Wall clock time and date at job start Fri Apr 10 2020 17:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47192 * 2 1 4 4 C 1.38542 * 120.01580 * 124.99371 * 3 2 1 5 5 C 1.40078 * 117.81778 * 180.02562 * 4 3 2 6 6 C 1.48138 * 121.14596 * 180.02562 * 5 4 3 7 7 O 1.21512 * 119.99855 * 173.94071 * 6 5 4 8 8 N 1.34772 * 120.00110 * 353.94157 * 6 5 4 9 9 C 1.46503 * 120.00226 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.91319 * 328.89711 * 9 8 6 11 11 C 1.55163 * 111.00330 * 205.00060 * 9 8 6 12 12 C 1.54330 * 102.93676 * 206.42193 * 11 9 8 13 13 N 1.47019 * 107.27368 * 22.19589 * 12 11 9 14 14 C 1.36934 * 125.64786 * 181.02137 * 13 12 11 15 15 H 1.08001 * 120.00201 * 171.86641 * 14 13 12 16 16 C 1.38812 * 119.99909 * 351.87112 * 14 13 12 17 17 N 1.31622 * 119.99877 * 168.34498 * 16 14 13 18 18 Si 1.86795 * 120.00290 * 348.34786 * 16 14 13 19 19 H 1.48496 * 109.47514 * 186.28605 * 18 16 14 20 20 H 1.48505 * 109.46950 * 306.28534 * 18 16 14 21 21 H 1.48500 * 109.47146 * 66.28182 * 18 16 14 22 22 C 1.47431 * 108.70307 * 1.28278 * 13 12 11 23 23 C 1.39761 * 117.70523 * 0.27331 * 5 4 3 24 24 C 1.50701 * 120.16984 * 179.70866 * 23 5 4 25 25 N 1.31896 * 119.65898 * 359.44653 * 23 5 4 26 26 N 1.28278 * 122.32279 * 0.58126 * 25 23 5 27 27 H 1.09004 * 109.46766 * 60.00105 * 1 2 3 28 28 H 1.08994 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47395 * 300.00491 * 1 2 3 30 30 H 1.08997 * 109.46976 * 239.99837 * 2 1 3 31 31 H 1.09004 * 109.46766 * 119.99895 * 2 1 3 32 32 H 1.08005 * 121.09372 * 0.02562 * 4 3 2 33 33 H 0.96998 * 120.00049 * 359.97438 * 8 6 5 34 34 H 1.08989 * 110.71991 * 88.06089 * 11 9 8 35 35 H 1.09000 * 110.71786 * 324.78418 * 11 9 8 36 36 H 1.08998 * 109.88141 * 262.77528 * 12 11 9 37 37 H 1.09000 * 110.00521 * 141.68399 * 12 11 9 38 38 H 0.97001 * 119.99939 * 5.08912 * 17 16 14 39 39 H 1.08993 * 110.36147 * 94.48623 * 22 13 12 40 40 H 1.08998 * 110.36519 * 216.81021 * 22 13 12 41 41 H 1.09004 * 109.47324 * 83.48363 * 24 23 5 42 42 H 1.09007 * 109.47061 * 203.47793 * 24 23 5 43 43 H 1.09002 * 109.47743 * 323.47544 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9120 1.8449 0.9827 5 6 3.3491 3.1750 0.9390 6 6 4.2901 3.7060 1.9525 7 8 4.7416 4.8278 1.8336 8 7 4.6453 2.9448 3.0065 9 6 5.5754 3.4701 4.0091 10 1 6.2817 4.1667 3.5574 11 6 6.3183 2.3181 4.7361 12 6 6.6675 2.9413 6.1042 13 7 5.7342 4.0550 6.3275 14 6 5.7234 4.8804 7.4201 15 1 5.0846 5.7511 7.4329 16 6 6.5337 4.5979 8.5112 17 7 6.7007 5.4976 9.4573 18 14 7.3872 2.9411 8.6368 19 1 8.0633 2.8312 9.9544 20 1 6.3827 1.8555 8.5038 21 1 8.3941 2.8195 7.5521 22 6 4.8077 4.1322 5.1833 23 6 2.8628 3.9853 -0.0906 24 6 3.2914 5.4269 -0.1866 25 7 2.0308 3.4804 -0.9809 26 7 1.6343 2.2613 -0.9351 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.2496 1.1720 1.7572 33 1 4.2846 2.0494 3.1016 34 1 7.2237 2.0417 4.1959 35 1 5.6638 1.4555 4.8610 36 1 7.6920 3.3130 6.0915 37 1 6.5528 2.1976 6.8928 38 1 6.2007 6.3284 9.4303 39 1 3.8919 3.5819 5.3990 40 1 4.5803 5.1721 4.9488 41 1 4.2497 5.4875 -0.7026 42 1 2.5432 5.9922 -0.7424 43 1 3.3913 5.8439 0.8155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015393388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:08 Heat of formation + Delta-G solvation = 27.450520 kcal Electronic energy + Delta-G solvation = -24628.096707 eV Core-core repulsion = 21094.771790 eV Total energy + Delta-G solvation = -3533.324917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54578 -40.90299 -39.24945 -36.41487 -35.79288 -34.83404 -34.10228 -32.53784 -31.18867 -29.77287 -28.81957 -27.08467 -25.76916 -24.47925 -23.68719 -22.75501 -22.02834 -21.68830 -19.73375 -18.82764 -18.71167 -17.49296 -17.11355 -16.84660 -16.78093 -16.21799 -15.84262 -15.68884 -15.47814 -15.08653 -14.93841 -14.53778 -14.35881 -14.16724 -14.02749 -13.92204 -13.37004 -13.22513 -13.10379 -13.03338 -12.73586 -12.54828 -12.34303 -12.14992 -11.84687 -11.70528 -11.46655 -11.40149 -11.35522 -11.03740 -10.79857 -10.65844 -10.54382 -10.25445 -9.13715 -8.65251 -5.51085 -0.83087 -0.27381 1.39975 1.52274 1.54379 1.69522 1.78279 2.40795 2.56630 2.80599 3.04967 3.14713 3.23037 3.31602 3.47689 3.57484 3.70589 3.81570 3.97717 4.06746 4.10512 4.30632 4.38558 4.40133 4.47011 4.55198 4.63471 4.64307 4.70162 4.80578 4.84930 4.89920 4.92662 5.05309 5.07653 5.15082 5.19109 5.25029 5.35625 5.43468 5.51097 6.05957 6.30392 6.80484 6.96547 7.40378 7.53191 8.04161 8.85527 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.003196 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.179169 B = 8757.569405 C = 9485.511380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 C 0.059 3.941 4 C -0.059 4.059 5 C -0.139 4.139 6 C 0.563 3.437 7 O -0.549 6.549 8 N -0.688 5.688 9 C 0.145 3.855 10 H 0.089 0.911 11 C -0.113 4.113 12 C 0.082 3.918 13 N -0.633 5.633 14 C -0.315 4.315 15 H 0.037 0.963 16 C -0.088 4.088 17 N -0.967 5.967 18 Si 1.123 2.877 19 H -0.316 1.316 20 H -0.270 1.270 21 H -0.246 1.246 22 C 0.125 3.875 23 C 0.105 3.895 24 C -0.101 4.101 25 N -0.269 5.269 26 N -0.246 5.246 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.199 0.801 33 H 0.419 0.581 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.244 0.756 39 H 0.038 0.962 40 H 0.019 0.981 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 -17.444 -21.305 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.086 4.086 4 C -0.088 4.088 5 C -0.153 4.153 6 C 0.349 3.651 7 O -0.427 6.427 8 N -0.341 5.341 9 C 0.039 3.961 10 H 0.107 0.893 11 C -0.151 4.151 12 C -0.042 4.042 13 N -0.361 5.361 14 C -0.444 4.444 15 H 0.055 0.945 16 C -0.279 4.279 17 N -0.612 5.612 18 Si 0.949 3.051 19 H -0.246 1.246 20 H -0.197 1.197 21 H -0.171 1.171 22 C -0.001 4.001 23 C -0.040 4.040 24 C -0.159 4.159 25 N -0.110 5.110 26 N -0.088 5.088 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.216 0.784 33 H 0.258 0.742 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.428 -17.182 -21.818 28.748 hybrid contribution -0.772 1.615 0.864 1.987 sum -8.200 -15.567 -20.954 27.362 Atomic orbital electron populations 1.21716 0.93997 1.03165 1.01697 1.20666 0.96984 0.86768 1.06066 1.23455 0.94019 0.99805 0.91315 1.23033 0.92923 0.94234 0.98610 1.20994 1.00395 0.96227 0.97649 1.18082 0.80739 0.84902 0.81351 1.90789 1.55044 1.19877 1.76972 1.45527 1.46857 1.19023 1.22660 1.21968 0.90613 0.96744 0.86755 0.89293 1.22837 1.02430 0.96956 0.92912 1.22378 0.94208 0.89881 0.97743 1.44726 1.35462 1.35830 1.20132 1.20053 1.25427 1.04000 0.94897 0.94490 1.27418 1.00443 1.07730 0.92351 1.71029 1.42647 1.08904 1.38600 0.83278 0.76216 0.70753 0.74810 1.24578 1.19734 1.17098 1.22021 0.93021 0.97915 0.87180 1.23257 0.91685 0.99197 0.89870 1.20890 1.02233 0.87963 1.04799 1.73063 1.10012 1.06291 1.21659 1.72672 1.17733 0.97622 1.20742 0.93308 0.89825 0.93321 0.88256 0.86305 0.78386 0.74168 0.86983 0.87217 0.93978 0.93837 0.94716 0.94439 0.96237 0.89224 0.89847 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.78 71.98 0.70 -0.68 16 2 C -0.07 -0.49 6.35 29.85 0.19 -0.30 16 3 C 0.06 0.89 6.25 42.62 0.27 1.16 16 4 C -0.06 -0.75 9.29 22.79 0.21 -0.54 16 5 C -0.14 -2.80 5.92 -19.83 -0.12 -2.91 16 6 C 0.56 13.40 7.73 86.87 0.67 14.07 16 7 O -0.55 -17.40 13.18 -3.75 -0.05 -17.45 16 8 N -0.69 -13.39 5.15 -438.19 -2.26 -15.64 16 9 C 0.15 4.01 3.44 46.46 0.16 4.17 16 10 H 0.09 2.84 7.54 -2.39 -0.02 2.82 16 11 C -0.11 -2.64 6.60 31.79 0.21 -2.43 16 12 C 0.08 3.05 4.66 86.73 0.40 3.45 16 13 N -0.63 -29.89 3.35 -691.55 -2.32 -32.21 16 14 C -0.32 -18.56 10.60 84.03 0.89 -17.67 16 15 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 16 C -0.09 -5.27 5.50 84.86 0.47 -4.80 16 17 N -0.97 -63.20 13.70 21.65 0.30 -62.91 16 18 Si 1.12 51.71 24.50 68.60 1.68 53.39 16 19 H -0.32 -15.24 7.11 99.48 0.71 -14.53 16 20 H -0.27 -11.12 6.46 99.48 0.64 -10.48 16 21 H -0.25 -9.73 5.51 99.48 0.55 -9.19 16 22 C 0.13 4.80 6.93 86.93 0.60 5.41 16 23 C 0.10 2.51 6.91 42.92 0.30 2.81 16 24 C -0.10 -2.32 8.96 71.24 0.64 -1.68 16 25 N -0.27 -6.90 11.42 -46.94 -0.54 -7.43 16 26 N -0.25 -5.54 11.04 -47.69 -0.53 -6.07 16 27 H 0.05 0.65 7.96 -2.39 -0.02 0.63 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 0.13 7.92 -2.39 -0.02 0.11 16 32 H 0.20 0.59 6.60 -2.91 -0.02 0.57 16 33 H 0.42 4.46 6.79 -92.71 -0.63 3.83 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.11 1.80 8.00 -2.39 -0.02 1.78 16 36 H 0.04 1.67 6.26 -2.39 -0.01 1.65 16 37 H 0.04 1.65 3.86 -2.39 -0.01 1.64 16 38 H 0.24 16.15 8.73 -92.71 -0.81 15.34 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.09 2.35 5.96 -2.39 -0.01 2.34 16 Total: -1.00 -82.13 343.15 2.03 -80.10 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.15 Total: 8.18 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.59 Total: 0.04 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -5.34 Total: -124.26 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 1.68 Total: 53.39 kcal Total: -82.13 2.03 -80.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015393388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.547 kcal (2) G-P(sol) polarization free energy of solvation -82.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds