Wall clock time and date at job start Fri Apr 10 2020 17:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99951 * 2 1 4 4 H 1.48499 * 109.47078 * 239.99733 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47205 * 119.99803 * 3 2 1 7 7 C 1.38813 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99576 * 185.60492 * 7 2 1 9 9 N 1.36935 * 120.00346 * 5.59275 * 7 2 1 10 10 C 1.46887 * 120.39180 * 214.55018 * 9 7 2 11 11 C 1.53319 * 109.09927 * 232.56481 * 10 9 7 12 12 C 1.52899 * 109.03529 * 306.06666 * 11 10 9 13 13 H 1.09004 * 109.53247 * 302.12126 * 12 11 10 14 14 C 1.53268 * 109.15690 * 62.04728 * 12 11 10 15 15 H 1.09007 * 109.46538 * 56.43350 * 14 12 11 16 16 C 1.52851 * 109.16052 * 176.00934 * 14 12 11 17 17 C 1.53150 * 109.46149 * 298.52688 * 16 14 12 18 18 C 1.53130 * 109.60891 * 60.74539 * 17 16 14 19 19 N 1.46715 * 110.28338 * 181.50573 * 12 11 10 20 20 C 1.34781 * 120.84136 * 6.06563 * 19 12 11 21 21 O 1.21567 * 119.99669 * 353.47380 * 20 19 12 22 22 C 1.47714 * 120.00192 * 173.48052 * 20 19 12 23 23 C 1.41500 * 126.51796 * 173.05297 * 22 20 19 24 24 C 1.35358 * 105.50189 * 179.97438 * 23 22 20 25 25 N 1.35032 * 107.23302 * 0.02562 * 24 23 22 26 26 H 0.97002 * 124.88950 * 180.02562 * 25 24 23 27 27 N 1.28471 * 110.22729 * 359.72061 * 25 24 23 28 28 C 1.47074 * 120.47199 * 34.64258 * 9 7 2 29 29 H 0.96996 * 119.99718 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.44626 * 112.73623 * 10 9 7 31 31 H 1.09000 * 109.63209 * 352.49870 * 10 9 7 32 32 H 1.08997 * 109.55760 * 186.17221 * 11 10 9 33 33 H 1.09000 * 109.55938 * 65.95741 * 11 10 9 34 34 H 1.08996 * 109.49746 * 178.47758 * 16 14 12 35 35 H 1.08997 * 109.35168 * 58.49042 * 16 14 12 36 36 H 1.08998 * 109.44868 * 300.70237 * 17 16 14 37 37 H 1.08997 * 109.42544 * 180.76822 * 17 16 14 38 38 H 1.09006 * 109.54087 * 186.13270 * 18 17 16 39 39 H 1.08998 * 109.54483 * 65.86900 * 18 17 16 40 40 H 1.08004 * 127.24605 * 0.02562 * 23 22 20 41 41 H 1.07999 * 126.38662 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.69146 * 6.94904 * 28 9 7 43 43 H 1.08995 * 109.72504 * 246.38277 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0864 -1.2043 0.0919 9 7 1.3305 -2.3853 -0.1145 10 6 1.8026 -3.5851 0.5893 11 6 1.9346 -4.7363 -0.4146 12 6 0.6074 -4.9077 -1.1542 13 1 -0.1890 -5.0973 -0.4345 14 6 0.2978 -3.6259 -1.9355 15 1 1.1253 -3.4022 -2.6089 16 6 -0.9769 -3.8324 -2.7533 17 6 -0.7613 -4.9700 -3.7558 18 6 -0.4428 -6.2649 -3.0029 19 7 0.6922 -6.0275 -2.0983 20 6 1.7829 -6.8185 -2.1359 21 8 2.7594 -6.5394 -1.4678 22 6 1.7917 -8.0243 -2.9891 23 6 2.8979 -8.8703 -3.2398 24 6 2.4353 -9.8343 -4.0698 25 7 1.1302 -9.5734 -4.2978 26 1 0.5476 -10.1074 -4.8603 27 7 0.7693 -8.5198 -3.6574 28 6 0.1201 -2.4723 -0.9454 29 1 -0.4849 0.8400 -0.0004 30 1 1.0853 -3.8573 1.3636 31 1 2.7729 -3.3850 1.0438 32 1 2.1783 -5.6568 0.1157 33 1 2.7242 -4.5075 -1.1304 34 1 -1.2172 -2.9149 -3.2904 35 1 -1.7981 -4.0880 -2.0838 36 1 0.0697 -4.7200 -4.4153 37 1 -1.6659 -5.1077 -4.3479 38 1 -0.1830 -7.0470 -3.7164 39 1 -1.3129 -6.5729 -2.4231 40 1 3.9000 -8.7687 -2.8501 41 1 3.0040 -10.6586 -4.4743 42 1 -0.0192 -1.5386 -1.4904 43 1 -0.7474 -2.6613 -0.3131 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021530333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:09 Heat of formation + Delta-G solvation = 63.788076 kcal Electronic energy + Delta-G solvation = -26058.255957 eV Core-core repulsion = 22526.506755 eV Total energy + Delta-G solvation = -3531.749202 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.59450 -41.51251 -39.01547 -37.33738 -34.60389 -34.18221 -32.85462 -31.96259 -31.44200 -30.74155 -27.31052 -26.71899 -24.75433 -23.89958 -23.67626 -22.53504 -21.40142 -21.12271 -20.11007 -19.15789 -18.69835 -17.56385 -17.07624 -16.84582 -16.66708 -16.05063 -15.53524 -15.49046 -15.28255 -15.09757 -14.84847 -14.59690 -14.14089 -13.96726 -13.84862 -13.69255 -13.50204 -13.16824 -12.75899 -12.72140 -12.64117 -12.41444 -12.15988 -12.04770 -11.84485 -11.67466 -11.56395 -11.20324 -10.95189 -10.58544 -10.36198 -10.34978 -10.09089 -9.49072 -8.55105 -7.86604 -5.42132 0.54257 1.27958 1.45402 1.47986 1.54824 1.82853 2.26723 2.39218 2.49865 3.27619 3.37872 3.62950 3.79784 3.88367 4.02311 4.08876 4.14365 4.24197 4.31241 4.38860 4.49114 4.63888 4.73471 4.76094 4.81429 4.87375 4.89207 4.96278 5.01623 5.04155 5.09268 5.17341 5.29996 5.36860 5.40692 5.45816 5.53373 5.63568 5.71619 5.78421 6.23356 6.42904 6.49207 6.90744 7.16670 7.21396 7.83527 8.38613 9.18140 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026965 B = 0.003903 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.131059 B = 7173.112109 C = 7758.225847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.042 4.042 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.273 4.273 8 H 0.056 0.944 9 N -0.613 5.613 10 C 0.138 3.862 11 C -0.095 4.095 12 C 0.163 3.837 13 H 0.067 0.933 14 C -0.107 4.107 15 H 0.040 0.960 16 C -0.108 4.108 17 C -0.122 4.122 18 C 0.088 3.912 19 N -0.595 5.595 20 C 0.585 3.415 21 O -0.562 6.562 22 C -0.035 4.035 23 C -0.212 4.212 24 C 0.021 3.979 25 N -0.367 5.367 26 H 0.465 0.535 27 N -0.269 5.269 28 C 0.196 3.804 29 H 0.252 0.748 30 H 0.015 0.985 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.158 0.842 41 H 0.234 0.766 42 H 0.058 0.942 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -22.902 -13.080 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.403 4.403 8 H 0.074 0.926 9 N -0.337 5.337 10 C 0.012 3.988 11 C -0.135 4.135 12 C 0.060 3.940 13 H 0.085 0.915 14 C -0.128 4.128 15 H 0.058 0.942 16 C -0.147 4.147 17 C -0.160 4.160 18 C -0.034 4.034 19 N -0.326 5.326 20 C 0.373 3.627 21 O -0.440 6.440 22 C -0.194 4.194 23 C -0.240 4.240 24 C -0.124 4.124 25 N -0.083 5.083 26 H 0.314 0.686 27 N -0.107 5.107 28 C 0.070 3.930 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.175 0.825 41 H 0.251 0.749 42 H 0.076 0.924 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -2.582 -22.423 -12.906 26.000 hybrid contribution 1.000 1.041 0.336 1.482 sum -1.582 -21.382 -12.570 24.854 Atomic orbital electron populations 1.70099 1.06488 1.26007 1.55078 1.25990 0.96355 1.01399 1.00001 0.85306 0.77603 0.78985 0.78283 1.20458 1.21320 1.20173 1.19419 0.90364 0.84913 1.45631 0.92622 1.44298 1.29887 1.06421 1.53067 1.21227 0.97145 0.87130 0.93288 1.22187 0.95472 0.97695 0.98112 1.21055 0.97984 0.85053 0.89871 0.91484 1.22016 0.98111 0.95339 0.97361 0.94160 1.21473 0.96235 0.99145 0.97807 1.21874 1.02653 0.94007 0.97494 1.22616 0.87988 0.99277 0.93553 1.48156 1.17976 1.29119 1.37339 1.17590 0.82293 0.81829 0.80970 1.90820 1.35183 1.73070 1.44893 1.21892 0.93506 0.99525 1.04487 1.22021 1.00477 0.96851 1.04615 1.23518 0.85707 1.02411 1.00790 1.43651 1.10244 1.19289 1.35140 0.68639 1.73242 1.25431 1.01580 1.10437 1.20532 0.86897 0.95295 0.90282 0.93856 0.96692 0.93236 0.90713 0.93648 0.91951 0.91317 0.92993 0.87732 0.84736 0.90694 0.82468 0.74943 0.92406 0.97941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 11.01 21.65 0.24 -56.14 16 2 C -0.04 -2.42 5.14 84.86 0.44 -1.99 16 3 Si 0.97 46.70 29.56 68.60 2.03 48.72 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.27 -16.22 9.54 84.03 0.80 -15.41 16 8 H 0.06 3.29 7.83 -2.91 -0.02 3.26 16 9 N -0.61 -33.91 2.99 -698.82 -2.09 -36.00 16 10 C 0.14 6.71 6.51 86.41 0.56 7.27 16 11 C -0.10 -4.18 3.79 30.67 0.12 -4.07 16 12 C 0.16 6.40 2.63 45.01 0.12 6.52 16 13 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 14 C -0.11 -4.44 2.21 -10.73 -0.02 -4.46 16 15 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 16 C -0.11 -3.49 5.24 30.59 0.16 -3.33 16 17 C -0.12 -3.07 6.07 30.69 0.19 -2.88 16 18 C 0.09 2.23 6.12 86.31 0.53 2.75 16 19 N -0.59 -19.87 2.97 -798.84 -2.38 -22.24 16 20 C 0.59 20.41 7.62 86.75 0.66 21.07 16 21 O -0.56 -23.23 12.48 -3.93 -0.05 -23.28 16 22 C -0.04 -0.94 6.83 42.46 0.29 -0.65 16 23 C -0.21 -4.33 10.81 22.41 0.24 -4.08 16 24 C 0.02 0.21 12.02 83.54 1.00 1.21 16 25 N -0.37 -3.78 6.83 -57.52 -0.39 -4.17 16 26 H 0.46 0.59 8.96 -219.99 -1.97 -1.38 16 27 N -0.27 -5.34 8.73 -48.17 -0.42 -5.76 16 28 C 0.20 10.03 4.56 86.29 0.39 10.42 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.05 2.40 7.93 -2.39 -0.02 2.38 16 32 H 0.07 3.22 6.47 -2.39 -0.02 3.20 16 33 H 0.04 2.20 7.12 -2.39 -0.02 2.19 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.14 3.05 4.20 -21.56 -0.09 2.96 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.23 -0.13 8.06 -2.91 -0.02 -0.16 16 42 H 0.06 3.31 6.22 -2.38 -0.01 3.29 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -78.08 331.42 1.39 -76.69 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -1.02 Total: 9.79 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 5.48 Total: 12.38 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -5.04 Total: -124.31 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.28 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -78.08 1.39 -76.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021530333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.476 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds