Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31931 * 120.17529 * 2 1 4 4 N 1.28280 * 122.32356 * 180.27925 * 3 2 1 5 5 C 1.31916 * 122.51946 * 359.71971 * 4 3 2 6 6 C 1.38502 * 119.96444 * 0.02562 * 5 4 3 7 7 C 1.39730 * 120.17301 * 179.74212 * 2 1 3 8 8 C 1.48134 * 121.14054 * 0.02562 * 7 2 1 9 9 O 1.21512 * 120.00216 * 43.70128 * 8 7 2 10 10 N 1.34781 * 119.99591 * 223.69424 * 8 7 2 11 11 C 1.46494 * 120.00342 * 5.21072 * 10 8 7 12 12 C 1.46507 * 119.99744 * 185.21551 * 10 8 7 13 13 C 1.53040 * 109.46340 * 119.97165 * 12 10 8 14 14 C 1.53159 * 109.32701 * 181.38493 * 13 12 10 15 15 N 1.46927 * 108.76867 * 305.35481 * 14 13 12 16 16 C 1.36939 * 120.63166 * 233.62880 * 15 14 13 17 17 H 1.08001 * 119.99820 * 145.96220 * 16 15 14 18 18 C 1.38805 * 119.99980 * 325.97363 * 16 15 14 19 19 N 1.31615 * 120.00031 * 344.63832 * 18 16 15 20 20 Si 1.86802 * 119.99957 * 164.64951 * 18 16 15 21 21 H 1.48500 * 109.47154 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47397 * 119.99535 * 20 18 16 23 23 H 1.48507 * 109.46978 * 239.99646 * 20 18 16 24 24 C 1.46928 * 118.73683 * 53.61197 * 15 14 13 25 25 C 1.53043 * 109.45821 * 240.02755 * 12 10 8 26 26 H 1.09007 * 109.47036 * 266.58350 * 1 2 3 27 27 H 1.08996 * 109.47048 * 26.57751 * 1 2 3 28 28 H 1.09004 * 109.47280 * 146.58601 * 1 2 3 29 29 H 1.07997 * 120.01104 * 179.97438 * 5 4 3 30 30 H 1.08010 * 121.07944 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47307 * 270.89228 * 11 10 8 32 32 H 1.09003 * 109.47264 * 30.89923 * 11 10 8 33 33 H 1.09004 * 109.47090 * 150.89268 * 11 10 8 34 34 H 1.08999 * 109.45953 * 359.97438 * 12 10 8 35 35 H 1.09000 * 109.49416 * 301.32309 * 13 12 10 36 36 H 1.08999 * 109.49179 * 61.42090 * 13 12 10 37 37 H 1.08998 * 109.59067 * 185.57230 * 14 13 12 38 38 H 1.08999 * 109.70822 * 65.20762 * 14 13 12 39 39 H 0.97003 * 120.00081 * 180.02562 * 19 18 16 40 40 H 1.09009 * 109.58538 * 186.60424 * 24 15 14 41 41 H 1.08997 * 109.70669 * 66.24760 * 24 15 14 42 42 H 1.08994 * 109.49895 * 298.58191 * 25 12 10 43 43 H 1.09010 * 109.49739 * 58.67221 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1886 -0.0053 5 6 4.2024 0.1037 -0.0057 6 6 3.6090 -1.1478 -0.0008 7 6 2.2093 -1.2080 0.0054 8 6 1.4982 -2.5075 0.0107 9 8 0.5394 -2.6784 -0.7160 10 7 1.9148 -3.5003 0.8215 11 6 2.9971 -3.2588 1.7788 12 6 1.2854 -4.8210 0.7454 13 6 2.3404 -5.8685 0.3822 14 6 1.6728 -7.2424 0.2695 15 7 0.9510 -7.5211 1.5185 16 6 1.1814 -8.6779 2.2142 17 1 1.1308 -8.6784 3.2930 18 6 1.4800 -9.8498 1.5329 19 7 1.2506 -9.9359 0.2397 20 14 2.2073 -11.3048 2.4513 21 1 2.3675 -10.9549 3.8856 22 1 1.3002 -12.4736 2.3249 23 1 3.5331 -11.6423 1.8735 24 6 -0.0223 -6.5349 2.0072 25 6 0.6645 -5.1687 2.1003 26 1 -0.3633 -0.0612 1.0259 27 1 -0.3633 0.9190 -0.4598 28 1 -0.3634 -0.8578 -0.5659 29 1 5.2788 0.1914 -0.0106 30 1 4.2060 -2.0479 -0.0006 31 1 3.9555 -3.4714 1.3050 32 1 2.9732 -2.2172 2.0991 33 1 2.8679 -3.9082 2.6447 34 1 0.5073 -4.8090 -0.0179 35 1 2.7986 -5.6077 -0.5718 36 1 3.1055 -5.8983 1.1579 37 1 2.4335 -8.0063 0.1089 38 1 0.9721 -7.2432 -0.5654 39 1 1.4590 -10.7549 -0.2364 40 1 -0.3800 -6.8320 2.9931 41 1 -0.8631 -6.4749 1.3162 42 1 1.4454 -5.2050 2.8598 43 1 -0.0703 -4.4097 2.3693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005665896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = 49.843671 kcal Electronic energy + Delta-G solvation = -25317.109378 eV Core-core repulsion = 21784.755501 eV Total energy + Delta-G solvation = -3532.353877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62424 -39.88272 -37.60588 -35.45166 -34.08182 -33.63978 -32.34150 -30.32065 -29.76967 -28.52738 -27.25485 -26.08810 -24.75996 -23.34420 -22.33088 -22.23172 -20.13754 -19.05746 -18.11581 -17.51116 -16.78658 -16.54907 -16.13504 -15.45746 -15.17244 -14.95912 -14.81188 -14.03026 -13.89135 -13.71087 -13.60243 -13.16377 -13.11931 -13.00633 -12.70953 -12.61109 -12.38274 -12.37847 -11.56052 -11.31359 -11.21399 -10.93226 -10.81753 -10.60604 -10.46232 -10.43471 -10.27452 -10.21169 -9.98727 -9.88636 -9.77152 -9.54953 -8.66352 -8.49964 -6.68727 -5.87369 -3.36158 0.12128 0.53725 2.42674 2.77149 3.22839 3.31048 3.39515 3.41298 3.69305 4.00373 4.05312 4.20843 4.42196 4.47027 4.89364 4.91066 5.13242 5.14663 5.21870 5.24122 5.32396 5.38423 5.40563 5.48546 5.52648 5.62677 5.72912 5.77772 5.93948 6.02434 6.09746 6.18404 6.36133 6.42500 6.48246 6.68273 6.71257 6.86885 7.19047 7.25165 7.50204 7.74339 7.92403 8.35481 8.40401 9.13305 9.74592 10.35033 11.21223 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032032 B = 0.003193 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.906914 B = 8767.415960 C = 9094.224466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.118 3.882 3 N -0.246 5.246 4 N -0.229 5.229 5 C 0.029 3.971 6 C -0.084 4.084 7 C -0.123 4.123 8 C 0.560 3.440 9 O -0.521 6.521 10 N -0.595 5.595 11 C 0.071 3.929 12 C 0.145 3.855 13 C -0.145 4.145 14 C 0.178 3.822 15 N -0.590 5.590 16 C -0.260 4.260 17 H 0.064 0.936 18 C 0.010 3.990 19 N -0.898 5.898 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.148 3.852 25 C -0.139 4.139 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.178 0.822 30 H 0.159 0.841 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.023 0.977 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 17.013 1.468 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.026 4.026 3 N -0.089 5.089 4 N -0.070 5.070 5 C -0.135 4.135 6 C -0.113 4.113 7 C -0.137 4.137 8 C 0.346 3.654 9 O -0.397 6.397 10 N -0.327 5.327 11 C -0.072 4.072 12 C 0.044 3.956 13 C -0.185 4.185 14 C 0.051 3.949 15 N -0.313 5.313 16 C -0.390 4.390 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.541 5.541 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.021 3.979 25 C -0.179 4.179 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.195 0.805 30 H 0.176 0.824 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.624 18.404 0.990 19.002 hybrid contribution 0.813 -2.379 0.427 2.551 sum 5.437 16.024 1.417 16.981 Atomic orbital electron populations 1.21039 0.86685 1.05910 1.04273 1.23066 0.99498 0.88592 0.91449 1.73071 1.01528 1.23994 1.10284 1.72862 0.99640 1.27842 1.06689 1.24288 1.02730 0.89210 0.97292 1.22795 0.93987 1.00635 0.93885 1.21147 0.94823 0.95863 1.01892 1.17978 0.83633 0.82865 0.80937 1.90755 1.26604 1.81123 1.41247 1.48127 1.36338 1.11829 1.36365 1.21944 0.89851 1.01800 0.93596 1.21324 0.96094 0.78837 0.99391 1.22569 0.97947 0.97943 1.00057 1.20657 0.95240 0.90977 0.88030 1.44021 1.42671 1.18877 1.25749 1.19140 1.44110 0.85709 0.90034 0.91874 1.25216 1.00586 0.97227 0.95999 1.70029 1.49280 1.26985 1.07779 0.86257 0.78679 0.82623 0.79372 1.20151 1.21587 1.21505 1.20876 0.91357 0.87489 0.98210 1.22391 0.99992 0.99537 0.95942 0.89755 0.89700 0.87380 0.80460 0.82395 0.92207 0.91792 0.89734 0.88319 0.93039 0.92235 0.90079 0.95852 0.93554 0.92335 0.96106 0.91996 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.75 36.00 0.35 -0.95 16 2 C 0.12 1.44 6.90 -81.99 -0.57 0.87 16 3 N -0.25 -3.19 11.42 33.81 0.39 -2.80 16 4 N -0.23 -2.73 11.48 30.53 0.35 -2.37 16 5 C 0.03 0.25 11.30 -17.42 -0.20 0.05 16 6 C -0.08 -0.74 8.11 -38.78 -0.31 -1.06 16 7 C -0.12 -1.43 4.88 -104.58 -0.51 -1.94 16 8 C 0.56 7.75 6.94 -12.20 -0.08 7.67 16 9 O -0.52 -8.82 13.98 5.36 0.07 -8.74 16 10 N -0.60 -7.79 2.76 -174.89 -0.48 -8.28 16 11 C 0.07 0.69 8.12 59.84 0.49 1.17 16 12 C 0.14 2.33 2.48 -67.88 -0.17 2.16 16 13 C -0.14 -2.53 5.34 -26.63 -0.14 -2.67 16 14 C 0.18 4.00 5.26 -3.73 -0.02 3.98 16 15 N -0.59 -14.06 2.96 -172.34 -0.51 -14.57 16 16 C -0.26 -6.85 9.52 -15.06 -0.14 -6.99 16 17 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 18 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 19 N -0.90 -25.37 11.55 55.49 0.64 -24.73 16 20 Si 0.90 20.91 29.58 -169.99 -5.03 15.88 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 25 C -0.14 -2.24 5.31 -26.61 -0.14 -2.38 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 1.33 5.58 -51.93 -0.29 1.04 16 29 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.16 1.03 6.41 -52.48 -0.34 0.70 16 31 H 0.06 0.48 7.03 -51.93 -0.36 0.11 16 32 H 0.06 0.53 6.48 -51.93 -0.34 0.19 16 33 H 0.08 0.85 6.46 -51.93 -0.34 0.51 16 34 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 37 H 0.08 2.04 6.48 -51.93 -0.34 1.70 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 1.15 7.93 -51.92 -0.41 0.73 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.97 6.72 -51.93 -0.35 0.62 16 43 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -31.35 341.23 -7.01 -38.37 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.03 Total: -0.93 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.56 Total: 3.03 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.39 Total: -52.75 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.35 -7.01 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005665896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.209 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds