Wall clock time and date at job start Fri Apr 10 2020 17:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47048 * 270.00018 * 3 2 1 5 5 H 1.48503 * 109.47017 * 29.99742 * 3 2 1 6 6 H 1.48500 * 109.47468 * 149.99880 * 3 2 1 7 7 C 1.38812 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99682 * 359.72368 * 7 2 1 9 9 N 1.36934 * 120.00034 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00080 * 179.72015 * 9 7 2 11 11 H 1.08992 * 110.89010 * 325.70210 * 10 9 7 12 12 C 1.55161 * 111.00358 * 89.58548 * 10 9 7 13 13 C 1.54317 * 102.94416 * 153.57635 * 12 10 9 14 14 N 1.47022 * 107.27380 * 337.80588 * 13 12 10 15 15 C 1.34774 * 125.65096 * 178.97848 * 14 13 12 16 16 O 1.21279 * 120.00046 * 174.95518 * 15 14 13 17 17 C 1.50701 * 119.99584 * 354.94951 * 15 14 13 18 18 H 1.08998 * 109.72370 * 335.62367 * 17 15 14 19 19 C 1.53439 * 109.72418 * 96.29635 * 17 15 14 20 20 C 1.53150 * 109.19262 * 168.24373 * 19 17 15 21 21 C 1.53243 * 109.55874 * 290.56206 * 20 19 17 22 22 N 1.46591 * 108.80073 * 50.56192 * 21 20 19 23 23 N 1.39654 * 127.55081 * 162.70362 * 22 21 20 24 24 C 1.31025 * 108.12639 * 180.02562 * 23 22 21 25 25 C 1.40057 * 108.25857 * 359.96736 * 24 23 22 26 26 C 1.34748 * 107.79506 * 359.97438 * 25 24 23 27 27 C 1.47469 * 108.71847 * 358.97607 * 14 13 12 28 28 H 0.97005 * 119.99872 * 0.02562 * 1 2 3 29 29 H 0.97008 * 120.00272 * 359.72548 * 9 7 2 30 30 H 1.09004 * 110.71654 * 271.94187 * 12 10 9 31 31 H 1.08997 * 110.71921 * 35.03039 * 12 10 9 32 32 H 1.09003 * 109.88268 * 97.22591 * 13 12 10 33 33 H 1.09004 * 109.88211 * 218.23142 * 13 12 10 34 34 H 1.09002 * 109.51434 * 288.15762 * 19 17 15 35 35 H 1.08999 * 109.52130 * 48.32384 * 19 17 15 36 36 H 1.08996 * 109.45484 * 170.53523 * 20 19 17 37 37 H 1.09001 * 109.44326 * 50.58117 * 20 19 17 38 38 H 1.08999 * 109.58683 * 290.76186 * 21 20 19 39 39 H 1.09001 * 109.69422 * 170.41389 * 21 20 19 40 40 H 1.08004 * 125.86774 * 179.97438 * 24 23 22 41 41 H 1.07991 * 126.10164 * 179.97438 * 25 24 23 42 42 H 1.09003 * 110.34739 * 265.25398 * 27 14 13 43 43 H 1.09003 * 110.40561 * 142.92089 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 0.0036 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0056 11 1 3.5777 -3.2256 0.5824 12 6 4.3816 -2.9638 -1.4407 13 6 5.6528 -3.8241 -1.2814 14 7 6.3274 -3.3827 -0.0519 15 6 7.4660 -3.9014 0.4489 16 8 7.9844 -3.3985 1.4232 17 6 8.0949 -5.1065 -0.2017 18 1 7.3354 -5.6709 -0.7427 19 6 9.1955 -4.6562 -1.1715 20 6 10.0181 -5.8748 -1.6004 21 6 10.8408 -6.3826 -0.4114 22 7 9.9525 -6.5436 0.7435 23 7 10.1932 -7.2782 1.9066 24 6 9.1464 -7.1620 2.6860 25 6 8.2071 -6.3477 2.0408 26 6 8.7266 -5.9815 0.8527 27 6 5.5522 -2.2782 0.5429 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3620 -0.0033 30 1 3.5500 -3.5679 -1.8034 31 1 4.5640 -2.1211 -2.1076 32 1 5.3803 -4.8761 -1.1975 33 1 6.3088 -3.6786 -2.1397 34 1 8.7415 -4.1961 -2.0491 35 1 9.8448 -3.9346 -0.6758 36 1 10.6888 -5.5926 -2.4119 37 1 9.3475 -6.6636 -1.9412 38 1 11.6226 -5.6613 -0.1733 39 1 11.2931 -7.3424 -0.6609 40 1 9.0283 -7.6160 3.6588 41 1 7.2392 -6.0640 2.4267 42 1 5.9523 -1.3172 0.2195 43 1 5.5638 -2.3483 1.6306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019057188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:31 Heat of formation + Delta-G solvation = 38.963268 kcal Electronic energy + Delta-G solvation = -24997.709152 eV Core-core repulsion = 21464.883466 eV Total energy + Delta-G solvation = -3532.825687 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -42.68472 -41.01451 -38.83887 -37.30895 -36.03842 -33.90884 -33.33717 -31.31951 -31.29277 -29.89612 -28.97591 -26.32795 -25.03088 -23.98521 -23.28533 -22.20689 -21.75543 -20.69798 -19.73478 -19.68908 -18.38150 -17.89940 -17.31852 -16.72248 -16.27918 -16.17236 -15.70693 -15.49273 -15.33919 -15.17204 -14.74532 -14.62417 -14.42382 -14.39747 -13.91657 -13.54004 -13.45997 -13.40026 -13.19013 -13.11898 -12.65266 -12.52712 -12.27714 -12.18297 -12.10511 -12.02107 -11.81403 -11.63611 -11.57093 -10.98240 -10.96074 -10.20942 -9.71202 -9.53363 -9.34222 -8.02288 -5.37176 0.78632 1.35745 1.40115 1.42257 1.49278 1.61987 1.77110 1.98100 2.48686 3.20056 3.28018 3.43615 3.50640 3.54543 3.62502 3.79416 3.89610 4.03423 4.09546 4.13645 4.22543 4.30380 4.35118 4.45648 4.51200 4.62703 4.67660 4.69123 4.77587 4.82718 4.87579 4.93577 4.99939 5.13128 5.14413 5.20101 5.28211 5.41976 5.66889 5.77103 6.02319 6.21105 6.46832 6.69558 7.03576 7.06553 7.80454 7.98648 9.18672 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.003040 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.857620 B = 9207.982232 C = 9481.818944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.255 1.255 7 C -0.229 4.229 8 H 0.063 0.937 9 N -0.743 5.743 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.145 4.145 13 C 0.102 3.898 14 N -0.609 5.609 15 C 0.538 3.462 16 O -0.577 6.577 17 C -0.034 4.034 18 H 0.142 0.858 19 C -0.114 4.114 20 C -0.121 4.121 21 C 0.116 3.884 22 N -0.370 5.370 23 N -0.324 5.324 24 C 0.039 3.961 25 C -0.276 4.276 26 C 0.095 3.905 27 C 0.105 3.895 28 H 0.258 0.742 29 H 0.366 0.634 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.206 0.794 41 H 0.138 0.862 42 H 0.066 0.934 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.612 -14.626 -7.501 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.251 4.251 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.180 1.180 7 C -0.360 4.360 8 H 0.081 0.919 9 N -0.386 5.386 10 C 0.057 3.943 11 H 0.080 0.920 12 C -0.186 4.186 13 C -0.019 4.019 14 N -0.342 5.342 15 C 0.326 3.674 16 O -0.456 6.456 17 C -0.056 4.056 18 H 0.159 0.841 19 C -0.152 4.152 20 C -0.159 4.159 21 C -0.003 4.003 22 N -0.154 5.154 23 N -0.146 5.146 24 C -0.145 4.145 25 C -0.305 4.305 26 C -0.034 4.034 27 C -0.019 4.019 28 H 0.067 0.933 29 H 0.200 0.800 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.223 0.777 41 H 0.156 0.844 42 H 0.084 0.916 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.031 -14.999 -7.203 29.229 hybrid contribution -1.093 1.714 0.832 2.196 sum 22.938 -13.285 -6.370 27.262 Atomic orbital electron populations 1.69867 1.07095 1.26687 1.59527 1.25443 0.96006 1.01085 1.02614 0.85484 0.78570 0.79973 0.78194 1.20083 1.22642 1.17962 1.18984 0.82109 0.93588 1.41273 0.91884 1.42569 1.02626 1.03383 1.90029 1.21426 0.89427 0.87943 0.95467 0.92042 1.23196 0.96971 1.00051 0.98353 1.22333 0.93760 0.99717 0.86111 1.48443 1.23566 1.35343 1.26820 1.20283 0.79158 0.84689 0.83257 1.90722 1.62769 1.63139 1.29019 1.20152 0.99553 0.91861 0.94083 0.84090 1.21711 0.95685 0.98978 0.98864 1.21976 0.99906 0.97498 0.96520 1.22239 0.92196 1.04035 0.81833 1.48963 1.13146 1.37967 1.15283 1.77178 1.24086 1.18450 0.94838 1.24304 0.90815 0.98724 1.00687 1.21209 1.03745 1.08770 0.96825 1.20551 0.87904 0.97595 0.97333 1.22290 0.91202 0.90252 0.98149 0.93318 0.79996 0.89977 0.90765 0.88851 0.88031 0.86785 0.92257 0.85089 0.88985 0.89706 0.87371 0.77715 0.84416 0.91560 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.32 13.97 21.65 0.30 -61.01 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 3 Si 0.95 44.13 27.73 68.60 1.90 46.03 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 7 C -0.23 -12.34 10.46 84.03 0.88 -11.46 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 9 N -0.74 -32.34 5.07 -316.39 -1.60 -33.94 16 10 C 0.17 5.68 3.70 46.39 0.17 5.85 16 11 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 12 C -0.15 -3.74 6.65 31.78 0.21 -3.53 16 13 C 0.10 1.81 6.20 86.73 0.54 2.34 16 14 N -0.61 -14.95 3.33 -811.68 -2.70 -17.65 16 15 C 0.54 14.06 6.56 87.66 0.57 14.64 16 16 O -0.58 -20.75 16.47 -3.03 -0.05 -20.80 16 17 C -0.03 -0.60 2.54 -12.08 -0.03 -0.64 16 18 H 0.14 1.71 6.91 -2.39 -0.02 1.69 16 19 C -0.11 -1.33 5.28 30.79 0.16 -1.17 16 20 C -0.12 -0.79 5.93 30.73 0.18 -0.61 16 21 C 0.12 1.48 7.28 86.44 0.63 2.11 16 22 N -0.37 -8.23 4.04 -334.08 -1.35 -9.58 16 23 N -0.32 -8.48 12.62 -56.80 -0.72 -9.19 16 24 C 0.04 0.95 12.03 85.25 1.03 1.98 16 25 C -0.28 -7.21 10.00 21.91 0.22 -6.99 16 26 C 0.09 2.22 5.75 41.28 0.24 2.46 16 27 C 0.11 3.24 6.52 86.85 0.57 3.81 16 28 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 29 H 0.37 15.49 5.60 -92.70 -0.52 14.97 16 30 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.09 1.24 7.64 -2.39 -0.02 1.22 16 33 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.09 0.46 8.12 -2.39 -0.02 0.44 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.21 3.59 8.06 -2.91 -0.02 3.56 16 41 H 0.14 3.63 8.06 -2.92 -0.02 3.61 16 42 H 0.07 2.05 8.00 -2.39 -0.02 2.03 16 43 H 0.06 2.10 8.09 -2.39 -0.02 2.08 16 Total: -1.00 -78.58 348.35 2.05 -76.53 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.44 Total: 23.76 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.83 Total: 5.85 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -6.07 Total: -131.38 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.05 Total: -20.80 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Total: -78.58 2.05 -76.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019057188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.494 kcal (2) G-P(sol) polarization free energy of solvation -78.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds