Wall clock time and date at job start Fri Apr 10 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47336 * 91.37903 * 3 2 1 5 5 H 1.48500 * 109.46951 * 211.37758 * 3 2 1 6 6 H 1.48497 * 109.47237 * 331.37649 * 3 2 1 7 7 C 1.38813 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99226 * 20.34937 * 7 2 1 9 9 N 1.36928 * 120.00519 * 200.35213 * 7 2 1 10 10 C 1.46976 * 120.77450 * 210.12446 * 9 7 2 11 11 C 1.52623 * 108.87329 * 234.26604 * 10 9 7 12 12 C 1.53160 * 109.65019 * 304.88595 * 11 10 9 13 13 H 1.09002 * 110.65062 * 298.89734 * 12 11 10 14 14 C 1.53143 * 109.59261 * 60.44820 * 12 11 10 15 15 H 1.09004 * 109.25095 * 180.40410 * 14 12 11 16 16 C 1.52850 * 108.71546 * 61.25947 * 14 12 11 17 17 C 1.53126 * 109.34410 * 62.44140 * 16 14 12 18 18 C 1.53142 * 109.47576 * 299.35131 * 17 16 14 19 19 N 1.46945 * 109.02805 * 54.06764 * 18 17 16 20 20 C 1.34784 * 120.83925 * 126.01067 * 19 18 17 21 21 O 1.21564 * 120.00230 * 352.92603 * 20 19 18 22 22 C 1.47710 * 119.99627 * 172.92570 * 20 19 18 23 23 C 1.41502 * 126.51665 * 173.70593 * 22 20 19 24 24 C 1.35369 * 105.50231 * 179.84500 * 23 22 20 25 25 N 1.35040 * 107.22528 * 0.41187 * 24 23 22 26 26 H 0.97000 * 124.88241 * 179.73129 * 25 24 23 27 27 N 1.28462 * 110.23206 * 359.72522 * 25 24 23 28 28 C 1.46896 * 120.77457 * 30.39571 * 9 7 2 29 29 H 0.97005 * 120.00166 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.61256 * 354.04720 * 10 9 7 31 31 H 1.08994 * 109.61780 * 114.57079 * 10 9 7 32 32 H 1.08997 * 109.52551 * 184.76167 * 11 10 9 33 33 H 1.09001 * 109.28555 * 64.86129 * 11 10 9 34 34 H 1.08999 * 109.49716 * 182.40612 * 16 14 12 35 35 H 1.09007 * 109.49467 * 302.48266 * 16 14 12 36 36 H 1.09000 * 109.46502 * 59.35042 * 17 16 14 37 37 H 1.08996 * 109.46635 * 179.34971 * 17 16 14 38 38 H 1.09001 * 109.53873 * 173.93278 * 18 17 16 39 39 H 1.09001 * 109.54126 * 294.11218 * 18 17 16 40 40 H 1.07995 * 127.25197 * 359.97438 * 23 22 20 41 41 H 1.07990 * 126.38695 * 180.13924 * 24 23 22 42 42 H 1.08994 * 109.51625 * 246.57994 * 28 9 7 43 43 H 1.09001 * 109.51186 * 6.74910 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5268 2.0297 1.3996 5 1 3.5328 1.4488 -0.7290 6 1 1.4333 2.6609 -0.6707 7 6 2.0103 -1.2021 -0.0005 8 1 1.5207 -2.1081 -0.3262 9 7 3.3154 -1.2393 0.4118 10 6 4.2526 -2.2244 -0.1463 11 6 4.8934 -3.0012 1.0006 12 6 5.5435 -2.0241 1.9846 13 1 6.3263 -1.4468 1.4926 14 6 4.4774 -1.0841 2.5549 15 1 4.9471 -0.3868 3.2487 16 6 3.4386 -1.9180 3.3045 17 6 4.1132 -2.6320 4.4792 18 6 5.2105 -3.5602 3.9505 19 7 6.1263 -2.7849 3.1023 20 6 7.4532 -2.7839 3.3389 21 8 7.8933 -3.3226 4.3358 22 6 8.3726 -2.1281 2.3868 23 6 9.7641 -1.9359 2.5566 24 6 10.1810 -1.3004 1.4363 25 7 9.0963 -1.1184 0.6528 26 1 9.1048 -0.6825 -0.2138 27 7 8.0517 -1.6056 1.2199 28 6 3.8101 -0.2995 1.4267 29 1 -0.4850 0.8401 0.0004 30 1 3.7144 -2.9136 -0.7971 31 1 5.0281 -1.7107 -0.7145 32 1 5.6521 -3.6761 0.6044 33 1 4.1267 -3.5795 1.5163 34 1 2.6503 -1.2655 3.6797 35 1 3.0086 -2.6570 2.6283 36 1 4.5536 -1.8932 5.1488 37 1 3.3718 -3.2182 5.0221 38 1 5.7622 -3.9866 4.7883 39 1 4.7595 -4.3615 3.3652 40 1 10.3672 -2.2351 3.4010 41 1 11.1916 -0.9922 1.2130 42 1 4.5359 0.3762 0.9743 43 1 2.9757 0.2761 1.8273 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021530341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:14 Heat of formation + Delta-G solvation = 57.498270 kcal Electronic energy + Delta-G solvation = -26610.460968 eV Core-core repulsion = 23078.439019 eV Total energy + Delta-G solvation = -3532.021949 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.61209 -41.50567 -39.56894 -37.08052 -34.40755 -34.23046 -32.82482 -32.09615 -31.77313 -31.29467 -27.37754 -26.80414 -24.83775 -24.16053 -23.37720 -22.83159 -22.28564 -20.62516 -19.81646 -19.22011 -18.32434 -18.01031 -17.17224 -16.89320 -16.76623 -16.17745 -15.90947 -15.41357 -15.30511 -15.28184 -14.65193 -14.59234 -14.35033 -14.22886 -14.03649 -13.98609 -13.75327 -13.42794 -13.14129 -12.64637 -12.55410 -12.16242 -12.09234 -11.95008 -11.79043 -11.71373 -11.44624 -11.36038 -11.25561 -10.70711 -10.64784 -10.41060 -10.10007 -9.57403 -8.85413 -8.13646 -5.46232 0.51575 1.27714 1.31502 1.41435 1.50495 1.80680 2.23152 2.34558 2.44426 3.08306 3.31351 3.40525 3.67618 3.88651 3.93609 4.03289 4.07904 4.19238 4.22376 4.35230 4.42555 4.55300 4.64212 4.69925 4.77243 4.79966 4.80486 4.84002 4.93160 4.99258 5.01372 5.07267 5.08771 5.10759 5.29820 5.34311 5.39519 5.55946 5.68697 5.92865 6.17679 6.22319 6.38789 6.86977 6.95581 7.13493 7.65571 8.08809 9.06421 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017520 B = 0.005505 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.802564 B = 5084.976305 C = 5990.596401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.027 4.027 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.262 1.262 6 H -0.312 1.312 7 C -0.239 4.239 8 H 0.052 0.948 9 N -0.610 5.610 10 C 0.151 3.849 11 C -0.126 4.126 12 C 0.137 3.863 13 H 0.138 0.862 14 C -0.105 4.105 15 H 0.066 0.934 16 C -0.104 4.104 17 C -0.121 4.121 18 C 0.109 3.891 19 N -0.592 5.592 20 C 0.598 3.402 21 O -0.573 6.573 22 C -0.040 4.040 23 C -0.206 4.206 24 C 0.019 3.981 25 N -0.371 5.371 26 H 0.462 0.538 27 N -0.274 5.274 28 C 0.136 3.864 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.165 0.835 41 H 0.234 0.766 42 H 0.029 0.971 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.800 -2.565 3.265 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.222 4.222 3 Si 0.766 3.234 4 H -0.204 1.204 5 H -0.186 1.186 6 H -0.241 1.241 7 C -0.368 4.368 8 H 0.070 0.930 9 N -0.335 5.335 10 C 0.026 3.974 11 C -0.165 4.165 12 C 0.033 3.967 13 H 0.154 0.846 14 C -0.126 4.126 15 H 0.084 0.916 16 C -0.141 4.141 17 C -0.159 4.159 18 C -0.013 4.013 19 N -0.322 5.322 20 C 0.386 3.614 21 O -0.452 6.452 22 C -0.199 4.199 23 C -0.234 4.234 24 C -0.126 4.126 25 N -0.087 5.087 26 H 0.310 0.690 27 N -0.112 5.112 28 C 0.010 3.990 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.183 0.817 41 H 0.251 0.749 42 H 0.047 0.953 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.011 -2.626 3.106 21.401 hybrid contribution 0.124 1.002 0.035 1.011 sum 21.135 -1.624 3.141 21.429 Atomic orbital electron populations 1.69957 1.07385 1.27041 1.55778 1.25860 0.95629 1.00540 1.00171 0.86051 0.78758 0.80849 0.77745 1.20351 1.18598 1.24097 1.18764 0.86459 0.93198 1.38426 0.93041 1.44365 1.07265 1.38512 1.43324 1.20897 0.91644 0.90958 0.93893 1.22078 0.99417 0.97986 0.97041 1.22042 0.96345 0.92405 0.85881 0.84572 1.21755 0.96316 0.97391 0.97151 0.91581 1.21411 0.96928 0.99045 0.96762 1.21852 0.97655 0.99010 0.97394 1.21670 0.90796 0.93873 0.94914 1.48280 1.05401 1.47690 1.30877 1.17311 0.81426 0.78733 0.83942 1.90716 1.77141 1.48327 1.29007 1.21915 0.95594 1.07663 0.94724 1.22021 0.92742 1.06608 1.01998 1.23590 0.95727 1.02168 0.91105 1.43708 1.04141 1.41684 1.19126 0.69008 1.73333 1.14162 1.14359 1.09322 1.21207 0.96465 0.92058 0.89244 0.93096 0.92234 0.94350 0.91045 0.92258 0.93488 0.92001 0.91997 0.89107 0.89315 0.90663 0.81718 0.74946 0.95316 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.33 13.97 21.65 0.30 -59.02 16 2 C -0.03 -1.55 5.21 84.86 0.44 -1.11 16 3 Si 0.94 45.83 24.42 68.60 1.68 47.51 16 4 H -0.28 -12.94 6.50 99.48 0.65 -12.29 16 5 H -0.26 -12.17 6.97 99.48 0.69 -11.48 16 6 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 7 C -0.24 -13.13 10.01 84.04 0.84 -12.29 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.61 -27.56 2.34 -700.96 -1.64 -29.20 16 10 C 0.15 5.61 6.48 86.16 0.56 6.17 16 11 C -0.13 -4.01 4.98 30.52 0.15 -3.85 16 12 C 0.14 4.29 2.40 44.95 0.11 4.39 16 13 H 0.14 4.23 4.16 -22.12 -0.09 4.14 16 14 C -0.11 -3.68 2.50 -10.87 -0.03 -3.71 16 15 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 16 C -0.10 -3.58 4.84 30.59 0.15 -3.43 16 17 C -0.12 -3.35 6.08 30.68 0.19 -3.16 16 18 C 0.11 3.06 5.94 86.34 0.51 3.57 16 19 N -0.59 -18.01 2.68 -797.67 -2.14 -20.15 16 20 C 0.60 19.03 7.70 86.75 0.67 19.70 16 21 O -0.57 -20.68 16.37 -3.92 -0.06 -20.75 16 22 C -0.04 -1.07 6.86 42.46 0.29 -0.78 16 23 C -0.21 -4.09 10.81 22.41 0.24 -3.84 16 24 C 0.02 0.22 12.02 83.54 1.00 1.22 16 25 N -0.37 -5.29 6.83 -57.51 -0.39 -5.68 16 26 H 0.46 3.21 8.96 -220.00 -1.97 1.23 16 27 N -0.27 -6.50 8.73 -48.17 -0.42 -6.92 16 28 C 0.14 5.69 3.63 86.23 0.31 6.00 16 29 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 30 H 0.06 2.25 7.94 -2.38 -0.02 2.23 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 2.00 5.26 -2.39 -0.01 1.99 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 2.37 6.03 -2.38 -0.01 2.35 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.48 7.01 -2.39 -0.02 2.46 16 39 H 0.08 2.00 7.22 -2.39 -0.02 1.98 16 40 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 41 H 0.23 0.17 8.06 -2.92 -0.02 0.15 16 42 H 0.03 1.17 7.22 -2.39 -0.02 1.16 16 43 H 0.05 2.37 4.80 -2.39 -0.01 2.36 16 Total: -1.00 -73.75 325.35 1.68 -72.07 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -1.08 Total: 13.27 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.44 Total: 8.88 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -4.29 Total: -120.98 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.06 Total: -20.75 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.68 Total: 47.51 kcal Total: -73.75 1.68 -72.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021530341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.566 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds