Wall clock time and date at job start Fri Apr 10 2020 17:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47048 * 270.00018 * 3 2 1 5 5 H 1.48503 * 109.47017 * 29.99742 * 3 2 1 6 6 H 1.48500 * 109.47468 * 149.99880 * 3 2 1 7 7 C 1.38812 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99682 * 359.72368 * 7 2 1 9 9 N 1.36934 * 120.00034 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00080 * 179.72015 * 9 7 2 11 11 H 1.08992 * 110.89010 * 325.70210 * 10 9 7 12 12 C 1.55161 * 111.00358 * 89.58548 * 10 9 7 13 13 C 1.54317 * 102.94416 * 153.57635 * 12 10 9 14 14 N 1.47022 * 107.27380 * 337.80588 * 13 12 10 15 15 C 1.34774 * 125.65096 * 178.97848 * 14 13 12 16 16 O 1.21279 * 120.00046 * 174.95518 * 15 14 13 17 17 C 1.50701 * 119.99584 * 354.94951 * 15 14 13 18 18 H 1.08998 * 109.72370 * 335.62367 * 17 15 14 19 19 C 1.53439 * 109.72418 * 96.29635 * 17 15 14 20 20 C 1.53150 * 109.19262 * 168.24373 * 19 17 15 21 21 C 1.53243 * 109.55874 * 290.56206 * 20 19 17 22 22 N 1.46591 * 108.80073 * 50.56192 * 21 20 19 23 23 N 1.39654 * 127.55081 * 162.70362 * 22 21 20 24 24 C 1.31025 * 108.12639 * 180.02562 * 23 22 21 25 25 C 1.40057 * 108.25857 * 359.96736 * 24 23 22 26 26 C 1.34748 * 107.79506 * 359.97438 * 25 24 23 27 27 C 1.47469 * 108.71847 * 358.97607 * 14 13 12 28 28 H 0.97005 * 119.99872 * 0.02562 * 1 2 3 29 29 H 0.97008 * 120.00272 * 359.72548 * 9 7 2 30 30 H 1.09004 * 110.71654 * 271.94187 * 12 10 9 31 31 H 1.08997 * 110.71921 * 35.03039 * 12 10 9 32 32 H 1.09003 * 109.88268 * 97.22591 * 13 12 10 33 33 H 1.09004 * 109.88211 * 218.23142 * 13 12 10 34 34 H 1.09002 * 109.51434 * 288.15762 * 19 17 15 35 35 H 1.08999 * 109.52130 * 48.32384 * 19 17 15 36 36 H 1.08996 * 109.45484 * 170.53523 * 20 19 17 37 37 H 1.09001 * 109.44326 * 50.58117 * 20 19 17 38 38 H 1.08999 * 109.58683 * 290.76186 * 21 20 19 39 39 H 1.09001 * 109.69422 * 170.41389 * 21 20 19 40 40 H 1.08004 * 125.86774 * 179.97438 * 24 23 22 41 41 H 1.07991 * 126.10164 * 179.97438 * 25 24 23 42 42 H 1.09003 * 110.34739 * 265.25398 * 27 14 13 43 43 H 1.09003 * 110.40561 * 142.92089 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 0.0036 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0056 11 1 3.5777 -3.2256 0.5824 12 6 4.3816 -2.9638 -1.4407 13 6 5.6528 -3.8241 -1.2814 14 7 6.3274 -3.3827 -0.0519 15 6 7.4660 -3.9014 0.4489 16 8 7.9844 -3.3985 1.4232 17 6 8.0949 -5.1065 -0.2017 18 1 7.3354 -5.6709 -0.7427 19 6 9.1955 -4.6562 -1.1715 20 6 10.0181 -5.8748 -1.6004 21 6 10.8408 -6.3826 -0.4114 22 7 9.9525 -6.5436 0.7435 23 7 10.1932 -7.2782 1.9066 24 6 9.1464 -7.1620 2.6860 25 6 8.2071 -6.3477 2.0408 26 6 8.7266 -5.9815 0.8527 27 6 5.5522 -2.2782 0.5429 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3620 -0.0033 30 1 3.5500 -3.5679 -1.8034 31 1 4.5640 -2.1211 -2.1076 32 1 5.3803 -4.8761 -1.1975 33 1 6.3088 -3.6786 -2.1397 34 1 8.7415 -4.1961 -2.0491 35 1 9.8448 -3.9346 -0.6758 36 1 10.6888 -5.5926 -2.4119 37 1 9.3475 -6.6636 -1.9412 38 1 11.6226 -5.6613 -0.1733 39 1 11.2931 -7.3424 -0.6609 40 1 9.0283 -7.6160 3.6588 41 1 7.2392 -6.0640 2.4267 42 1 5.9523 -1.3172 0.2195 43 1 5.5638 -2.3483 1.6306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019057188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:33 Heat of formation + Delta-G solvation = 63.017503 kcal Electronic energy + Delta-G solvation = -24996.666083 eV Core-core repulsion = 21464.883466 eV Total energy + Delta-G solvation = -3531.782617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81553 -39.90194 -37.60519 -36.57194 -34.34805 -32.92390 -31.61039 -30.54993 -29.93003 -28.80038 -27.89249 -25.36545 -23.45267 -22.73718 -22.59789 -21.30635 -20.31991 -19.73114 -18.85954 -17.83033 -17.30515 -16.96431 -16.07445 -15.83429 -15.20572 -14.91498 -14.61666 -14.51122 -14.18226 -13.93409 -13.68259 -13.53735 -13.40177 -12.91916 -12.72154 -12.65981 -12.31346 -12.26516 -11.94376 -11.78517 -11.51939 -11.48649 -11.44700 -10.95296 -10.81361 -10.74059 -10.53906 -10.13553 -9.86266 -9.68649 -9.32798 -9.03840 -8.64631 -8.56621 -7.41238 -5.86625 -3.24661 1.69807 2.22883 2.56539 2.71665 3.01183 3.32079 3.35162 3.40866 3.96229 4.11464 4.23801 4.27741 4.50726 4.57202 4.78206 4.79283 4.82717 4.86016 5.08560 5.13016 5.15322 5.20222 5.25383 5.34147 5.35727 5.47265 5.54237 5.57705 5.65281 5.66657 5.79258 5.80957 6.04286 6.05265 6.19060 6.35984 6.46344 6.56446 6.71668 6.81851 7.52514 7.59937 7.86901 8.12220 8.31661 9.08106 9.80445 9.98231 11.31012 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.003040 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.857620 B = 9207.982232 C = 9481.818944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.738 5.738 10 C 0.177 3.823 11 H 0.074 0.926 12 C -0.154 4.154 13 C 0.098 3.902 14 N -0.611 5.611 15 C 0.538 3.462 16 O -0.529 6.529 17 C -0.041 4.041 18 H 0.113 0.887 19 C -0.116 4.116 20 C -0.133 4.133 21 C 0.132 3.868 22 N -0.369 5.369 23 N -0.296 5.296 24 C 0.045 3.955 25 C -0.247 4.247 26 C 0.101 3.899 27 C 0.097 3.903 28 H 0.261 0.739 29 H 0.364 0.636 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.184 0.816 41 H 0.145 0.855 42 H 0.066 0.934 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.138 -13.878 -5.094 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.380 5.380 10 C 0.066 3.934 11 H 0.092 0.908 12 C -0.195 4.195 13 C -0.025 4.025 14 N -0.345 5.345 15 C 0.324 3.676 16 O -0.405 6.405 17 C -0.064 4.064 18 H 0.131 0.869 19 C -0.154 4.154 20 C -0.171 4.171 21 C 0.010 3.990 22 N -0.153 5.153 23 N -0.117 5.117 24 C -0.140 4.140 25 C -0.276 4.276 26 C -0.026 4.026 27 C -0.026 4.026 28 H 0.071 0.929 29 H 0.197 0.803 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.201 0.799 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.489 -14.193 -4.759 26.190 hybrid contribution -0.339 1.585 0.043 1.621 sum 21.150 -12.608 -4.715 25.070 Atomic orbital electron populations 1.69693 1.05138 1.26050 1.56752 1.24673 0.95226 0.97280 1.01528 0.86578 0.79338 0.84937 0.77848 1.20973 1.21586 1.20178 1.19029 0.80125 0.94870 1.43975 0.88966 1.42610 1.04162 1.01479 1.89729 1.21265 0.89192 0.90051 0.92939 0.90765 1.23381 0.95024 0.99562 1.01571 1.22165 0.95003 0.99173 0.86169 1.48418 1.23784 1.36107 1.26203 1.19647 0.79686 0.84285 0.83959 1.90740 1.61402 1.61554 1.26762 1.20043 0.98278 0.93777 0.94335 0.86936 1.21630 0.96530 0.98250 0.98971 1.21946 0.99755 0.98403 0.96999 1.21789 0.92023 1.02902 0.82238 1.48589 1.12977 1.38778 1.14936 1.77246 1.23424 1.17197 0.93806 1.23889 0.91303 0.98969 0.99828 1.21040 1.03396 1.07503 0.95710 1.20222 0.87588 0.97767 0.97034 1.22600 0.91886 0.89100 0.99060 0.92874 0.80310 0.90109 0.90572 0.91523 0.91835 0.89466 0.90252 0.88406 0.90204 0.89895 0.88881 0.79924 0.83709 0.91589 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.97 55.49 0.78 -27.47 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.30 27.73 -169.99 -4.71 16.58 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 7 C -0.25 -6.67 10.46 -15.06 -0.16 -6.83 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.74 -16.26 5.07 -51.36 -0.26 -16.52 16 10 C 0.18 3.09 3.70 -65.78 -0.24 2.84 16 11 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 12 C -0.15 -2.19 6.65 -24.90 -0.17 -2.35 16 13 C 0.10 1.07 6.20 -3.07 -0.02 1.05 16 14 N -0.61 -8.24 3.33 -170.48 -0.57 -8.81 16 15 C 0.54 7.52 6.56 -10.99 -0.07 7.44 16 16 O -0.53 -9.53 16.47 5.56 0.09 -9.44 16 17 C -0.04 -0.43 2.54 -92.61 -0.24 -0.67 16 18 H 0.11 0.95 6.91 -51.93 -0.36 0.59 16 19 C -0.12 -0.91 5.28 -26.43 -0.14 -1.05 16 20 C -0.13 -0.74 5.93 -26.53 -0.16 -0.89 16 21 C 0.13 1.01 7.28 -3.87 -0.03 0.99 16 22 N -0.37 -4.39 4.04 -56.95 -0.23 -4.62 16 23 N -0.30 -3.96 12.62 30.70 0.39 -3.58 16 24 C 0.05 0.56 12.03 -17.21 -0.21 0.35 16 25 C -0.25 -3.24 10.00 -40.14 -0.40 -3.65 16 26 C 0.10 1.26 5.75 -82.21 -0.47 0.79 16 27 C 0.10 1.54 6.52 -2.51 -0.02 1.52 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.36 7.94 5.60 -40.82 -0.23 7.71 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.61 7.64 -51.93 -0.40 0.22 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.18 1.62 8.06 -52.48 -0.42 1.19 16 41 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 43 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -34.46 348.35 -8.16 -42.62 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.48 Total: 6.26 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.41 Total: -0.28 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.11 Total: -60.99 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.46 -8.16 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019057188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.633 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds