Wall clock time and date at job start Fri Apr 10 2020 17:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48504 * 109.46713 * 240.26915 * 3 2 1 5 5 H 1.48502 * 109.47252 * 0.26847 * 3 2 1 6 6 H 1.48495 * 109.47285 * 120.27039 * 3 2 1 7 7 C 1.38810 * 119.99966 * 180.26524 * 2 1 3 8 8 H 1.08001 * 120.00079 * 179.73210 * 7 2 1 9 9 N 1.36936 * 119.99857 * 359.73043 * 7 2 1 10 10 C 1.46501 * 119.99706 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.49631 * 34.93955 * 10 9 7 12 12 C 1.53046 * 109.49627 * 155.00163 * 10 9 7 13 13 C 1.53042 * 109.53909 * 181.31965 * 12 10 9 14 14 C 1.53193 * 109.30858 * 298.63494 * 13 12 10 15 15 N 1.46921 * 108.77674 * 54.63815 * 14 13 12 16 16 C 1.34778 * 120.63529 * 126.41671 * 15 14 13 17 17 O 1.21676 * 120.00191 * 174.60115 * 16 15 14 18 18 C 1.46764 * 119.99340 * 354.59432 * 16 15 14 19 19 C 1.36552 * 126.84067 * 128.11313 * 18 16 15 20 20 N 1.33173 * 107.79796 * 179.84150 * 19 18 16 21 21 C 1.31364 * 109.76851 * 0.33815 * 20 19 18 22 22 N 1.34262 * 108.97913 * 359.88263 * 21 20 19 23 23 C 1.47002 * 111.33351 * 179.80148 * 22 21 20 24 24 C 1.54395 * 105.48520 * 17.06705 * 23 22 21 25 25 C 1.51654 * 141.06654 * 179.97438 * 21 20 19 26 26 C 1.46930 * 118.73938 * 306.38620 * 15 14 13 27 27 H 0.97004 * 119.99888 * 359.73721 * 1 2 3 28 28 H 0.96993 * 120.00431 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.45999 * 301.33521 * 12 10 9 30 30 H 1.08993 * 109.45913 * 61.30816 * 12 10 9 31 31 H 1.08997 * 109.49671 * 58.58568 * 13 12 10 32 32 H 1.09000 * 109.49914 * 178.68390 * 13 12 10 33 33 H 1.09008 * 109.58312 * 174.42143 * 14 13 12 34 34 H 1.09002 * 109.58885 * 294.84782 * 14 13 12 35 35 H 1.08002 * 126.09990 * 359.97438 * 19 18 16 36 36 H 1.08998 * 110.24727 * 136.07349 * 23 22 21 37 37 H 1.09002 * 110.24236 * 257.97978 * 23 22 21 38 38 H 1.09004 * 110.97938 * 92.46512 * 24 23 22 39 39 H 1.08994 * 110.98372 * 216.26364 * 24 23 22 40 40 H 1.09004 * 110.47536 * 44.67928 * 25 21 20 41 41 H 1.08996 * 110.47927 * 282.06006 * 25 21 20 42 42 H 1.08996 * 109.58561 * 293.82683 * 26 15 14 43 43 H 1.08996 * 109.59047 * 173.39980 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0989 1.6992 -1.2158 5 1 1.2852 2.7465 0.0066 6 1 3.1088 1.6936 1.2091 7 6 2.0102 -1.2021 -0.0056 8 1 3.0902 -1.2021 -0.0099 9 7 1.3255 -2.3880 -0.0055 10 6 2.0580 -3.6567 -0.0119 11 1 2.9720 -3.5520 0.5728 12 6 1.1838 -4.7544 0.5989 13 6 1.9601 -6.0731 0.6228 14 6 2.3138 -6.4787 -0.8115 15 7 3.0300 -5.3684 -1.4540 16 6 4.2301 -5.5692 -2.0336 17 8 4.7681 -4.6666 -2.6472 18 6 4.8881 -6.8765 -1.9245 19 6 5.3828 -7.6322 -2.9486 20 7 5.8995 -8.7415 -2.4233 21 6 5.7490 -8.7270 -1.1183 22 7 5.1256 -7.5921 -0.7633 23 6 4.9259 -7.5243 0.6915 24 6 5.8899 -8.5718 1.2892 25 6 6.0457 -9.5615 0.1127 26 6 2.4128 -4.0350 -1.4533 27 1 -0.4850 0.8401 0.0039 28 1 0.3556 -2.3881 -0.0011 29 1 0.9096 -4.4760 1.6165 30 1 0.2813 -4.8753 -0.0002 31 1 2.8752 -5.9460 1.2011 32 1 1.3455 -6.8489 1.0793 33 1 2.9507 -7.3632 -0.7945 34 1 1.4005 -6.6941 -1.3661 35 1 5.3610 -7.3750 -3.9973 36 1 5.1744 -6.5292 1.0604 37 1 3.8946 -7.7724 0.9426 38 1 6.8472 -8.1187 1.5474 39 1 5.4455 -9.0619 2.1554 40 1 7.0632 -9.9504 0.0736 41 1 5.3280 -10.3769 0.2027 42 1 1.5076 -4.0511 -2.0602 43 1 3.1149 -3.3071 -1.8599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999400891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:22 Heat of formation + Delta-G solvation = 55.997296 kcal Electronic energy + Delta-G solvation = -25621.114223 eV Core-core repulsion = 22089.027187 eV Total energy + Delta-G solvation = -3532.087036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.77606 -39.71638 -37.50058 -36.55611 -34.58123 -32.56629 -32.04767 -31.25310 -29.25407 -28.26615 -27.81438 -25.28664 -24.08258 -22.64693 -22.39211 -21.96533 -20.46366 -19.97974 -19.01599 -17.73078 -17.15647 -16.68149 -16.13027 -15.31941 -15.13042 -14.69396 -14.52726 -14.32112 -14.17419 -14.13140 -13.71597 -13.65271 -13.44154 -13.33764 -12.73631 -12.59704 -12.51988 -12.33338 -12.04710 -11.55903 -11.45782 -11.16267 -10.88980 -10.77242 -10.67802 -10.33411 -10.29233 -9.94039 -9.90438 -9.82451 -9.68530 -9.13425 -8.59487 -8.39333 -7.06855 -5.83889 -3.14347 1.42173 2.18083 2.77704 2.99874 3.21424 3.42627 3.46804 3.48559 3.50827 3.99523 4.22151 4.29006 4.50628 4.53324 4.76292 4.88355 4.92270 4.97755 5.08572 5.13955 5.21391 5.26866 5.40363 5.42177 5.44775 5.45172 5.52704 5.66929 5.81628 5.89110 5.99004 6.03318 6.09360 6.22556 6.38093 6.47751 6.61960 6.71385 6.74314 6.90727 7.49513 7.65634 7.83517 8.22336 8.34065 9.45947 9.98572 10.33958 11.38110 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.003665 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.380477 B = 7637.230450 C = 7989.635733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.170 3.830 11 H 0.049 0.951 12 C -0.125 4.125 13 C -0.132 4.132 14 C 0.103 3.897 15 N -0.598 5.598 16 C 0.587 3.413 17 O -0.523 6.523 18 C -0.049 4.049 19 C 0.048 3.952 20 N -0.483 5.483 21 C 0.199 3.801 22 N -0.458 5.458 23 C 0.092 3.908 24 C -0.129 4.129 25 C -0.041 4.041 26 C 0.092 3.908 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.183 0.817 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -22.247 4.272 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.059 3.941 11 H 0.067 0.933 12 C -0.164 4.164 13 C -0.171 4.171 14 C -0.021 4.021 15 N -0.331 5.331 16 C 0.372 3.628 17 O -0.399 6.399 18 C -0.164 4.164 19 C -0.104 4.104 20 N -0.202 5.202 21 C -0.063 4.063 22 N -0.143 5.143 23 C -0.029 4.029 24 C -0.168 4.168 25 C -0.080 4.080 26 C -0.032 4.032 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.200 0.800 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.927 -21.963 3.648 23.633 hybrid contribution -0.367 1.667 0.295 1.732 sum 7.561 -20.296 3.943 22.014 Atomic orbital electron populations 1.69647 1.05147 1.25998 1.57100 1.24743 0.95508 0.97775 1.02390 0.86265 0.78591 0.83310 0.78036 1.21024 1.21599 1.21182 1.19210 0.91052 0.83958 1.43575 0.91125 1.42355 1.05816 0.99494 1.88051 1.20469 0.94867 0.86560 0.92252 0.93302 1.21822 0.98769 0.93807 1.01992 1.21973 1.00829 0.98673 0.95624 1.21835 0.97194 0.89098 0.93927 1.48253 1.18698 1.11206 1.54986 1.17061 0.80920 0.85120 0.79686 1.90860 1.64998 1.42416 1.41576 1.20882 1.12859 0.97124 0.85529 1.22478 0.99033 0.90117 0.98790 1.69748 1.22591 1.23160 1.04685 1.24426 0.99858 0.89039 0.93022 1.46478 1.43632 1.17188 1.06969 1.22706 1.01896 1.02559 0.75783 1.22777 1.00453 0.95466 0.98058 1.20723 1.04612 0.96413 0.86268 1.22895 0.98051 0.81008 1.01258 0.93326 0.77989 0.91211 0.91832 0.91813 0.90831 0.90636 0.91098 0.79986 0.88683 0.88329 0.89194 0.87661 0.88210 0.88248 0.91725 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.80 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.72 -17.44 5.12 -53.31 -0.27 -17.71 16 10 C 0.17 3.26 2.92 -67.81 -0.20 3.06 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 C -0.13 -1.85 5.35 -26.69 -0.14 -2.00 16 13 C -0.13 -1.44 5.24 -26.61 -0.14 -1.57 16 14 C 0.10 1.22 5.84 -3.71 -0.02 1.20 16 15 N -0.60 -9.40 2.97 -174.28 -0.52 -9.92 16 16 C 0.59 10.10 7.59 -12.81 -0.10 10.01 16 17 O -0.52 -11.09 16.54 5.21 0.09 -11.01 16 18 C -0.05 -0.71 5.63 -82.04 -0.46 -1.18 16 19 C 0.05 0.69 11.85 -17.58 -0.21 0.48 16 20 N -0.48 -6.72 11.21 -10.29 -0.12 -6.83 16 21 C 0.20 2.21 8.56 -154.93 -1.33 0.89 16 22 N -0.46 -5.21 2.67 -108.27 -0.29 -5.50 16 23 C 0.09 0.68 6.07 -3.04 -0.02 0.66 16 24 C -0.13 -0.56 7.18 -25.20 -0.18 -0.74 16 25 C -0.04 -0.24 6.86 -26.61 -0.18 -0.42 16 26 C 0.09 1.73 6.00 -3.71 -0.02 1.71 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.39 9.88 7.80 -40.82 -0.32 9.56 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.66 6.81 -51.93 -0.35 0.31 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.81 4.18 -51.92 -0.22 0.60 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.18 2.31 8.06 -52.49 -0.42 1.88 16 36 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 37 H 0.10 0.59 5.87 -51.93 -0.30 0.29 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.09 2.04 7.04 -51.93 -0.37 1.68 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -34.63 342.37 -9.67 -44.29 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.17 Total: 6.20 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.25 Total: 4.83 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -0.47 Total: -66.92 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.63 -9.67 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999400891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.292 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds