Wall clock time and date at job start Fri Apr 10 2020 17:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30862 * 125.42051 * 2 1 4 4 C 1.33313 * 109.68300 * 180.02562 * 3 2 1 5 5 C 1.36664 * 107.79328 * 0.02562 * 4 3 2 6 6 C 1.46765 * 126.84823 * 180.02562 * 5 4 3 7 7 O 1.21674 * 119.99845 * 0.02562 * 6 5 4 8 8 N 1.34768 * 119.99861 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00053 * 180.02562 * 8 6 5 10 10 C 1.53140 * 109.43723 * 119.86303 * 9 8 6 11 11 C 1.55652 * 108.76433 * 65.85859 * 10 9 8 12 12 H 1.09007 * 112.43300 * 187.56063 * 11 10 9 13 13 C 1.54602 * 108.45292 * 312.85239 * 11 10 9 14 14 C 1.53797 * 104.85033 * 87.89808 * 13 11 10 15 15 C 1.54610 * 104.84597 * 0.02562 * 14 13 11 16 16 H 1.09002 * 112.18987 * 146.68618 * 15 14 13 17 17 C 1.53152 * 109.43723 * 240.08268 * 9 8 6 18 18 N 1.48289 * 104.26183 * 25.02731 * 15 14 13 19 19 C 1.36934 * 128.21270 * 138.35985 * 18 15 14 20 20 H 1.07996 * 119.99988 * 344.94384 * 19 18 15 21 21 C 1.38819 * 120.00226 * 164.93986 * 19 18 15 22 22 N 1.31624 * 119.99558 * 351.64728 * 21 19 18 23 23 Si 1.86799 * 120.00331 * 171.65086 * 21 19 18 24 24 H 1.48495 * 109.46937 * 270.00307 * 23 21 19 25 25 H 1.48503 * 109.46981 * 29.99912 * 23 21 19 26 26 H 1.48493 * 109.47290 * 150.00059 * 23 21 19 27 27 N 1.34502 * 125.41692 * 180.32127 * 2 1 3 28 28 H 0.96993 * 126.46914 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.46697 * 89.97358 * 1 2 3 30 30 H 1.09000 * 109.47306 * 209.97625 * 1 2 3 31 31 H 1.08995 * 109.46632 * 329.97541 * 1 2 3 32 32 H 1.08010 * 126.10351 * 179.97438 * 4 3 2 33 33 H 0.97006 * 120.00485 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.39846 * 359.96633 * 9 8 6 35 35 H 1.09007 * 109.56989 * 185.99862 * 10 9 8 36 36 H 1.09006 * 109.56843 * 306.35200 * 10 9 8 37 37 H 1.09001 * 110.38467 * 206.60287 * 13 11 10 38 38 H 1.08999 * 110.38179 * 328.85503 * 13 11 10 39 39 H 1.08998 * 110.43538 * 241.09901 * 14 13 11 40 40 H 1.09003 * 110.23868 * 118.79670 * 14 13 11 41 41 H 1.08999 * 109.57368 * 173.99967 * 17 9 8 42 42 H 1.09000 * 109.66766 * 53.70044 * 17 9 8 43 43 H 0.97001 * 119.99510 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0664 0.0000 4 6 3.5486 0.7048 -0.0006 5 6 3.5976 -0.6609 -0.0015 6 6 4.8029 -1.4984 -0.0019 7 8 5.9038 -0.9801 -0.0008 8 7 4.6903 -2.8413 -0.0034 9 6 5.8933 -3.6773 -0.0031 10 6 5.9004 -4.5599 1.2483 11 6 4.7138 -5.5634 1.1600 12 1 4.5819 -6.1336 2.0796 13 6 3.4422 -4.7832 0.7544 14 6 3.4566 -4.7781 -0.7835 15 6 4.7354 -5.5564 -1.1703 16 1 4.6100 -6.1211 -2.0941 17 6 5.9020 -4.5584 -1.2558 18 7 4.9933 -6.4372 -0.0055 19 6 5.3900 -7.7478 -0.0061 20 1 5.3200 -8.3328 -0.9112 21 6 5.8823 -8.3245 1.1568 22 7 6.1225 -7.5755 2.2121 23 14 6.2037 -10.1634 1.2238 24 1 4.9798 -10.8631 1.6902 25 1 6.5674 -10.6520 -0.1306 26 1 7.3194 -10.4369 2.1648 27 7 2.2865 -1.0961 -0.0061 28 1 1.9849 -2.0180 -0.0117 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3632 0.8897 0.5142 32 1 4.3979 1.3722 -0.0011 33 1 3.8126 -3.2545 -0.0046 34 1 6.7773 -3.0396 -0.0023 35 1 6.8430 -5.1043 1.3059 36 1 5.7818 -3.9371 2.1350 37 1 2.5511 -5.2924 1.1214 38 1 3.4826 -3.7646 1.1403 39 1 3.5050 -3.7565 -1.1603 40 1 2.5726 -5.2850 -1.1706 41 1 6.8446 -5.1027 -1.3129 42 1 5.7856 -3.9358 -2.1430 43 1 6.4661 -7.9785 3.0248 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021212019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:44 Heat of formation + Delta-G solvation = 114.912022 kcal Electronic energy + Delta-G solvation = -26220.425025 eV Core-core repulsion = 22690.892723 eV Total energy + Delta-G solvation = -3529.532302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.37868 -40.92667 -38.21145 -34.37848 -32.93569 -32.25484 -32.11831 -31.20865 -30.25519 -29.17052 -27.47842 -24.82271 -23.48876 -23.11579 -21.55469 -20.81246 -20.45835 -19.74057 -19.60689 -18.41727 -17.07357 -16.21704 -15.76596 -15.26056 -14.92133 -14.35077 -14.32105 -14.03445 -13.91307 -13.56323 -13.21712 -13.04975 -12.96052 -12.83652 -12.72072 -12.23870 -12.20201 -11.77248 -11.70423 -11.08050 -10.99623 -10.75638 -10.55655 -10.46111 -10.38276 -10.31368 -10.14427 -9.93258 -9.66553 -9.64695 -9.48466 -8.74479 -8.64483 -8.29515 -6.93565 -5.87410 -3.23600 1.26598 2.70019 2.73148 3.31709 3.38137 3.39703 3.46212 3.48998 4.17221 4.36750 4.68661 4.94897 4.99297 5.13270 5.18042 5.21315 5.25771 5.39009 5.49406 5.50772 5.58352 5.64355 5.69192 5.72575 5.80559 5.91089 5.99850 6.14856 6.33621 6.39295 6.42840 6.46870 6.52341 6.64269 6.77352 6.88760 6.98284 7.03207 7.38783 7.42884 7.62901 7.66439 7.84259 8.10676 8.37961 9.01896 9.64027 10.40938 11.24765 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.003934 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.578533 B = 7115.557859 C = 7524.729345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.231 3.769 3 N -0.496 5.496 4 C 0.064 3.936 5 C -0.081 4.081 6 C 0.575 3.425 7 O -0.539 6.539 8 N -0.733 5.733 9 C 0.142 3.858 10 C -0.124 4.124 11 C 0.181 3.819 12 H 0.115 0.885 13 C -0.173 4.173 14 C -0.162 4.162 15 C 0.150 3.850 16 H 0.069 0.931 17 C -0.138 4.138 18 N -0.583 5.583 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.002 4.002 22 N -0.911 5.911 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 N -0.553 5.553 28 H 0.420 0.580 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.183 0.817 33 H 0.420 0.580 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 10.490 -4.156 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.032 4.032 3 N -0.216 5.216 4 C -0.089 4.089 5 C -0.197 4.197 6 C 0.361 3.639 7 O -0.417 6.417 8 N -0.404 5.404 9 C 0.039 3.961 10 C -0.164 4.164 11 C 0.074 3.926 12 H 0.133 0.867 13 C -0.212 4.212 14 C -0.202 4.202 15 C 0.042 3.958 16 H 0.087 0.913 17 C -0.178 4.178 18 N -0.303 5.303 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.557 5.557 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.206 1.206 26 H -0.217 1.217 27 N -0.159 5.159 28 H 0.258 0.742 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.201 0.799 33 H 0.278 0.722 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.018 11.373 -4.008 15.677 hybrid contribution 0.089 -2.344 0.076 2.347 sum -9.930 9.028 -3.932 13.985 Atomic orbital electron populations 1.20302 0.84327 1.04565 1.04018 1.23445 0.95857 0.81599 1.02343 1.70177 1.02176 1.28188 1.21094 1.22623 0.94641 0.91331 1.00351 1.21418 0.83797 0.96227 1.18301 1.17143 0.86710 0.82963 0.77114 1.90797 1.25728 1.73896 1.51243 1.48848 1.13297 1.05185 1.73055 1.21159 0.87045 0.91160 0.96780 1.22715 1.03184 0.96792 0.93717 1.21920 0.87618 0.88908 0.94137 0.86690 1.23293 1.02563 1.00260 0.95106 1.23180 1.00738 0.99871 0.96378 1.21516 0.90954 0.90599 0.92709 0.91296 1.22511 1.01717 0.97811 0.95772 1.45168 1.77873 1.07852 0.99449 1.18989 1.35379 0.84154 0.97019 0.90628 1.24847 0.99909 0.98220 0.96982 1.69839 1.49129 1.33484 1.03250 0.86137 0.77481 0.84829 0.77385 1.21632 1.20648 1.21680 1.43305 1.06297 1.10210 1.56050 0.74154 0.89642 0.90352 0.88693 0.79950 0.72187 0.89560 0.89413 0.93857 0.91903 0.91296 0.91106 0.91841 0.90509 0.93310 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.23 2.47 8.12 -155.60 -1.26 1.20 16 3 N -0.50 -6.63 11.20 -10.58 -0.12 -6.75 16 4 C 0.06 0.90 11.66 -17.48 -0.20 0.69 16 5 C -0.08 -1.15 7.08 -82.14 -0.58 -1.73 16 6 C 0.57 9.50 7.79 -12.82 -0.10 9.40 16 7 O -0.54 -10.59 16.23 5.21 0.08 -10.51 16 8 N -0.73 -11.53 2.85 -54.95 -0.16 -11.69 16 9 C 0.14 2.58 3.15 -67.78 -0.21 2.37 16 10 C -0.12 -2.53 5.50 -25.25 -0.14 -2.67 16 11 C 0.18 3.83 3.23 -64.67 -0.21 3.62 16 12 H 0.12 2.83 6.29 -51.92 -0.33 2.51 16 13 C -0.17 -2.81 5.75 -25.47 -0.15 -2.96 16 14 C -0.16 -2.45 5.75 -25.47 -0.15 -2.60 16 15 C 0.15 2.80 4.28 -65.70 -0.28 2.51 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 17 C -0.14 -2.47 5.51 -26.26 -0.14 -2.61 16 18 N -0.58 -13.21 2.80 -151.55 -0.42 -13.63 16 19 C -0.23 -5.81 10.38 -15.06 -0.16 -5.97 16 20 H 0.08 1.90 7.84 -52.49 -0.41 1.49 16 21 C 0.00 -0.06 5.43 -17.43 -0.09 -0.15 16 22 N -0.91 -24.54 10.61 55.49 0.59 -23.95 16 23 Si 0.91 20.88 29.56 -169.99 -5.03 15.85 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 N -0.55 -5.98 6.07 -7.01 -0.04 -6.02 16 28 H 0.42 3.55 8.32 -40.82 -0.34 3.21 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.18 2.35 8.06 -52.48 -0.42 1.93 16 33 H 0.42 5.87 1.14 -58.26 -0.07 5.80 16 34 H 0.09 1.67 6.89 -51.93 -0.36 1.31 16 35 H 0.09 2.07 8.05 -51.93 -0.42 1.65 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.02 5.35 -51.93 -0.28 0.74 16 39 H 0.07 0.96 5.31 -51.93 -0.28 0.68 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -30.51 333.60 -9.20 -39.71 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.84 Total: 10.91 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -3.30 Total: 1.05 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.15 Total: -62.04 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.51 -9.20 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021212019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.627 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds