Wall clock time and date at job start Fri Apr 10 2020 17:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00350 * 2 1 4 4 H 1.48507 * 109.47039 * 270.00106 * 3 2 1 5 5 H 1.48502 * 109.47023 * 29.99399 * 3 2 1 6 6 H 1.48497 * 109.47438 * 150.00038 * 3 2 1 7 7 C 1.38813 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99905 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99986 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64267 * 323.30935 * 10 9 7 12 12 C 1.55157 * 110.72116 * 86.45479 * 10 9 7 13 13 C 1.54906 * 101.58233 * 153.86224 * 12 10 9 14 14 N 1.47427 * 104.83586 * 322.99598 * 13 12 10 15 15 C 1.34775 * 125.64733 * 204.09574 * 14 13 12 16 16 O 1.21283 * 119.99682 * 185.05942 * 15 14 13 17 17 C 1.50700 * 120.00056 * 5.05129 * 15 14 13 18 18 H 1.08993 * 109.71973 * 25.67386 * 17 15 14 19 19 C 1.53437 * 109.72003 * 265.05481 * 17 15 14 20 20 C 1.53161 * 109.18732 * 191.73339 * 19 17 15 21 21 C 1.53234 * 109.55547 * 69.44201 * 20 19 17 22 22 N 1.46593 * 108.91242 * 309.34269 * 21 20 19 23 23 N 1.39389 * 127.76124 * 197.28867 * 22 21 20 24 24 C 1.31029 * 108.21023 * 179.97438 * 23 22 21 25 25 C 1.40065 * 108.25038 * 0.06620 * 24 23 22 26 26 C 1.34743 * 107.80026 * 0.02562 * 25 24 23 27 27 C 1.47024 * 108.70159 * 24.34927 * 14 13 12 28 28 H 0.96998 * 119.99787 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00319 * 0.02562 * 9 7 2 30 30 H 1.08999 * 110.99860 * 35.78801 * 12 10 9 31 31 H 1.09000 * 111.00328 * 271.94055 * 12 10 9 32 32 H 1.08994 * 110.36723 * 204.14811 * 13 12 10 33 33 H 1.09001 * 110.36430 * 81.83045 * 13 12 10 34 34 H 1.08998 * 109.51815 * 71.81925 * 19 17 15 35 35 H 1.09001 * 109.56871 * 311.67181 * 19 17 15 36 36 H 1.09002 * 109.45347 * 309.41082 * 20 19 17 37 37 H 1.09000 * 109.45166 * 189.46777 * 20 19 17 38 38 H 1.09000 * 109.58799 * 69.20891 * 21 20 19 39 39 H 1.09003 * 109.58266 * 189.48189 * 21 20 19 40 40 H 1.07993 * 125.87965 * 180.02562 * 24 23 22 41 41 H 1.08001 * 126.09718 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.87775 * 118.13527 * 27 14 13 43 43 H 1.08999 * 109.88586 * 239.30027 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9585 -3.5806 -0.6089 12 6 2.4102 -4.0874 1.4490 13 6 2.5142 -5.6257 1.2995 14 7 1.4564 -5.9839 0.3372 15 6 0.8633 -7.1897 0.2347 16 8 0.0673 -7.4002 -0.6558 17 6 1.1892 -8.2766 1.2265 18 1 1.5238 -7.8312 2.1633 19 6 2.2920 -9.1806 0.6600 20 6 2.4100 -10.4359 1.5296 21 6 1.1652 -11.3094 1.3410 22 7 -0.0295 -10.4794 1.5221 23 7 -1.3347 -10.9037 1.7662 24 6 -2.0983 -9.8435 1.8641 25 6 -1.2982 -8.7083 1.6829 26 6 -0.0339 -9.1246 1.4733 27 6 1.1600 -4.8095 -0.4963 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 1.6141 -3.8151 2.1419 31 1 3.3625 -3.6600 1.7630 32 1 2.3359 -6.1129 2.2581 33 1 3.4929 -5.9035 0.9082 34 1 3.2408 -8.6441 0.6643 35 1 2.0403 -9.4674 -0.3611 36 1 2.4946 -10.1454 2.5768 37 1 3.2963 -10.9986 1.2364 38 1 1.1658 -11.7347 0.3374 39 1 1.1673 -12.1124 2.0781 40 1 -3.1619 -9.8447 2.0516 41 1 -1.6346 -7.6823 1.7069 42 1 1.3811 -5.0307 -1.5404 43 1 0.1112 -4.5331 -0.3878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019057187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:14 Heat of formation + Delta-G solvation = 36.617021 kcal Electronic energy + Delta-G solvation = -24976.695574 eV Core-core repulsion = 21443.768146 eV Total energy + Delta-G solvation = -3532.927428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 5.12 seconds Orbital eigenvalues (eV) -42.68304 -40.99476 -38.77714 -37.30545 -35.91272 -33.87784 -33.10507 -31.30487 -30.98945 -29.82610 -28.87683 -26.31692 -25.28517 -24.00358 -23.28188 -22.23288 -21.60886 -20.67776 -19.72973 -19.30987 -18.37355 -17.78821 -17.29768 -16.59075 -16.41016 -16.17996 -15.65133 -15.41726 -15.34534 -15.18945 -14.71601 -14.63637 -14.46450 -14.20840 -13.86273 -13.46660 -13.39518 -13.16069 -13.02597 -12.94807 -12.65550 -12.50590 -12.33609 -12.11640 -12.07569 -12.01218 -11.75116 -11.68180 -11.58845 -10.94217 -10.92409 -10.19320 -9.70728 -9.55019 -9.02932 -7.93454 -5.23740 0.77496 1.37101 1.50537 1.52059 1.60255 1.62899 1.76506 1.99889 2.58461 3.20892 3.38236 3.46983 3.50112 3.63568 3.77484 3.80926 3.97297 4.00190 4.08174 4.17910 4.30918 4.31593 4.44155 4.50807 4.54167 4.61888 4.66930 4.72118 4.78644 4.86358 4.88177 4.94924 5.02150 5.12990 5.16311 5.21534 5.28807 5.47758 5.56232 5.65577 6.01744 6.27020 6.49308 6.69625 7.06082 7.33367 8.05818 8.28779 9.30231 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029889 B = 0.002955 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.583145 B = 9473.350139 C =10006.218222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.263 1.263 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.733 5.733 10 C 0.165 3.835 11 H 0.072 0.928 12 C -0.146 4.146 13 C 0.102 3.898 14 N -0.608 5.608 15 C 0.534 3.466 16 O -0.580 6.580 17 C -0.034 4.034 18 H 0.141 0.859 19 C -0.113 4.113 20 C -0.121 4.121 21 C 0.116 3.884 22 N -0.368 5.368 23 N -0.321 5.321 24 C 0.038 3.962 25 C -0.277 4.277 26 C 0.093 3.907 27 C 0.110 3.890 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.206 0.794 41 H 0.133 0.867 42 H 0.061 0.939 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 -23.058 6.920 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.187 1.187 7 C -0.368 4.368 8 H 0.104 0.896 9 N -0.372 5.372 10 C 0.056 3.944 11 H 0.090 0.910 12 C -0.187 4.187 13 C -0.020 4.020 14 N -0.341 5.341 15 C 0.323 3.677 16 O -0.460 6.460 17 C -0.056 4.056 18 H 0.158 0.842 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.004 4.004 22 N -0.152 5.152 23 N -0.143 5.143 24 C -0.146 4.146 25 C -0.306 4.306 26 C -0.035 4.035 27 C -0.014 4.014 28 H 0.059 0.941 29 H 0.203 0.797 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.223 0.777 41 H 0.151 0.849 42 H 0.079 0.921 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.734 -24.524 6.462 27.165 hybrid contribution -1.049 2.321 -0.412 2.580 sum 8.686 -22.203 6.050 24.597 Atomic orbital electron populations 1.69834 1.06853 1.26056 1.59558 1.25602 0.96282 1.01290 1.03780 0.85132 0.77880 0.79411 0.77272 1.21743 1.22737 1.18739 1.19642 0.91709 0.84621 1.40850 0.89642 1.42569 1.05350 1.00826 1.88497 1.21403 0.93747 0.83781 0.95512 0.91048 1.23368 1.02647 0.94330 0.98309 1.22682 0.90918 0.95156 0.93196 1.48500 1.39471 1.09684 1.36428 1.20346 0.79758 0.82128 0.85480 1.90719 1.36917 1.81274 1.37079 1.20156 0.92821 0.92663 0.99978 0.84166 1.21717 0.97879 0.96097 0.99447 1.21985 0.96856 0.95128 1.01889 1.22256 0.80057 0.94060 1.03977 1.48972 1.07220 1.04104 1.54952 1.77071 0.88449 1.24047 1.24729 1.24281 1.01259 0.89297 0.99789 1.21201 0.93081 1.00272 1.16040 1.20612 0.96462 0.85353 1.01086 1.21979 0.99121 0.85665 0.94622 0.94133 0.79737 0.92654 0.88960 0.87816 0.87860 0.86529 0.92246 0.89001 0.84883 0.89638 0.87316 0.77749 0.84858 0.92073 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 2 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.24 -12.42 9.98 84.03 0.84 -11.58 16 8 H 0.09 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.73 -35.31 5.25 -317.30 -1.67 -36.98 16 10 C 0.17 5.89 3.58 46.18 0.17 6.06 16 11 H 0.07 2.45 8.12 -2.39 -0.02 2.44 16 12 C -0.15 -4.05 6.77 31.99 0.22 -3.84 16 13 C 0.10 1.94 6.72 86.85 0.58 2.52 16 14 N -0.61 -16.52 3.33 -811.77 -2.70 -19.22 16 15 C 0.53 15.32 6.58 87.66 0.58 15.90 16 16 O -0.58 -22.56 16.45 -3.04 -0.05 -22.61 16 17 C -0.03 -0.66 2.52 -12.08 -0.03 -0.69 16 18 H 0.14 1.95 6.43 -2.39 -0.02 1.93 16 19 C -0.11 -1.42 5.28 30.79 0.16 -1.25 16 20 C -0.12 -0.86 5.93 30.73 0.18 -0.68 16 21 C 0.12 1.56 7.27 86.44 0.63 2.19 16 22 N -0.37 -8.67 4.04 -333.89 -1.35 -10.02 16 23 N -0.32 -8.85 12.61 -56.80 -0.72 -9.57 16 24 C 0.04 1.00 12.03 85.26 1.03 2.03 16 25 C -0.28 -7.92 9.97 21.91 0.22 -7.70 16 26 C 0.09 2.36 5.75 41.24 0.24 2.60 16 27 C 0.11 3.81 6.63 86.73 0.58 4.38 16 28 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.37 19.90 7.51 -92.71 -0.70 19.21 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 32 H 0.10 1.36 6.63 -2.39 -0.02 1.34 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 36 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 37 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.69 7.69 -2.39 -0.02 1.67 16 Total: -1.00 -77.92 350.10 2.00 -75.92 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.32 Total: 28.41 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.85 Total: 6.09 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -6.15 Total: -134.53 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -77.92 2.00 -75.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019057187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.541 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.12 seconds