Wall clock time and date at job start Fri Apr 10 2020 17:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46883 * 299.99982 * 3 2 1 6 6 H 1.48497 * 109.47400 * 59.99881 * 3 2 1 7 7 C 1.38814 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99885 * 161.18485 * 7 2 1 9 9 N 1.36933 * 119.99947 * 341.19235 * 7 2 1 10 10 C 1.46869 * 120.46704 * 149.85652 * 9 7 2 11 11 C 1.53316 * 109.09978 * 127.33798 * 10 9 7 12 12 C 1.52886 * 108.95108 * 54.10101 * 11 10 9 13 13 H 1.08999 * 109.52022 * 57.78937 * 12 11 10 14 14 C 1.53280 * 109.16450 * 297.87818 * 12 11 10 15 15 H 1.08997 * 109.47312 * 303.54335 * 14 12 11 16 16 C 1.52819 * 109.16927 * 183.71754 * 14 12 11 17 17 C 1.53144 * 109.27051 * 61.79232 * 16 14 12 18 18 C 1.53120 * 109.59885 * 299.16870 * 17 16 14 19 19 N 1.46706 * 110.31102 * 178.61867 * 12 11 10 20 20 C 1.34770 * 120.84644 * 353.94234 * 19 12 11 21 21 O 1.21614 * 119.99643 * 6.70442 * 20 19 12 22 22 C 1.47432 * 120.00467 * 186.70491 * 20 19 12 23 23 C 1.41289 * 126.41093 * 31.47740 * 22 20 19 24 24 N 1.30453 * 108.01911 * 179.97438 * 23 22 20 25 25 N 1.39933 * 108.89850 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.74983 * 179.97438 * 25 24 23 27 27 C 1.34257 * 108.49265 * 359.75493 * 25 24 23 28 28 C 1.47074 * 120.46863 * 329.83460 * 9 7 2 29 29 H 0.97001 * 120.00451 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.52926 * 247.23090 * 10 9 7 31 31 H 1.09003 * 109.52433 * 7.45293 * 10 9 7 32 32 H 1.08999 * 109.55630 * 173.93943 * 11 10 9 33 33 H 1.08999 * 109.56324 * 294.15535 * 11 10 9 34 34 H 1.08996 * 109.50346 * 301.85216 * 16 14 12 35 35 H 1.08997 * 109.53608 * 181.75354 * 16 14 12 36 36 H 1.09006 * 109.44290 * 59.20023 * 17 16 14 37 37 H 1.08999 * 109.44327 * 179.13480 * 17 16 14 38 38 H 1.08995 * 109.54546 * 173.86072 * 18 17 16 39 39 H 1.09002 * 109.54030 * 294.12322 * 18 17 16 40 40 H 1.07995 * 125.99149 * 359.97264 * 23 22 20 41 41 H 1.07996 * 126.29576 * 180.23914 * 27 25 24 42 42 H 1.09001 * 109.68887 * 113.61648 * 28 9 7 43 43 H 1.09001 * 109.72030 * 353.06252 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0470 -1.2272 -0.3011 9 7 1.3805 -2.3562 0.3834 10 6 1.7832 -3.6486 -0.1863 11 6 2.0758 -4.6303 0.9543 12 6 0.8611 -4.6914 1.8807 13 1 -0.0174 -4.9922 1.3100 14 6 0.6249 -3.3061 2.4927 15 1 1.5271 -2.9782 3.0090 16 6 -0.5310 -3.3881 3.4889 17 6 -0.1579 -4.3535 4.6176 18 6 0.0948 -5.7481 4.0381 19 7 1.0968 -5.6489 2.9670 20 6 2.2033 -6.4181 2.9822 21 8 3.0792 -6.2397 2.1576 22 6 2.3520 -7.4759 3.9984 23 6 1.3094 -8.2274 4.5854 24 7 1.8423 -9.0617 5.4350 25 7 3.2307 -8.8868 5.4318 26 1 3.8654 -9.3816 5.9733 27 6 3.5364 -7.9222 4.5495 28 6 0.2915 -2.3191 1.3712 29 1 -0.4851 0.8400 0.0004 30 1 0.9772 -4.0403 -0.8068 31 1 2.6796 -3.5162 -0.7922 32 1 2.2707 -5.6205 0.5425 33 1 2.9469 -4.2901 1.5143 34 1 -1.4245 -3.7503 2.9806 35 1 -0.7246 -2.3993 3.9048 36 1 0.7445 -3.9984 5.1154 37 1 -0.9744 -4.4024 5.3380 38 1 0.4652 -6.4075 4.8230 39 1 -0.8344 -6.1482 3.6324 40 1 0.2561 -8.1285 4.3688 41 1 4.5266 -7.5599 4.3159 42 1 -0.6460 -2.6068 0.8953 43 1 0.2014 -1.3134 1.7817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021532165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:23 Heat of formation + Delta-G solvation = 79.178074 kcal Electronic energy + Delta-G solvation = -26035.396978 eV Core-core repulsion = 22504.315136 eV Total energy + Delta-G solvation = -3531.081842 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62117 -40.00472 -37.44954 -35.78727 -32.95735 -32.69685 -31.79936 -30.59613 -29.99710 -28.94517 -25.53811 -25.12689 -23.12957 -22.57089 -21.94985 -21.75341 -20.08822 -19.33161 -19.29423 -17.84404 -16.64378 -15.92573 -15.73719 -15.28340 -14.98217 -14.65889 -14.51802 -14.14105 -13.94657 -13.65438 -13.36948 -13.09790 -13.06974 -12.62806 -12.31014 -12.09164 -12.07350 -11.53856 -11.23416 -10.97334 -10.94043 -10.79235 -10.70604 -10.58643 -10.20537 -10.04246 -9.97425 -9.89140 -9.69261 -9.38004 -8.97601 -8.79749 -8.37068 -8.12634 -6.54410 -5.73267 -3.15047 1.42480 2.03503 2.47831 3.17446 3.40797 3.48105 3.49111 3.52332 4.41413 4.55735 4.62874 4.91158 4.95167 5.11295 5.15051 5.21799 5.38785 5.43007 5.46061 5.55624 5.67966 5.75580 5.79427 5.98009 6.03720 6.10082 6.23160 6.32595 6.43594 6.47569 6.52229 6.63688 6.71810 6.83173 6.87308 7.02818 7.10683 7.23683 7.29481 7.38995 7.65257 7.76075 7.88750 8.51060 8.54049 9.28150 9.92048 10.50167 11.35055 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.003920 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.655550 B = 7141.505247 C = 7611.785369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.138 3.862 11 C -0.114 4.114 12 C 0.159 3.841 13 H 0.065 0.935 14 C -0.120 4.120 15 H 0.066 0.934 16 C -0.112 4.112 17 C -0.132 4.132 18 C 0.100 3.900 19 N -0.601 5.601 20 C 0.589 3.411 21 O -0.534 6.534 22 C -0.284 4.284 23 C 0.079 3.921 24 N -0.300 5.300 25 N -0.467 5.467 26 H 0.443 0.557 27 C 0.123 3.877 28 C 0.185 3.815 29 H 0.252 0.748 30 H 0.013 0.987 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.193 0.807 41 H 0.189 0.811 42 H 0.020 0.980 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -16.075 12.680 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.011 3.989 11 C -0.153 4.153 12 C 0.057 3.943 13 H 0.083 0.917 14 C -0.141 4.141 15 H 0.085 0.915 16 C -0.151 4.151 17 C -0.171 4.171 18 C -0.023 4.023 19 N -0.333 5.333 20 C 0.377 3.623 21 O -0.412 6.412 22 C -0.299 4.299 23 C -0.108 4.108 24 N -0.121 5.121 25 N -0.173 5.173 26 H 0.287 0.713 27 C -0.029 4.029 28 C 0.058 3.942 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.210 0.790 41 H 0.206 0.794 42 H 0.038 0.962 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.328 -16.753 13.043 21.273 hybrid contribution 0.736 1.332 -0.180 1.532 sum 2.065 -15.422 12.863 20.188 Atomic orbital electron populations 1.70065 1.05253 1.25293 1.53911 1.25048 0.95191 0.98378 1.00863 0.86300 0.79595 0.84181 0.77199 1.20228 1.21787 1.21628 1.19218 0.93173 0.85188 1.40457 0.91831 1.44087 1.40575 1.01893 1.44961 1.21151 0.97543 0.86683 0.93488 1.22442 0.96168 0.99684 0.97036 1.21306 0.99015 0.87499 0.86442 0.91710 1.22251 0.98011 0.95858 0.98003 0.91505 1.21491 0.98625 0.99037 0.95898 1.21905 1.01623 0.95155 0.98371 1.22011 0.91920 0.98200 0.90209 1.48050 1.21141 1.39151 1.24959 1.17291 0.81688 0.80189 0.83172 1.90853 1.40799 1.70369 1.39147 1.20539 0.92808 1.07325 1.09181 1.24247 1.00256 0.92845 0.93467 1.77141 0.87572 1.23815 1.23575 1.46190 1.06980 1.30542 1.33573 0.71279 1.23010 1.00134 0.89440 0.90306 1.20683 0.89555 0.97170 0.86745 0.93812 0.96899 0.92687 0.91074 0.91157 0.92079 0.91696 0.91841 0.91263 0.89512 0.91561 0.79050 0.79388 0.96222 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 11.48 55.49 0.64 -25.63 16 2 C 0.00 0.11 4.84 -17.43 -0.08 0.02 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.25 -7.05 9.53 -15.06 -0.14 -7.20 16 8 H 0.06 1.79 7.90 -52.49 -0.41 1.37 16 9 N -0.59 -15.24 2.99 -172.25 -0.51 -15.75 16 10 C 0.14 3.10 6.50 -3.68 -0.02 3.08 16 11 C -0.11 -2.27 3.79 -26.63 -0.10 -2.37 16 12 C 0.16 2.82 2.64 -67.73 -0.18 2.64 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -2.26 2.21 -90.53 -0.20 -2.46 16 15 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 16 C -0.11 -1.68 5.24 -26.75 -0.14 -1.82 16 17 C -0.13 -1.57 6.07 -26.59 -0.16 -1.73 16 18 C 0.10 1.12 5.23 -3.70 -0.02 1.10 16 19 N -0.60 -8.87 2.97 -166.64 -0.49 -9.37 16 20 C 0.59 9.03 7.54 -12.52 -0.09 8.93 16 21 O -0.53 -9.89 12.58 5.27 0.07 -9.82 16 22 C -0.28 -3.39 5.47 -105.06 -0.57 -3.96 16 23 C 0.08 0.82 9.59 -16.98 -0.16 0.66 16 24 N -0.30 -3.12 12.63 30.86 0.39 -2.73 16 25 N -0.47 -3.73 7.29 30.85 0.22 -3.50 16 26 H 0.44 1.91 8.96 -182.72 -1.64 0.27 16 27 C 0.12 1.16 11.95 -16.56 -0.20 0.96 16 28 C 0.19 4.36 4.63 -3.69 -0.02 4.34 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 1.24 7.93 -51.93 -0.41 0.83 16 32 H 0.07 1.41 6.50 -51.93 -0.34 1.07 16 33 H 0.07 1.55 7.11 -51.93 -0.37 1.18 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.84 4.40 -51.93 -0.23 0.61 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.19 1.54 6.68 -52.49 -0.35 1.19 16 41 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 2.15 6.30 -51.93 -0.33 1.82 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -33.61 331.47 -9.26 -42.87 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.44 Total: -0.18 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.10 Total: 2.18 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.24 Total: -56.98 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.61 -9.26 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021532165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.049 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds