Wall clock time and date at job start Fri Apr 10 2020 17:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47169 * 300.00697 * 3 2 1 6 6 H 1.48504 * 109.46694 * 60.00334 * 3 2 1 7 7 C 1.38815 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99659 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00304 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.49542 * 324.99832 * 10 9 7 12 12 C 1.53042 * 109.52844 * 204.91618 * 10 9 7 13 13 C 1.53036 * 109.53792 * 178.66379 * 12 10 9 14 14 C 1.53191 * 109.31448 * 61.36757 * 13 12 10 15 15 N 1.46925 * 108.77364 * 305.36225 * 14 13 12 16 16 C 1.34774 * 120.63306 * 233.58566 * 15 14 13 17 17 O 1.21684 * 120.00201 * 175.71008 * 16 15 14 18 18 C 1.46767 * 119.99852 * 355.71363 * 16 15 14 19 19 C 1.36549 * 126.84046 * 235.42172 * 18 16 15 20 20 N 1.33178 * 107.79519 * 179.97438 * 19 18 16 21 21 C 1.31366 * 109.76763 * 0.41666 * 20 19 18 22 22 N 1.34265 * 108.97771 * 359.65495 * 21 20 19 23 23 C 1.46999 * 111.32687 * 180.21676 * 22 21 20 24 24 C 1.54399 * 105.48665 * 342.91081 * 23 22 21 25 25 C 1.51648 * 141.06426 * 179.57035 * 21 20 19 26 26 C 1.46924 * 118.74105 * 53.60908 * 15 14 13 27 27 H 0.97005 * 120.00459 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99937 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.45720 * 298.68642 * 12 10 9 30 30 H 1.09003 * 109.45567 * 58.64234 * 12 10 9 31 31 H 1.09003 * 109.49731 * 301.41314 * 13 12 10 32 32 H 1.08998 * 109.52239 * 181.33245 * 13 12 10 33 33 H 1.08998 * 109.58981 * 185.57309 * 14 13 12 34 34 H 1.08997 * 109.58614 * 65.14941 * 14 13 12 35 35 H 1.08000 * 126.10493 * 0.08473 * 19 18 16 36 36 H 1.08995 * 110.24839 * 101.92695 * 23 22 21 37 37 H 1.09007 * 110.24014 * 223.91623 * 23 22 21 38 38 H 1.09000 * 110.98683 * 267.54776 * 24 23 22 39 39 H 1.08995 * 111.01273 * 143.76092 * 24 23 22 40 40 H 1.09004 * 110.47857 * 315.31048 * 25 21 20 41 41 H 1.09000 * 110.48017 * 77.80107 * 25 21 20 42 42 H 1.08999 * 109.58856 * 186.60526 * 26 15 14 43 43 H 1.09002 * 109.58958 * 66.17515 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 2.9689 -3.5510 -0.5900 12 6 1.1809 -4.7538 -0.6082 13 6 1.9578 -6.0720 -0.6389 14 6 2.3200 -6.4800 0.7926 15 7 3.0393 -5.3704 1.4329 16 6 4.2429 -5.5716 2.0051 17 8 4.8638 -4.6306 2.4630 18 6 4.8047 -6.9256 2.0758 19 6 5.2212 -7.5816 3.1986 20 7 5.6616 -8.7828 2.8285 21 6 5.5520 -8.9142 1.5260 22 7 5.0244 -7.7896 1.0165 23 6 4.8738 -7.8830 -0.4427 24 6 5.7764 -9.0585 -0.8759 25 6 5.8237 -9.9086 0.4138 26 6 2.4215 -4.0374 1.4382 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 0.2819 -4.8761 -0.0042 30 1 0.9006 -4.4737 -1.6237 31 1 2.8695 -5.9434 -1.2223 32 1 1.3414 -6.8476 -1.0933 33 1 2.9571 -7.3641 0.7704 34 1 1.4101 -6.6968 1.3520 35 1 5.1961 -7.1961 4.2071 36 1 3.8355 -8.0890 -0.7024 37 1 5.2054 -6.9587 -0.9160 38 1 6.7715 -8.7068 -1.1483 39 1 5.3241 -9.6172 -1.6952 40 1 6.8084 -10.3594 0.5374 41 1 5.0525 -10.6786 0.3939 42 1 3.1256 -3.3099 1.8419 43 1 1.5197 -4.0550 2.0503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999400888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:18 Heat of formation + Delta-G solvation = 57.451392 kcal Electronic energy + Delta-G solvation = -25550.442848 eV Core-core repulsion = 22018.418866 eV Total energy + Delta-G solvation = -3532.023982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.79147 -39.72055 -37.48207 -36.57905 -34.57981 -32.58049 -32.05373 -31.23907 -29.26152 -28.25901 -27.84358 -25.27448 -24.09272 -22.63426 -22.38922 -21.98973 -20.47301 -20.02227 -18.96372 -17.78589 -17.15015 -16.67532 -16.15861 -15.35329 -15.13344 -14.65334 -14.51264 -14.30953 -14.18289 -14.14807 -13.70459 -13.67619 -13.46487 -13.32201 -12.77794 -12.60765 -12.48107 -12.35221 -12.05856 -11.58460 -11.44814 -11.14618 -10.90877 -10.75841 -10.67163 -10.33555 -10.22962 -9.93378 -9.89711 -9.83538 -9.68542 -9.13943 -8.59858 -8.39364 -7.05757 -5.83327 -3.13608 1.43977 2.15068 2.77234 2.96718 3.20173 3.41822 3.48540 3.49602 3.50853 3.97865 4.19955 4.26279 4.49823 4.53464 4.74614 4.87225 4.92359 4.95569 5.08948 5.13260 5.20498 5.26206 5.40300 5.42005 5.43289 5.45452 5.52826 5.67638 5.82305 5.90033 5.97965 6.04287 6.10093 6.23193 6.38642 6.47389 6.61995 6.71777 6.74192 6.91177 7.49056 7.68052 7.82750 8.21826 8.34594 9.46707 9.99414 10.34771 11.38817 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.003584 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.980169 B = 7811.344766 C = 8246.518395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.170 3.830 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.100 3.900 15 N -0.596 5.596 16 C 0.586 3.414 17 O -0.523 6.523 18 C -0.047 4.047 19 C 0.047 3.953 20 N -0.482 5.482 21 C 0.198 3.802 22 N -0.459 5.459 23 C 0.092 3.908 24 C -0.129 4.129 25 C -0.041 4.041 26 C 0.091 3.909 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.183 0.817 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.103 -23.201 -3.365 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.023 4.023 15 N -0.330 5.330 16 C 0.371 3.629 17 O -0.398 6.398 18 C -0.162 4.162 19 C -0.105 4.105 20 N -0.201 5.201 21 C -0.064 4.064 22 N -0.145 5.145 23 C -0.029 4.029 24 C -0.167 4.167 25 C -0.080 4.080 26 C -0.033 4.033 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.200 0.800 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.742 -22.884 -2.774 24.317 hybrid contribution -0.335 1.648 -0.379 1.724 sum 7.407 -21.237 -3.153 22.711 Atomic orbital electron populations 1.69668 1.05139 1.25744 1.57350 1.24750 0.95517 0.97788 1.02489 0.86119 0.78985 0.83921 0.77219 1.20403 1.21804 1.21696 1.19312 0.91141 0.83920 1.43180 0.90975 1.42373 1.05815 0.99528 1.88052 1.20469 0.94856 0.86528 0.92305 0.93224 1.21819 0.98735 0.93836 1.02004 1.21921 1.00818 0.98644 0.95513 1.21891 0.97201 0.89202 0.94000 1.48253 1.18431 1.11304 1.54976 1.17065 0.81120 0.85834 0.78850 1.90868 1.59809 1.41593 1.47515 1.20892 1.13960 0.93748 0.87626 1.22461 1.00270 0.89920 0.97857 1.69749 1.22102 1.19426 1.08824 1.24418 1.01283 0.89433 0.91271 1.46499 1.46300 1.13917 1.07764 1.22666 1.02307 1.01619 0.76321 1.22770 1.01113 0.95052 0.97768 1.20719 1.04741 0.94966 0.87597 1.22898 0.97942 0.81098 1.01365 0.93452 0.78014 0.91852 0.91206 0.91833 0.90839 0.90558 0.91211 0.79986 0.88369 0.88686 0.89187 0.87655 0.88213 0.88246 0.88861 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.72 -17.53 5.12 -53.31 -0.27 -17.80 16 10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 11 H 0.05 1.03 8.08 -51.92 -0.42 0.61 16 12 C -0.13 -1.87 5.36 -26.69 -0.14 -2.02 16 13 C -0.13 -1.43 5.58 -26.61 -0.15 -1.58 16 14 C 0.10 1.19 6.00 -3.71 -0.02 1.17 16 15 N -0.60 -9.40 2.97 -174.28 -0.52 -9.92 16 16 C 0.59 10.09 7.60 -12.81 -0.10 9.99 16 17 O -0.52 -11.10 16.52 5.20 0.09 -11.01 16 18 C -0.05 -0.69 5.76 -82.04 -0.47 -1.16 16 19 C 0.05 0.68 11.85 -17.58 -0.21 0.47 16 20 N -0.48 -6.70 11.21 -10.29 -0.12 -6.82 16 21 C 0.20 2.19 8.56 -154.93 -1.33 0.87 16 22 N -0.46 -5.18 2.69 -108.27 -0.29 -5.48 16 23 C 0.09 0.66 6.78 -3.04 -0.02 0.64 16 24 C -0.13 -0.53 7.18 -25.19 -0.18 -0.71 16 25 C -0.04 -0.24 6.86 -26.61 -0.18 -0.42 16 26 C 0.09 1.72 6.02 -3.71 -0.02 1.70 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.39 9.90 7.80 -40.82 -0.32 9.59 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.81 3.41 -51.93 -0.18 0.63 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.10 0.55 6.42 -51.93 -0.33 0.22 16 37 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 2.07 6.99 -51.93 -0.36 1.70 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -34.89 344.80 -9.71 -44.60 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.23 Total: 5.96 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -3.27 Total: 4.76 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.47 Total: -67.03 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.89 -9.71 -44.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999400888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.051 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds