Wall clock time and date at job start Fri Apr 10 2020 17:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47192 * 2 1 4 4 C 1.38542 * 120.01580 * 124.99371 * 3 2 1 5 5 C 1.40078 * 117.81778 * 180.02562 * 4 3 2 6 6 C 1.48138 * 121.14596 * 180.02562 * 5 4 3 7 7 O 1.21512 * 119.99855 * 173.94071 * 6 5 4 8 8 N 1.34772 * 120.00110 * 353.94157 * 6 5 4 9 9 C 1.46503 * 120.00226 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.91319 * 328.89711 * 9 8 6 11 11 C 1.55163 * 111.00330 * 205.00060 * 9 8 6 12 12 C 1.54330 * 102.93676 * 206.42193 * 11 9 8 13 13 N 1.47019 * 107.27368 * 22.19589 * 12 11 9 14 14 C 1.36934 * 125.64786 * 181.02137 * 13 12 11 15 15 H 1.08001 * 120.00201 * 171.86641 * 14 13 12 16 16 C 1.38812 * 119.99909 * 351.87112 * 14 13 12 17 17 N 1.31622 * 119.99877 * 168.34498 * 16 14 13 18 18 Si 1.86795 * 120.00290 * 348.34786 * 16 14 13 19 19 H 1.48496 * 109.47514 * 186.28605 * 18 16 14 20 20 H 1.48505 * 109.46950 * 306.28534 * 18 16 14 21 21 H 1.48500 * 109.47146 * 66.28182 * 18 16 14 22 22 C 1.47431 * 108.70307 * 1.28278 * 13 12 11 23 23 C 1.39761 * 117.70523 * 0.27331 * 5 4 3 24 24 C 1.50701 * 120.16984 * 179.70866 * 23 5 4 25 25 N 1.31896 * 119.65898 * 359.44653 * 23 5 4 26 26 N 1.28278 * 122.32279 * 0.58126 * 25 23 5 27 27 H 1.09004 * 109.46766 * 60.00105 * 1 2 3 28 28 H 1.08994 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47395 * 300.00491 * 1 2 3 30 30 H 1.08997 * 109.46976 * 239.99837 * 2 1 3 31 31 H 1.09004 * 109.46766 * 119.99895 * 2 1 3 32 32 H 1.08005 * 121.09372 * 0.02562 * 4 3 2 33 33 H 0.96998 * 120.00049 * 359.97438 * 8 6 5 34 34 H 1.08989 * 110.71991 * 88.06089 * 11 9 8 35 35 H 1.09000 * 110.71786 * 324.78418 * 11 9 8 36 36 H 1.08998 * 109.88141 * 262.77528 * 12 11 9 37 37 H 1.09000 * 110.00521 * 141.68399 * 12 11 9 38 38 H 0.97001 * 119.99939 * 5.08912 * 17 16 14 39 39 H 1.08993 * 110.36147 * 94.48623 * 22 13 12 40 40 H 1.08998 * 110.36519 * 216.81021 * 22 13 12 41 41 H 1.09004 * 109.47324 * 83.48363 * 24 23 5 42 42 H 1.09007 * 109.47061 * 203.47793 * 24 23 5 43 43 H 1.09002 * 109.47743 * 323.47544 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9120 1.8449 0.9827 5 6 3.3491 3.1750 0.9390 6 6 4.2901 3.7060 1.9525 7 8 4.7416 4.8278 1.8336 8 7 4.6453 2.9448 3.0065 9 6 5.5754 3.4701 4.0091 10 1 6.2817 4.1667 3.5574 11 6 6.3183 2.3181 4.7361 12 6 6.6675 2.9413 6.1042 13 7 5.7342 4.0550 6.3275 14 6 5.7234 4.8804 7.4201 15 1 5.0846 5.7511 7.4329 16 6 6.5337 4.5979 8.5112 17 7 6.7007 5.4976 9.4573 18 14 7.3872 2.9411 8.6368 19 1 8.0633 2.8312 9.9544 20 1 6.3827 1.8555 8.5038 21 1 8.3941 2.8195 7.5521 22 6 4.8077 4.1322 5.1833 23 6 2.8628 3.9853 -0.0906 24 6 3.2914 5.4269 -0.1866 25 7 2.0308 3.4804 -0.9809 26 7 1.6343 2.2613 -0.9351 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2496 1.1720 1.7572 33 1 4.2846 2.0494 3.1016 34 1 7.2237 2.0417 4.1959 35 1 5.6638 1.4555 4.8610 36 1 7.6920 3.3130 6.0915 37 1 6.5528 2.1976 6.8928 38 1 6.2007 6.3284 9.4303 39 1 3.8919 3.5819 5.3990 40 1 4.5803 5.1721 4.9488 41 1 4.2497 5.4875 -0.7026 42 1 2.5432 5.9922 -0.7424 43 1 3.3913 5.8439 0.8155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015393388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:10 Heat of formation + Delta-G solvation = 53.566933 kcal Electronic energy + Delta-G solvation = -24626.964214 eV Core-core repulsion = 21094.771790 eV Total energy + Delta-G solvation = -3532.192424 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70750 -39.81624 -37.81472 -35.65157 -34.55105 -33.82897 -32.37122 -31.69852 -29.59821 -28.47277 -27.83320 -26.14036 -24.09578 -23.77949 -22.80321 -21.23418 -20.93869 -20.30424 -18.10359 -17.94848 -17.34476 -16.27660 -16.06819 -15.95300 -15.51324 -15.21444 -14.83865 -14.58589 -14.29328 -13.85027 -13.58590 -13.57908 -13.20682 -12.92907 -12.72683 -12.61339 -12.45865 -12.23471 -12.17604 -11.67340 -11.63076 -11.22010 -11.15846 -11.12586 -10.86450 -10.58105 -10.55085 -10.00543 -9.83510 -9.67427 -9.37532 -9.20319 -9.02928 -8.79365 -7.11052 -6.33178 -3.27176 -0.01369 0.48786 2.50514 2.75966 3.25093 3.32980 3.39576 3.54027 3.63979 3.84577 4.00735 4.20881 4.35078 4.54688 4.62118 4.70210 4.80311 4.82351 4.99753 5.08789 5.13557 5.20454 5.25758 5.30228 5.44764 5.47162 5.51853 5.59599 5.63018 5.70116 5.76484 5.79412 5.90002 5.95769 6.06445 6.22571 6.27087 6.42663 6.59733 6.62609 7.24060 7.58175 7.91098 8.28416 8.34029 9.00376 9.49998 10.15575 11.16863 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.003196 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.179169 B = 8757.569405 C = 9485.511380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 C 0.058 3.942 4 C -0.081 4.081 5 C -0.126 4.126 6 C 0.560 3.440 7 O -0.512 6.512 8 N -0.706 5.706 9 C 0.127 3.873 10 H 0.106 0.894 11 C -0.133 4.133 12 C 0.097 3.903 13 N -0.611 5.611 14 C -0.322 4.322 15 H 0.079 0.921 16 C -0.027 4.027 17 N -0.931 5.931 18 Si 1.084 2.916 19 H -0.301 1.301 20 H -0.298 1.298 21 H -0.286 1.286 22 C 0.130 3.870 23 C 0.119 3.881 24 C -0.106 4.106 25 N -0.242 5.242 26 N -0.221 5.221 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.398 0.602 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 -12.671 -19.873 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.087 4.087 4 C -0.110 4.110 5 C -0.141 4.141 6 C 0.345 3.655 7 O -0.388 6.388 8 N -0.357 5.357 9 C 0.022 3.978 10 H 0.124 0.876 11 C -0.171 4.171 12 C -0.028 4.028 13 N -0.339 5.339 14 C -0.449 4.449 15 H 0.097 0.903 16 C -0.226 4.226 17 N -0.572 5.572 18 Si 0.919 3.081 19 H -0.230 1.230 20 H -0.227 1.227 21 H -0.214 1.214 22 C 0.003 3.997 23 C -0.025 4.025 24 C -0.164 4.164 25 N -0.084 5.084 26 N -0.063 5.063 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.171 0.829 33 H 0.233 0.767 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.676 -12.376 -20.301 24.985 hybrid contribution -0.532 0.065 0.472 0.714 sum -8.209 -12.312 -19.829 24.742 Atomic orbital electron populations 1.21718 0.93548 1.02305 1.02972 1.20467 0.97477 0.88810 1.03896 1.22852 0.94720 0.98788 0.92299 1.22563 0.94803 0.95173 0.98501 1.21168 0.99906 0.94921 0.98077 1.17852 0.81112 0.85444 0.81110 1.90787 1.53757 1.18134 1.76142 1.45858 1.47544 1.18286 1.24037 1.22465 0.91134 0.96480 0.87744 0.87578 1.22844 1.00284 0.97153 0.96843 1.22153 0.95607 0.91065 0.94009 1.44694 1.33457 1.35197 1.20542 1.20194 1.27058 1.04659 0.93022 0.90318 1.25853 0.99129 1.04827 0.92789 1.70901 1.41026 1.08599 1.36716 0.83659 0.75619 0.74495 0.74353 1.22970 1.22737 1.21358 1.21876 0.92479 0.98811 0.86543 1.23170 0.91276 0.98841 0.89232 1.20988 1.01904 0.87739 1.05761 1.73100 1.09139 1.05339 1.20805 1.72748 1.16896 0.97556 1.19145 0.91354 0.91751 0.92664 0.89272 0.89725 0.82874 0.76740 0.90484 0.91044 0.92831 0.94149 0.92841 0.95765 0.93115 0.89321 0.90558 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.78 37.16 0.36 -0.54 16 2 C -0.07 -0.40 6.35 -27.88 -0.18 -0.58 16 3 C 0.06 0.53 6.25 -82.46 -0.52 0.01 16 4 C -0.08 -0.69 9.29 -38.78 -0.36 -1.05 16 5 C -0.13 -1.42 5.92 -104.57 -0.62 -2.04 16 6 C 0.56 7.25 7.73 -12.20 -0.09 7.15 16 7 O -0.51 -8.17 13.18 5.36 0.07 -8.10 16 8 N -0.71 -8.30 5.15 -52.46 -0.27 -8.57 16 9 C 0.13 1.94 3.44 -65.66 -0.23 1.72 16 10 H 0.11 1.79 7.54 -51.93 -0.39 1.40 16 11 C -0.13 -1.93 6.60 -24.89 -0.16 -2.09 16 12 C 0.10 1.97 4.66 -3.06 -0.01 1.96 16 13 N -0.61 -14.64 3.35 -169.93 -0.57 -15.21 16 14 C -0.32 -9.20 10.60 -15.06 -0.16 -9.36 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 17 N -0.93 -29.25 13.70 55.49 0.76 -28.49 16 18 Si 1.08 26.31 24.50 -169.99 -4.17 22.14 16 19 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 20 H -0.30 -6.82 6.46 56.52 0.37 -6.46 16 21 H -0.29 -6.29 5.51 56.52 0.31 -5.98 16 22 C 0.13 2.56 6.93 -2.41 -0.02 2.54 16 23 C 0.12 1.45 6.91 -82.00 -0.57 0.89 16 24 C -0.11 -1.18 8.96 36.01 0.32 -0.86 16 25 N -0.24 -3.15 11.42 33.81 0.39 -2.76 16 26 N -0.22 -2.63 11.04 33.58 0.37 -2.26 16 27 H 0.07 0.50 7.96 -51.93 -0.41 0.09 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.32 7.92 -51.93 -0.41 -0.09 16 32 H 0.15 0.77 6.60 -52.48 -0.35 0.42 16 33 H 0.40 3.35 6.79 -40.82 -0.28 3.08 16 34 H 0.08 0.95 8.14 -51.94 -0.42 0.52 16 35 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 36 H 0.05 1.15 6.26 -51.93 -0.33 0.83 16 37 H 0.04 0.87 3.86 -51.93 -0.20 0.67 16 38 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 43 H 0.11 1.33 5.96 -51.93 -0.31 1.02 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -34.49 343.15 -6.74 -41.23 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.17 Total: -0.02 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.32 Total: -3.13 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.68 Total: -57.29 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.17 Total: 22.14 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.49 -6.74 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015393388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.799 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds