Wall clock time and date at job start Fri Apr 10 2020 17:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48504 * 109.46713 * 240.26915 * 3 2 1 5 5 H 1.48502 * 109.47252 * 0.26847 * 3 2 1 6 6 H 1.48495 * 109.47285 * 120.27039 * 3 2 1 7 7 C 1.38810 * 119.99966 * 180.26524 * 2 1 3 8 8 H 1.08001 * 120.00079 * 179.73210 * 7 2 1 9 9 N 1.36936 * 119.99857 * 359.73043 * 7 2 1 10 10 C 1.46501 * 119.99706 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.49631 * 34.93955 * 10 9 7 12 12 C 1.53046 * 109.49627 * 155.00163 * 10 9 7 13 13 C 1.53042 * 109.53909 * 181.31965 * 12 10 9 14 14 C 1.53193 * 109.30858 * 298.63494 * 13 12 10 15 15 N 1.46921 * 108.77674 * 54.63815 * 14 13 12 16 16 C 1.34778 * 120.63529 * 126.41671 * 15 14 13 17 17 O 1.21676 * 120.00191 * 174.60115 * 16 15 14 18 18 C 1.46764 * 119.99340 * 354.59432 * 16 15 14 19 19 C 1.36552 * 126.84067 * 128.11313 * 18 16 15 20 20 N 1.33173 * 107.79796 * 179.84150 * 19 18 16 21 21 C 1.31364 * 109.76851 * 0.33815 * 20 19 18 22 22 N 1.34262 * 108.97913 * 359.88263 * 21 20 19 23 23 C 1.47002 * 111.33351 * 179.80148 * 22 21 20 24 24 C 1.54395 * 105.48520 * 17.06705 * 23 22 21 25 25 C 1.51654 * 141.06654 * 179.97438 * 21 20 19 26 26 C 1.46930 * 118.73938 * 306.38620 * 15 14 13 27 27 H 0.97004 * 119.99888 * 359.73721 * 1 2 3 28 28 H 0.96993 * 120.00431 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.45999 * 301.33521 * 12 10 9 30 30 H 1.08993 * 109.45913 * 61.30816 * 12 10 9 31 31 H 1.08997 * 109.49671 * 58.58568 * 13 12 10 32 32 H 1.09000 * 109.49914 * 178.68390 * 13 12 10 33 33 H 1.09008 * 109.58312 * 174.42143 * 14 13 12 34 34 H 1.09002 * 109.58885 * 294.84782 * 14 13 12 35 35 H 1.08002 * 126.09990 * 359.97438 * 19 18 16 36 36 H 1.08998 * 110.24727 * 136.07349 * 23 22 21 37 37 H 1.09002 * 110.24236 * 257.97978 * 23 22 21 38 38 H 1.09004 * 110.97938 * 92.46512 * 24 23 22 39 39 H 1.08994 * 110.98372 * 216.26364 * 24 23 22 40 40 H 1.09004 * 110.47536 * 44.67928 * 25 21 20 41 41 H 1.08996 * 110.47927 * 282.06006 * 25 21 20 42 42 H 1.08996 * 109.58561 * 293.82683 * 26 15 14 43 43 H 1.08996 * 109.59047 * 173.39980 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0989 1.6992 -1.2158 5 1 1.2852 2.7465 0.0066 6 1 3.1088 1.6936 1.2091 7 6 2.0102 -1.2021 -0.0056 8 1 3.0902 -1.2021 -0.0099 9 7 1.3255 -2.3880 -0.0055 10 6 2.0580 -3.6567 -0.0119 11 1 2.9720 -3.5520 0.5728 12 6 1.1838 -4.7544 0.5989 13 6 1.9601 -6.0731 0.6228 14 6 2.3138 -6.4787 -0.8115 15 7 3.0300 -5.3684 -1.4540 16 6 4.2301 -5.5692 -2.0336 17 8 4.7681 -4.6666 -2.6472 18 6 4.8881 -6.8765 -1.9245 19 6 5.3828 -7.6322 -2.9486 20 7 5.8995 -8.7415 -2.4233 21 6 5.7490 -8.7270 -1.1183 22 7 5.1256 -7.5921 -0.7633 23 6 4.9259 -7.5243 0.6915 24 6 5.8899 -8.5718 1.2892 25 6 6.0457 -9.5615 0.1127 26 6 2.4128 -4.0350 -1.4533 27 1 -0.4850 0.8401 0.0039 28 1 0.3556 -2.3881 -0.0011 29 1 0.9096 -4.4760 1.6165 30 1 0.2813 -4.8753 -0.0002 31 1 2.8752 -5.9460 1.2011 32 1 1.3455 -6.8489 1.0793 33 1 2.9507 -7.3632 -0.7945 34 1 1.4005 -6.6941 -1.3661 35 1 5.3610 -7.3750 -3.9973 36 1 5.1744 -6.5292 1.0604 37 1 3.8946 -7.7724 0.9426 38 1 6.8472 -8.1187 1.5474 39 1 5.4455 -9.0619 2.1554 40 1 7.0632 -9.9504 0.0736 41 1 5.3280 -10.3769 0.2027 42 1 1.5076 -4.0511 -2.0602 43 1 3.1149 -3.3071 -1.8599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999400891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:21 Heat of formation + Delta-G solvation = 32.731163 kcal Electronic energy + Delta-G solvation = -25622.123118 eV Core-core repulsion = 22089.027187 eV Total energy + Delta-G solvation = -3533.095931 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.67979 -41.04823 -38.85216 -37.32567 -36.30006 -34.09317 -33.01386 -32.78723 -30.43997 -29.61651 -28.58411 -26.52966 -25.94867 -23.64950 -23.39268 -23.10722 -21.35005 -21.25190 -20.14808 -19.20339 -18.75741 -17.53474 -17.35518 -16.77493 -16.42261 -16.10238 -15.70563 -15.56765 -15.33130 -15.22807 -14.98753 -14.81061 -14.38614 -14.35471 -13.97987 -13.90380 -13.70100 -13.18141 -13.13447 -12.92465 -12.61163 -12.48462 -12.29302 -12.13028 -12.00697 -11.92117 -11.79455 -11.48423 -11.41609 -11.15882 -11.01006 -10.68789 -9.93954 -9.50362 -9.06988 -8.01873 -5.31521 0.37685 1.23033 1.42562 1.45484 1.51364 1.69112 1.85686 2.07860 2.50803 2.84500 3.27069 3.31562 3.53995 3.63651 3.75702 3.88779 3.91407 3.96207 4.07405 4.23515 4.27567 4.30875 4.38697 4.45068 4.46054 4.57079 4.63059 4.77875 4.79833 4.88952 4.94369 4.98743 5.02865 5.10610 5.14946 5.29092 5.33774 5.36956 5.47165 5.53728 5.90955 6.20319 6.20974 6.86999 6.89981 7.27692 7.98704 8.24021 9.20383 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.003665 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.380477 B = 7637.230450 C = 7989.635733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.063 4.063 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.170 3.830 11 H 0.035 0.965 12 C -0.117 4.117 13 C -0.120 4.120 14 C 0.100 3.900 15 N -0.593 5.593 16 C 0.586 3.414 17 O -0.578 6.578 18 C -0.073 4.073 19 C 0.042 3.958 20 N -0.516 5.516 21 C 0.210 3.790 22 N -0.458 5.458 23 C 0.076 3.924 24 C -0.114 4.114 25 C -0.039 4.039 26 C 0.106 3.894 27 H 0.254 0.746 28 H 0.378 0.622 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.183 0.817 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.060 0.940 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -25.370 6.703 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.257 4.257 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.367 5.367 10 C 0.060 3.940 11 H 0.053 0.947 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.022 4.022 15 N -0.325 5.325 16 C 0.373 3.627 17 O -0.457 6.457 18 C -0.189 4.189 19 C -0.111 4.111 20 N -0.236 5.236 21 C -0.053 4.053 22 N -0.142 5.142 23 C -0.043 4.043 24 C -0.152 4.152 25 C -0.078 4.078 26 C -0.019 4.019 27 H 0.063 0.937 28 H 0.211 0.789 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.200 0.800 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.163 0.837 40 H 0.132 0.868 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.276 -25.150 6.124 27.176 hybrid contribution -0.419 2.521 -0.455 2.596 sum 7.857 -22.629 5.668 24.616 Atomic orbital electron populations 1.69773 1.06309 1.26341 1.58749 1.25457 0.96346 1.00732 1.03118 0.85331 0.77431 0.79671 0.78057 1.21169 1.21501 1.20184 1.19465 0.91029 0.85476 1.42178 0.91713 1.42487 1.05563 1.00510 1.88187 1.20627 0.94864 0.86240 0.92229 0.94726 1.21727 0.98377 0.94059 1.01376 1.21969 1.01413 0.97390 0.95100 1.22142 0.97480 0.88121 0.94429 1.48239 1.18450 1.10929 1.54845 1.17449 0.80916 0.85612 0.78683 1.90819 1.66386 1.44486 1.44047 1.20370 1.14678 0.96453 0.87356 1.22627 0.98768 0.90555 0.99168 1.69757 1.23948 1.23280 1.06586 1.25545 0.97239 0.89274 0.93288 1.46713 1.43123 1.16575 1.07780 1.23169 1.04264 1.03377 0.73481 1.22873 1.00003 0.93934 0.98352 1.21082 1.06237 0.96636 0.83833 1.22387 0.96759 0.82158 1.00626 0.93732 0.78887 0.91161 0.91565 0.90918 0.86343 0.88817 0.90018 0.80016 0.89772 0.86143 0.89095 0.83719 0.86821 0.85486 0.92131 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.30 13.06 21.65 0.28 -58.02 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.25 -14.13 9.93 84.03 0.83 -13.30 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -36.34 5.12 -322.56 -1.65 -37.99 16 10 C 0.17 6.63 2.92 45.07 0.13 6.76 16 11 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 12 C -0.12 -3.25 5.35 30.62 0.16 -3.09 16 13 C -0.12 -2.16 5.24 30.67 0.16 -2.00 16 14 C 0.10 2.11 5.84 86.36 0.50 2.62 16 15 N -0.59 -18.75 2.97 -823.53 -2.45 -21.20 16 16 C 0.59 20.91 7.59 86.47 0.66 21.57 16 17 O -0.58 -26.23 16.54 -4.27 -0.07 -26.30 16 18 C -0.07 -2.13 5.63 39.93 0.22 -1.91 16 19 C 0.04 1.22 11.85 84.10 1.00 2.22 16 20 N -0.52 -13.89 11.21 -186.46 -2.09 -15.98 16 21 C 0.21 4.14 8.56 138.43 1.19 5.32 16 22 N -0.46 -9.48 2.67 -496.46 -1.32 -10.81 16 23 C 0.08 0.86 6.07 86.76 0.53 1.39 16 24 C -0.11 -0.41 7.18 31.59 0.23 -0.19 16 25 C -0.04 -0.28 6.86 30.67 0.21 -0.07 16 26 C 0.11 4.16 6.00 86.36 0.52 4.68 16 27 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 28 H 0.38 19.84 7.80 -92.71 -0.72 19.11 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.23 6.81 -2.39 -0.02 1.21 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.71 4.18 -2.38 -0.01 1.70 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 37 H 0.12 0.82 5.87 -2.39 -0.01 0.81 16 38 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.14 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.05 2.37 7.04 -2.39 -0.02 2.35 16 Total: -1.00 -80.68 342.37 1.84 -78.83 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.31 Total: 21.61 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.81 Total: 20.81 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -7.23 Total: -144.00 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.07 Total: -26.30 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -80.68 1.84 -78.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999400891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.564 kcal (2) G-P(sol) polarization free energy of solvation -80.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds