Wall clock time and date at job start Fri Apr 10 2020 17:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38547 * 120.01312 * 2 1 4 4 C 1.40079 * 117.81651 * 179.97438 * 3 2 1 5 5 C 1.48130 * 121.14272 * 179.97438 * 4 3 2 6 6 O 1.21524 * 119.99921 * 234.35839 * 5 4 3 7 7 N 1.34780 * 120.00423 * 54.35699 * 5 4 3 8 8 C 1.46926 * 120.62914 * 355.90792 * 7 5 4 9 9 C 1.53189 * 108.77802 * 126.41070 * 8 7 5 10 10 C 1.53042 * 109.31046 * 54.63266 * 9 8 7 11 11 C 1.53034 * 109.53895 * 298.63566 * 10 9 8 12 12 H 1.08997 * 109.50109 * 301.38021 * 11 10 9 13 13 N 1.46502 * 109.49906 * 181.31889 * 11 10 9 14 14 C 1.36928 * 120.00421 * 155.00280 * 13 11 10 15 15 H 1.07999 * 119.99913 * 359.97438 * 14 13 11 16 16 C 1.38817 * 120.00128 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00015 * 359.72417 * 16 14 13 18 18 Si 1.86806 * 119.99926 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46948 * 90.00164 * 18 16 14 20 20 H 1.48499 * 109.46998 * 210.00194 * 18 16 14 21 21 H 1.48499 * 109.47180 * 329.99880 * 18 16 14 22 22 C 1.46920 * 120.63196 * 175.92806 * 7 5 4 23 23 C 1.39764 * 117.70767 * 0.24979 * 4 3 2 24 24 C 1.50694 * 120.17388 * 179.72656 * 23 4 3 25 25 N 1.31901 * 119.65335 * 359.48800 * 23 4 3 26 26 N 1.28276 * 122.33100 * 0.53491 * 25 23 4 27 27 H 1.08999 * 109.46832 * 90.00509 * 1 2 3 28 28 H 1.09000 * 109.46937 * 210.00002 * 1 2 3 29 29 H 1.08999 * 109.47436 * 329.99949 * 1 2 3 30 30 H 1.08003 * 121.09102 * 359.95453 * 3 2 1 31 31 H 1.09000 * 109.58380 * 6.62428 * 8 7 5 32 32 H 1.08997 * 109.70165 * 246.26996 * 8 7 5 33 33 H 1.09000 * 109.49592 * 294.68375 * 9 8 7 34 34 H 1.08997 * 109.49956 * 174.58856 * 9 8 7 35 35 H 1.09005 * 109.45815 * 178.61719 * 10 9 8 36 36 H 1.09004 * 109.44418 * 58.65225 * 10 9 8 37 37 H 0.97004 * 119.99672 * 334.99857 * 13 11 10 38 38 H 0.96998 * 120.00348 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.58711 * 113.80109 * 22 7 5 40 40 H 1.09006 * 109.59071 * 353.37331 * 22 7 5 41 41 H 1.09001 * 109.47289 * 94.33117 * 24 23 4 42 42 H 1.08997 * 109.47115 * 214.33505 * 24 23 4 43 43 H 1.09010 * 109.46963 * 334.33345 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 0.0006 5 6 4.4139 2.3835 0.0000 6 8 5.2605 2.5535 -0.8551 7 7 4.2158 3.3210 0.9478 8 6 3.1371 3.1720 1.9342 9 6 3.7325 3.3031 3.3396 10 6 4.5006 4.6228 3.4427 11 6 5.6477 4.6278 2.4298 12 1 6.3093 3.7839 2.6251 13 7 6.4015 5.8782 2.5509 14 6 7.7130 5.9276 2.1605 15 1 8.1919 5.0446 1.7638 16 6 8.4271 7.1125 2.2748 17 7 7.8419 8.1900 2.7532 18 14 10.2166 7.1796 1.7429 19 1 10.2930 7.5617 0.3100 20 1 10.9392 8.1852 2.5626 21 1 10.8400 5.8454 1.9335 22 6 5.0740 4.5117 1.0141 23 6 4.2018 -0.1154 -0.0043 24 6 5.7037 -0.2378 -0.0102 25 7 3.4483 -1.1980 0.0010 26 7 2.1668 -1.1420 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6782 2.1453 -0.0007 31 1 2.6739 2.1915 1.8237 32 1 2.3886 3.9492 1.7805 33 1 4.4117 2.4713 3.5260 34 1 2.9301 3.2905 4.0773 35 1 4.9046 4.7301 4.4494 36 1 3.8260 5.4527 3.2317 37 1 5.9714 6.6712 2.9075 38 1 8.3409 9.0179 2.8334 39 1 4.4852 5.3998 0.7844 40 1 5.8888 4.4153 0.2964 41 1 6.0634 -0.3469 1.0129 42 1 5.9947 -1.1119 -0.5927 43 1 6.1395 0.6568 -0.4552 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999258152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:05 Heat of formation + Delta-G solvation = 9.903057 kcal Electronic energy + Delta-G solvation = -25234.787958 eV Core-core repulsion = 21700.702126 eV Total energy + Delta-G solvation = -3534.085832 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60366 -41.00126 -38.84117 -36.37019 -35.57165 -34.86311 -33.79144 -32.80632 -31.07785 -29.89974 -27.94685 -27.22155 -25.92954 -25.26416 -23.90530 -23.29313 -21.84154 -20.44169 -19.16758 -18.90902 -18.45764 -17.34015 -16.93026 -16.85522 -16.38848 -16.06854 -15.70341 -15.48921 -15.34891 -15.18053 -14.69801 -14.43282 -14.38728 -14.08714 -14.00860 -13.72487 -13.44895 -13.33735 -13.13352 -13.08187 -12.92202 -12.55926 -12.24119 -12.12950 -12.11117 -11.94862 -11.75871 -11.63165 -11.39682 -11.12270 -11.09830 -10.62690 -10.55446 -9.87934 -9.04609 -7.99537 -5.28593 -0.69545 -0.28609 1.29372 1.44890 1.46286 1.54035 1.72074 2.30523 2.52640 2.82052 3.02864 3.21273 3.34146 3.39926 3.66557 3.72104 3.96024 3.98064 4.01774 4.11400 4.22587 4.27951 4.34673 4.37384 4.51657 4.52760 4.66438 4.73477 4.78063 4.81204 4.81603 4.84957 4.97534 5.06905 5.07753 5.10916 5.31970 5.32904 5.39012 5.42112 5.51652 6.19865 6.23189 6.84629 7.30460 7.53616 8.02071 8.26985 9.22958 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.003588 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.533277 B = 7801.233739 C = 8525.128910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.067 3.933 3 C -0.070 4.070 4 C -0.126 4.126 5 C 0.560 3.440 6 O -0.566 6.566 7 N -0.588 5.588 8 C 0.093 3.907 9 C -0.122 4.122 10 C -0.118 4.118 11 C 0.167 3.833 12 H 0.032 0.968 13 N -0.728 5.728 14 C -0.245 4.245 15 H 0.067 0.933 16 C -0.065 4.065 17 N -0.963 5.963 18 Si 0.965 3.035 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.273 1.273 22 C 0.107 3.893 23 C 0.097 3.903 24 C -0.115 4.115 25 N -0.261 5.261 26 N -0.256 5.256 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.192 0.808 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.378 0.622 38 H 0.253 0.747 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.176 -14.872 -1.239 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.079 4.079 3 C -0.099 4.099 4 C -0.140 4.140 5 C 0.347 3.653 6 O -0.445 6.445 7 N -0.319 5.319 8 C -0.028 4.028 9 C -0.160 4.160 10 C -0.156 4.156 11 C 0.057 3.943 12 H 0.050 0.950 13 N -0.368 5.368 14 C -0.377 4.377 15 H 0.085 0.915 16 C -0.258 4.258 17 N -0.613 5.613 18 Si 0.794 3.206 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.198 1.198 22 C -0.018 4.018 23 C -0.048 4.048 24 C -0.173 4.173 25 N -0.102 5.102 26 N -0.098 5.098 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.209 0.791 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.211 0.789 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.612 -16.481 -1.708 24.919 hybrid contribution 1.595 2.219 -0.349 2.755 sum -17.017 -14.262 -2.056 22.298 Atomic orbital electron populations 1.20892 0.83655 1.05987 1.05121 1.23483 1.01122 0.88839 0.94407 1.22907 0.91545 1.02177 0.93282 1.20963 0.95893 0.94191 1.02956 1.18296 0.82681 0.82747 0.81579 1.90791 1.36138 1.78906 1.38684 1.48223 1.33092 1.20698 1.29888 1.22346 0.88774 1.04379 0.87276 1.21868 1.00759 0.96509 0.96905 1.21740 0.96445 0.98830 0.98609 1.20653 0.92548 0.88501 0.92623 0.94977 1.42495 1.09290 1.09213 1.75792 1.19513 0.88699 0.95641 1.33874 0.91524 1.25447 1.02100 0.95697 1.02589 1.69775 1.37400 1.01079 1.52997 0.85271 0.80618 0.77324 0.77366 1.21609 1.21735 1.19819 1.22380 0.93396 0.85710 1.00287 1.23053 0.99693 0.88833 0.93216 1.20896 0.86832 1.04974 1.04598 1.72991 0.99756 1.26504 1.10935 1.72736 1.01412 1.26682 1.08930 0.88420 0.89446 0.86925 0.79112 0.88154 0.87763 0.92424 0.86930 0.92019 0.90869 0.78887 0.93825 0.91262 0.92690 0.88746 0.88578 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.19 71.24 0.73 0.06 16 2 C 0.07 1.07 6.86 42.63 0.29 1.36 16 3 C -0.07 -1.11 7.33 22.79 0.17 -0.94 16 4 C -0.13 -3.00 4.90 -19.83 -0.10 -3.10 16 5 C 0.56 16.67 6.67 86.87 0.58 17.25 16 6 O -0.57 -21.87 14.62 -3.79 -0.06 -21.93 16 7 N -0.59 -15.82 2.97 -821.98 -2.44 -18.26 16 8 C 0.09 1.58 5.63 86.36 0.49 2.07 16 9 C -0.12 -2.27 6.08 30.67 0.19 -2.09 16 10 C -0.12 -3.22 5.35 30.62 0.16 -3.06 16 11 C 0.17 6.25 2.92 45.07 0.13 6.38 16 12 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 13 N -0.73 -35.40 5.12 -322.58 -1.65 -37.05 16 14 C -0.25 -13.59 9.93 84.04 0.83 -12.76 16 15 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 16 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 17 N -0.96 -57.60 13.06 21.65 0.28 -57.32 16 18 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.11 3.80 6.01 86.36 0.52 4.32 16 23 C 0.10 2.54 6.91 42.92 0.30 2.83 16 24 C -0.11 -2.86 9.92 71.23 0.71 -2.15 16 25 N -0.26 -7.01 11.42 -46.94 -0.54 -7.55 16 26 N -0.26 -6.02 11.40 -47.68 -0.54 -6.56 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 0.11 8.09 -2.39 -0.02 0.09 16 30 H 0.19 1.62 7.49 -2.91 -0.02 1.59 16 31 H 0.10 1.31 4.75 -2.39 -0.01 1.30 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.38 19.35 7.80 -92.71 -0.72 18.63 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.05 2.38 7.03 -2.38 -0.02 2.36 16 41 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.08 2.31 5.69 -2.38 -0.01 2.29 16 Total: -1.00 -74.20 350.16 2.85 -71.35 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.31 Total: 21.96 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.46 Total: 6.91 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -4.89 Total: -126.74 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.06 Total: -21.93 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.20 2.85 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999258152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.254 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds