.862 sum 25.911 -22.600 -4.548 34.682 Atomic orbital electron populations 1.69919 1.07407 1.26914 1.59260 1.25626 0.96239 1.01687 1.02053 0.85282 0.78800 0.78676 0.78226 1.20354 1.21926 1.16840 1.18967 0.82653 0.93223 1.42101 0.93832 1.42631 1.02383 1.03579 1.89993 1.20578 0.93087 0.87064 0.92970 0.95374 1.21803 0.93726 0.98886 1.01381 1.21871 1.01721 0.95547 0.96628 1.22814 0.81930 1.07019 0.92143 1.48056 1.19341 1.09919 1.55023 1.17521 0.85407 0.82179 0.77202 1.90766 1.20581 1.83256 1.53053 1.20176 0.91729 0.94208 1.14450 1.22272 0.92332 0.90520 1.03487 1.46671 1.07534 1.14025 1.47507 1.25724 0.94384 0.87220 1.00263 1.69835 1.06884 1.20407 1.22258 1.21024 0.88561 0.91572 1.06724 1.22830 0.94060 0.95199 1.03178 1.22999 0.98028 0.78341 1.03711 1.22228 0.94175 0.85840 0.99889 0.93182 0.79496 0.91129 0.90542 0.87168 0.92942 0.91122 0.83782 0.79233 0.86809 0.86554 0.88575 0.84415 0.87454 0.87108 0.93481 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.66 13.97 21.65 0.30 -66.36 16 2 C -0.06 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.96 47.28 27.74 68.60 1.90 49.18 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.24 -10.59 6.52 99.48 0.65 -9.94 16 7 C -0.24 -14.76 10.41 84.03 0.88 -13.89 16 8 H 0.04 3.04 8.06 -2.91 -0.02 3.02 16 9 N -0.74 -37.45 4.93 -322.59 -1.59 -39.04 16 10 C 0.17 7.47 2.92 45.07 0.13 7.60 16 11 H 0.03 1.38 8.08 -2.38 -0.02 1.36 16 12 C -0.12 -3.81 5.35 30.62 0.16 -3.65 16 13 C -0.12 -3.12 6.08 30.67 0.19 -2.93 16 14 C 0.08 2.34 6.09 86.36 0.53 2.87 16 15 N -0.59 -22.30 2.97 -822.86 -2.45 -24.75 16 16 C 0.59 23.57 7.67 86.64 0.66 24.23 16 17 O -0.59 -28.71 16.31 -4.11 -0.07 -28.78 16 18 C -0.08 -2.44 6.64 40.50 0.27 -2.18 16 19 C 0.05 1.34 11.76 83.63 0.98 2.32 16 20 N -0.48 -7.76 3.55 -508.30 -1.80 -9.56 16 21 C 0.19 3.30 8.58 138.18 1.18 4.49 16 22 N -0.47 -12.27 7.80 -175.92 -1.37 -13.65 16 23 C -0.04 -0.19 6.85 30.65 0.21 0.02 16 24 C -0.11 0.10 7.16 31.57 0.23 0.32 16 25 C 0.09 0.39 7.77 86.73 0.67 1.06 16 26 C 0.10 4.52 6.03 86.36 0.52 5.04 16 27 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 28 H 0.37 17.31 5.66 -92.71 -0.52 16.79 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.15 3.96 4.14 -17.98 -0.07 3.89 16 35 H 0.19 4.33 8.06 -2.92 -0.02 4.31 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.14 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.11 0.15 8.14 -2.38 -0.02 0.14 16 42 H 0.05 2.46 7.00 -2.39 -0.02 2.44 16 43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -89.93 343.82 2.39 -87.55 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.38 Total: 23.68 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 7.08 Total: 21.73 kcal Atomic # 7 Polarization: -146.45 SS G_CDS: -6.91 Total: -153.36 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.07 Total: -28.78 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.90 Total: 49.18 kcal Total: -89.93 2.39 -87.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999191581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.305 kcal (2) G-P(sol) polarization free energy of solvation -89.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds