Wall clock time and date at job start Fri Apr 10 2020 17:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00328 * 2 1 4 4 H 1.48492 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46729 * 299.99837 * 3 2 1 6 6 H 1.48503 * 109.47253 * 59.99415 * 3 2 1 7 7 C 1.38816 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99731 * 197.67094 * 7 2 1 9 9 N 1.36936 * 119.99777 * 17.66906 * 7 2 1 10 10 C 1.46865 * 120.46868 * 206.09518 * 9 7 2 11 11 C 1.53317 * 109.09945 * 232.65202 * 10 9 7 12 12 C 1.52893 * 108.94910 * 305.89556 * 11 10 9 13 13 H 1.08998 * 109.52797 * 302.19534 * 12 11 10 14 14 C 1.53274 * 109.16417 * 62.11388 * 12 11 10 15 15 H 1.08995 * 109.46886 * 56.47289 * 14 12 11 16 16 C 1.52816 * 109.16235 * 176.28625 * 14 12 11 17 17 C 1.53147 * 109.26882 * 298.19003 * 16 14 12 18 18 C 1.53127 * 109.62112 * 60.84751 * 17 16 14 19 19 N 1.46711 * 110.29937 * 181.36276 * 12 11 10 20 20 C 1.34776 * 120.84366 * 6.05626 * 19 12 11 21 21 O 1.21602 * 120.00094 * 1.33602 * 20 19 12 22 22 C 1.47432 * 120.00220 * 181.34173 * 20 19 12 23 23 C 1.41296 * 126.40881 * 332.67912 * 22 20 19 24 24 N 1.30449 * 108.01819 * 179.85596 * 23 22 20 25 25 N 1.39932 * 108.89843 * 0.40284 * 24 23 22 26 26 H 0.97004 * 125.75000 * 179.73628 * 25 24 23 27 27 C 1.34258 * 108.49222 * 359.73997 * 25 24 23 28 28 C 1.47072 * 120.46591 * 26.10021 * 9 7 2 29 29 H 0.97009 * 119.99625 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.53310 * 112.76753 * 10 9 7 31 31 H 1.08998 * 109.59362 * 352.57768 * 10 9 7 32 32 H 1.09003 * 109.55505 * 186.05687 * 11 10 9 33 33 H 1.08998 * 109.56065 * 65.73816 * 11 10 9 34 34 H 1.08998 * 109.50536 * 178.25251 * 16 14 12 35 35 H 1.09007 * 109.53982 * 58.14750 * 16 14 12 36 36 H 1.09001 * 109.44686 * 300.79918 * 17 16 14 37 37 H 1.09008 * 109.44376 * 180.88986 * 17 16 14 38 38 H 1.09000 * 109.54599 * 65.87394 * 18 17 16 39 39 H 1.09000 * 109.54517 * 186.13779 * 18 17 16 40 40 H 1.07998 * 125.98984 * 359.97438 * 23 22 20 41 41 H 1.07998 * 126.29294 * 179.97438 * 27 25 24 42 42 H 1.08997 * 109.69614 * 6.97050 * 28 9 7 43 43 H 1.09000 * 109.68226 * 246.39641 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0519 -1.2241 0.2845 9 7 1.3739 -2.3602 -0.3589 10 6 1.8427 -3.6561 0.1490 11 6 2.0642 -4.6076 -1.0326 12 6 0.7829 -4.6732 -1.8642 13 1 -0.0434 -5.0036 -1.2348 14 6 0.4749 -3.2802 -2.4246 15 1 1.3284 -2.9239 -3.0013 16 6 -0.7528 -3.3643 -3.3307 17 6 -0.4503 -4.2977 -4.5065 18 6 -0.1281 -5.6993 -3.9806 19 7 0.9517 -5.6025 -2.9868 20 6 2.0678 -6.3488 -3.1043 21 8 2.9403 -6.2747 -2.2605 22 6 2.2310 -7.2549 -4.2557 23 6 1.1939 -7.8669 -4.9949 24 7 1.7398 -8.5903 -5.9332 25 7 3.1317 -8.4848 -5.8349 26 1 3.7756 -8.9267 -6.4103 27 6 3.4256 -7.6689 -4.8099 28 6 0.2114 -2.3239 -1.2591 29 1 -0.4850 0.8402 -0.0004 30 1 1.0941 -4.0769 0.8204 31 1 2.7803 -3.5199 0.6880 32 1 2.3083 -5.6022 -0.6593 33 1 2.8819 -4.2374 -1.6510 34 1 -0.9955 -2.3708 -3.7078 35 1 -1.5981 -3.7550 -2.7640 36 1 0.4041 -3.9140 -5.0640 37 1 -1.3189 -4.3474 -5.1632 38 1 -1.0157 -6.1267 -3.5140 39 1 0.1925 -6.3340 -4.8067 40 1 0.1349 -7.7539 -4.8158 41 1 4.4147 -7.3885 -4.4794 42 1 0.0723 -1.3116 -1.6387 43 1 -0.6811 -2.6400 -0.7191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021532164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:18 Heat of formation + Delta-G solvation = 68.722893 kcal Electronic energy + Delta-G solvation = -26076.286392 eV Core-core repulsion = 22544.751179 eV Total energy + Delta-G solvation = -3531.535213 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.50362 -41.22462 -38.88574 -37.34527 -34.62923 -34.11959 -32.83731 -31.93857 -31.24629 -30.46938 -27.31703 -26.49315 -24.64760 -23.96359 -23.08792 -22.89562 -21.28182 -21.01421 -20.29954 -18.81830 -18.69377 -17.10047 -16.94950 -16.71505 -16.40874 -15.97804 -15.61948 -15.47546 -15.28902 -15.05787 -14.93532 -14.60452 -14.05240 -13.89155 -13.77832 -13.52959 -13.43995 -13.13669 -12.83998 -12.69964 -12.43815 -12.15273 -12.05394 -12.00656 -11.95886 -11.63740 -11.56243 -11.42435 -11.01253 -10.68551 -10.55848 -10.11671 -9.82073 -9.38617 -8.65503 -7.86173 -5.29971 0.62834 1.16547 1.44894 1.46501 1.57708 1.80847 2.08276 2.44631 2.51322 3.26144 3.56979 3.65560 3.85765 3.90894 3.96108 4.02394 4.13844 4.20044 4.33742 4.38304 4.42435 4.52206 4.63888 4.69194 4.75760 4.83580 4.91378 4.94832 4.99361 5.05825 5.15660 5.23212 5.33474 5.36147 5.43342 5.48790 5.55174 5.65749 5.75775 5.81285 6.24033 6.39147 6.50569 6.63663 7.15447 7.35751 7.86682 8.37170 9.19153 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.003979 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.526709 B = 7035.452552 C = 7487.163542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.265 4.265 8 H 0.060 0.940 9 N -0.614 5.614 10 C 0.136 3.864 11 C -0.096 4.096 12 C 0.166 3.834 13 H 0.067 0.933 14 C -0.106 4.106 15 H 0.041 0.959 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.081 3.919 19 N -0.600 5.600 20 C 0.585 3.415 21 O -0.577 6.577 22 C -0.313 4.313 23 C 0.076 3.924 24 N -0.314 5.314 25 N -0.449 5.449 26 H 0.459 0.541 27 C 0.139 3.861 28 C 0.189 3.811 29 H 0.251 0.749 30 H 0.015 0.985 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.224 0.776 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -17.288 -15.030 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.243 4.243 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.395 4.395 8 H 0.078 0.922 9 N -0.337 5.337 10 C 0.010 3.990 11 C -0.136 4.136 12 C 0.063 3.937 13 H 0.085 0.915 14 C -0.127 4.127 15 H 0.059 0.941 16 C -0.147 4.147 17 C -0.162 4.162 18 C -0.040 4.040 19 N -0.331 5.331 20 C 0.375 3.625 21 O -0.459 6.459 22 C -0.328 4.328 23 C -0.111 4.111 24 N -0.136 5.136 25 N -0.156 5.156 26 H 0.308 0.692 27 C -0.015 4.015 28 C 0.064 3.936 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.240 0.760 41 H 0.225 0.775 42 H 0.078 0.922 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 0.622 -17.924 -15.579 23.756 hybrid contribution 0.895 1.752 0.961 2.189 sum 1.516 -16.173 -14.617 21.852 Atomic orbital electron populations 1.70181 1.06396 1.25741 1.55437 1.25691 0.96113 1.01138 1.01396 0.85245 0.78452 0.79999 0.77001 1.19635 1.21339 1.21621 1.19540 0.93016 0.86423 1.40510 0.92249 1.44426 1.34697 1.01785 1.52781 1.21250 0.96889 0.86147 0.94754 1.22225 0.95649 0.99222 0.96457 1.20979 0.97830 0.88189 0.86718 0.91485 1.21980 0.98304 0.95105 0.97328 0.94070 1.21467 0.96546 1.00181 0.96528 1.21876 1.02653 0.94475 0.97217 1.22730 0.90146 0.98648 0.92512 1.48046 1.18798 1.40063 1.26158 1.17742 0.80990 0.79190 0.84533 1.90788 1.43296 1.68887 1.42897 1.20317 0.94488 1.12462 1.05508 1.24768 1.01261 0.93481 0.91544 1.77134 0.88159 1.24268 1.24019 1.46220 1.06495 1.37086 1.25839 0.69248 1.23295 1.00465 0.89742 0.87987 1.20615 0.87206 0.97642 0.88186 0.93998 0.96726 0.93485 0.89789 0.94093 0.92384 0.91127 0.92851 0.87588 0.89000 0.85969 0.76017 0.77519 0.92201 0.98055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 11.08 21.65 0.24 -55.48 16 2 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 3 Si 0.96 46.20 29.59 68.60 2.03 48.23 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.26 -15.42 9.59 84.03 0.81 -14.61 16 8 H 0.06 3.45 7.87 -2.91 -0.02 3.42 16 9 N -0.61 -32.90 3.01 -698.89 -2.10 -35.00 16 10 C 0.14 6.33 6.50 86.42 0.56 6.89 16 11 C -0.10 -3.96 3.80 30.66 0.12 -3.84 16 12 C 0.17 5.93 2.64 45.01 0.12 6.04 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C -0.11 -4.10 2.21 -10.74 -0.02 -4.13 16 15 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 16 C -0.11 -3.19 5.24 30.58 0.16 -3.03 16 17 C -0.12 -2.60 6.07 30.69 0.19 -2.41 16 18 C 0.08 1.54 5.49 86.31 0.47 2.02 16 19 N -0.60 -17.00 2.97 -799.19 -2.37 -19.38 16 20 C 0.59 17.41 7.57 86.67 0.66 18.07 16 21 O -0.58 -21.35 12.58 -4.04 -0.05 -21.40 16 22 C -0.31 -6.82 5.74 -20.15 -0.12 -6.94 16 23 C 0.08 1.31 9.72 85.65 0.83 2.15 16 24 N -0.31 -5.52 12.63 -56.27 -0.71 -6.23 16 25 N -0.45 -5.84 7.29 -56.32 -0.41 -6.25 16 26 H 0.46 2.55 8.96 -213.42 -1.91 0.64 16 27 C 0.14 2.29 11.92 84.27 1.00 3.30 16 28 C 0.19 9.35 4.65 86.29 0.40 9.76 16 29 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 30 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.05 2.20 7.92 -2.39 -0.02 2.18 16 32 H 0.08 3.41 6.23 -2.39 -0.01 3.39 16 33 H 0.04 1.86 7.35 -2.39 -0.02 1.84 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.12 1.80 3.28 -2.39 -0.01 1.79 16 40 H 0.22 2.55 5.86 -2.91 -0.02 2.53 16 41 H 0.21 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.06 3.34 5.93 -2.39 -0.01 3.32 16 43 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -75.72 329.58 1.34 -74.38 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -0.87 Total: 10.22 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 5.60 Total: 10.91 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -5.36 Total: -122.34 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -75.72 1.34 -74.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021532164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.099 kcal (2) G-P(sol) polarization free energy of solvation -75.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds