Wall clock time and date at job start Fri Apr 10 2020 17:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99951 * 2 1 4 4 H 1.48499 * 109.47078 * 239.99733 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47205 * 119.99803 * 3 2 1 7 7 C 1.38813 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99576 * 185.60492 * 7 2 1 9 9 N 1.36935 * 120.00346 * 5.59275 * 7 2 1 10 10 C 1.46887 * 120.39180 * 214.55018 * 9 7 2 11 11 C 1.53319 * 109.09927 * 232.56481 * 10 9 7 12 12 C 1.52899 * 109.03529 * 306.06666 * 11 10 9 13 13 H 1.09004 * 109.53247 * 302.12126 * 12 11 10 14 14 C 1.53268 * 109.15690 * 62.04728 * 12 11 10 15 15 H 1.09007 * 109.46538 * 56.43350 * 14 12 11 16 16 C 1.52851 * 109.16052 * 176.00934 * 14 12 11 17 17 C 1.53150 * 109.46149 * 298.52688 * 16 14 12 18 18 C 1.53130 * 109.60891 * 60.74539 * 17 16 14 19 19 N 1.46715 * 110.28338 * 181.50573 * 12 11 10 20 20 C 1.34781 * 120.84136 * 6.06563 * 19 12 11 21 21 O 1.21567 * 119.99669 * 353.47380 * 20 19 12 22 22 C 1.47714 * 120.00192 * 173.48052 * 20 19 12 23 23 C 1.41500 * 126.51796 * 173.05297 * 22 20 19 24 24 C 1.35358 * 105.50189 * 179.97438 * 23 22 20 25 25 N 1.35032 * 107.23302 * 0.02562 * 24 23 22 26 26 H 0.97002 * 124.88950 * 180.02562 * 25 24 23 27 27 N 1.28471 * 110.22729 * 359.72061 * 25 24 23 28 28 C 1.47074 * 120.47199 * 34.64258 * 9 7 2 29 29 H 0.96996 * 119.99718 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.44626 * 112.73623 * 10 9 7 31 31 H 1.09000 * 109.63209 * 352.49870 * 10 9 7 32 32 H 1.08997 * 109.55760 * 186.17221 * 11 10 9 33 33 H 1.09000 * 109.55938 * 65.95741 * 11 10 9 34 34 H 1.08996 * 109.49746 * 178.47758 * 16 14 12 35 35 H 1.08997 * 109.35168 * 58.49042 * 16 14 12 36 36 H 1.08998 * 109.44868 * 300.70237 * 17 16 14 37 37 H 1.08997 * 109.42544 * 180.76822 * 17 16 14 38 38 H 1.09006 * 109.54087 * 186.13270 * 18 17 16 39 39 H 1.08998 * 109.54483 * 65.86900 * 18 17 16 40 40 H 1.08004 * 127.24605 * 0.02562 * 23 22 20 41 41 H 1.07999 * 126.38662 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.69146 * 6.94904 * 28 9 7 43 43 H 1.08995 * 109.72504 * 246.38277 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0864 -1.2043 0.0919 9 7 1.3305 -2.3853 -0.1145 10 6 1.8026 -3.5851 0.5893 11 6 1.9346 -4.7363 -0.4146 12 6 0.6074 -4.9077 -1.1542 13 1 -0.1890 -5.0973 -0.4345 14 6 0.2978 -3.6259 -1.9355 15 1 1.1253 -3.4022 -2.6089 16 6 -0.9769 -3.8324 -2.7533 17 6 -0.7613 -4.9700 -3.7558 18 6 -0.4428 -6.2649 -3.0029 19 7 0.6922 -6.0275 -2.0983 20 6 1.7829 -6.8185 -2.1359 21 8 2.7594 -6.5394 -1.4678 22 6 1.7917 -8.0243 -2.9891 23 6 2.8979 -8.8703 -3.2398 24 6 2.4353 -9.8343 -4.0698 25 7 1.1302 -9.5734 -4.2978 26 1 0.5476 -10.1074 -4.8603 27 7 0.7693 -8.5198 -3.6574 28 6 0.1201 -2.4723 -0.9454 29 1 -0.4849 0.8400 -0.0004 30 1 1.0853 -3.8573 1.3636 31 1 2.7729 -3.3850 1.0438 32 1 2.1783 -5.6568 0.1157 33 1 2.7242 -4.5075 -1.1304 34 1 -1.2172 -2.9149 -3.2904 35 1 -1.7981 -4.0880 -2.0838 36 1 0.0697 -4.7200 -4.4153 37 1 -1.6659 -5.1077 -4.3479 38 1 -0.1830 -7.0470 -3.7164 39 1 -1.3129 -6.5729 -2.4231 40 1 3.9000 -8.7687 -2.8501 41 1 3.0040 -10.6586 -4.4743 42 1 -0.0192 -1.5386 -1.4904 43 1 -0.7474 -2.6613 -0.3131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021530333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:10 Heat of formation + Delta-G solvation = 86.357277 kcal Electronic energy + Delta-G solvation = -26057.277283 eV Core-core repulsion = 22526.506755 eV Total energy + Delta-G solvation = -3530.770528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.80935 -40.10014 -37.47114 -35.69406 -32.88717 -32.67795 -31.75359 -30.90528 -29.98997 -29.01541 -25.41120 -25.39062 -23.26405 -22.36404 -22.31609 -21.59065 -19.98487 -19.42085 -19.00932 -18.25300 -16.61341 -16.39332 -15.88994 -15.55175 -14.82650 -14.61957 -14.23044 -13.98857 -13.79023 -13.72772 -13.34327 -13.31400 -12.97343 -12.57094 -12.27750 -12.13132 -11.99667 -11.42396 -11.36164 -10.87835 -10.79317 -10.68246 -10.57217 -10.32957 -10.18619 -9.96343 -9.79966 -9.70939 -9.49279 -9.37881 -9.29407 -8.86383 -8.37627 -8.07687 -6.42608 -5.69102 -3.19492 1.50380 2.01645 2.64000 3.29845 3.44740 3.48641 3.50697 3.55986 4.34107 4.56793 4.63295 4.93053 5.16924 5.26432 5.35067 5.45010 5.50380 5.56038 5.56706 5.66750 5.75340 5.89116 5.95160 6.04484 6.14029 6.23634 6.32797 6.40591 6.49964 6.53146 6.58857 6.69615 6.75946 6.83178 6.92294 7.06622 7.17058 7.33942 7.47790 7.64447 7.79041 7.81410 7.89222 8.48982 8.61279 9.33928 9.94367 10.54264 11.38630 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.003903 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.131059 B = 7173.112109 C = 7758.225847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.250 4.250 8 H 0.062 0.938 9 N -0.594 5.594 10 C 0.139 3.861 11 C -0.117 4.117 12 C 0.157 3.843 13 H 0.065 0.935 14 C -0.120 4.120 15 H 0.065 0.935 16 C -0.112 4.112 17 C -0.131 4.131 18 C 0.089 3.911 19 N -0.592 5.592 20 C 0.593 3.407 21 O -0.522 6.522 22 C -0.001 4.001 23 C -0.181 4.181 24 C -0.016 4.016 25 N -0.391 5.391 26 H 0.443 0.557 27 N -0.263 5.263 28 C 0.185 3.815 29 H 0.253 0.747 30 H 0.013 0.987 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.089 0.911 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -20.332 -10.933 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.079 0.921 9 N -0.316 5.316 10 C 0.013 3.987 11 C -0.156 4.156 12 C 0.055 3.945 13 H 0.083 0.917 14 C -0.142 4.142 15 H 0.084 0.916 16 C -0.151 4.151 17 C -0.170 4.170 18 C -0.035 4.035 19 N -0.324 5.324 20 C 0.379 3.621 21 O -0.396 6.396 22 C -0.162 4.162 23 C -0.209 4.209 24 C -0.161 4.161 25 N -0.104 5.104 26 H 0.287 0.713 27 N -0.099 5.099 28 C 0.059 3.941 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.180 0.820 41 H 0.200 0.800 42 H 0.108 0.892 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.930 -19.813 -10.727 22.613 hybrid contribution 0.797 0.366 -0.293 0.924 sum -1.133 -19.447 -11.020 22.381 Atomic orbital electron populations 1.69935 1.05233 1.25418 1.54580 1.25247 0.95462 0.98266 1.00282 0.86354 0.78833 0.83310 0.78129 1.21017 1.21666 1.20863 1.19149 0.90198 0.83558 1.45135 0.92065 1.44031 1.29555 1.06072 1.51987 1.21148 0.97619 0.87233 0.92732 1.22474 0.95040 0.98894 0.99200 1.21356 0.99324 0.84295 0.89475 0.91672 1.22289 0.96838 0.96553 0.98490 0.91646 1.21498 0.98351 0.97737 0.97468 1.21909 1.01249 0.95519 0.98298 1.22365 0.88703 0.98788 0.93603 1.48136 1.16860 1.30068 1.37308 1.17071 0.83047 0.80957 0.81049 1.90866 1.33906 1.71835 1.43040 1.22376 0.91481 0.99617 1.02731 1.21831 1.00809 0.95618 1.02626 1.22920 0.86291 1.03161 1.03679 1.43551 1.09579 1.20656 1.36633 0.71264 1.73453 1.25988 1.00245 1.10187 1.20756 0.88046 0.95020 0.90286 0.93649 0.96885 0.92639 0.91070 0.91160 0.91751 0.92221 0.92103 0.91440 0.86405 0.92061 0.81971 0.79976 0.89247 0.96361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.67 11.01 55.49 0.61 -26.06 16 2 C 0.01 0.16 5.14 -17.43 -0.09 0.08 16 3 Si 0.90 22.26 29.56 -169.99 -5.02 17.24 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -7.16 9.54 -15.06 -0.14 -7.30 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.32 16 9 N -0.59 -15.67 2.99 -172.23 -0.51 -16.18 16 10 C 0.14 3.23 6.51 -3.67 -0.02 3.20 16 11 C -0.12 -2.44 3.79 -26.62 -0.10 -2.54 16 12 C 0.16 3.00 2.63 -67.73 -0.18 2.83 16 13 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.12 -2.42 2.21 -90.53 -0.20 -2.61 16 15 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 16 C -0.11 -1.84 5.24 -26.73 -0.14 -1.98 16 17 C -0.13 -1.79 6.07 -26.59 -0.16 -1.95 16 18 C 0.09 1.22 6.12 -3.66 -0.02 1.20 16 19 N -0.59 -9.93 2.97 -166.46 -0.50 -10.42 16 20 C 0.59 10.23 7.62 -12.39 -0.09 10.13 16 21 O -0.52 -10.35 12.48 5.31 0.07 -10.28 16 22 C 0.00 -0.02 6.83 -82.76 -0.57 -0.58 16 23 C -0.18 -2.01 10.81 -39.37 -0.43 -2.44 16 24 C -0.02 -0.11 12.02 -17.17 -0.21 -0.32 16 25 N -0.39 -2.87 6.83 30.47 0.21 -2.66 16 26 H 0.44 1.42 8.96 -190.44 -1.71 -0.28 16 27 N -0.26 -2.99 8.73 33.42 0.29 -2.70 16 28 C 0.19 4.52 4.56 -3.70 -0.02 4.51 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 32 H 0.07 1.47 6.47 -51.93 -0.34 1.13 16 33 H 0.07 1.61 7.12 -51.93 -0.37 1.24 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.12 1.50 4.20 -66.75 -0.28 1.22 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 41 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.09 2.43 6.22 -51.93 -0.32 2.11 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -33.79 331.42 -9.86 -43.65 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.62 Total: 0.21 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.37 Total: 2.22 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.10 Total: -58.02 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.79 -9.86 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021530333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.005 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds