Wall clock time and date at job start Fri Apr 10 2020 17:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46883 * 299.99982 * 3 2 1 6 6 H 1.48497 * 109.47400 * 59.99881 * 3 2 1 7 7 C 1.38814 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99885 * 161.18485 * 7 2 1 9 9 N 1.36933 * 119.99947 * 341.19235 * 7 2 1 10 10 C 1.46869 * 120.46704 * 149.85652 * 9 7 2 11 11 C 1.53316 * 109.09978 * 127.33798 * 10 9 7 12 12 C 1.52886 * 108.95108 * 54.10101 * 11 10 9 13 13 H 1.08999 * 109.52022 * 57.78937 * 12 11 10 14 14 C 1.53280 * 109.16450 * 297.87818 * 12 11 10 15 15 H 1.08997 * 109.47312 * 303.54335 * 14 12 11 16 16 C 1.52819 * 109.16927 * 183.71754 * 14 12 11 17 17 C 1.53144 * 109.27051 * 61.79232 * 16 14 12 18 18 C 1.53120 * 109.59885 * 299.16870 * 17 16 14 19 19 N 1.46706 * 110.31102 * 178.61867 * 12 11 10 20 20 C 1.34770 * 120.84644 * 353.94234 * 19 12 11 21 21 O 1.21614 * 119.99643 * 6.70442 * 20 19 12 22 22 C 1.47432 * 120.00467 * 186.70491 * 20 19 12 23 23 C 1.41289 * 126.41093 * 31.47740 * 22 20 19 24 24 N 1.30453 * 108.01911 * 179.97438 * 23 22 20 25 25 N 1.39933 * 108.89850 * 359.97438 * 24 23 22 26 26 H 0.97001 * 125.74983 * 179.97438 * 25 24 23 27 27 C 1.34257 * 108.49265 * 359.75493 * 25 24 23 28 28 C 1.47074 * 120.46863 * 329.83460 * 9 7 2 29 29 H 0.97001 * 120.00451 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.52926 * 247.23090 * 10 9 7 31 31 H 1.09003 * 109.52433 * 7.45293 * 10 9 7 32 32 H 1.08999 * 109.55630 * 173.93943 * 11 10 9 33 33 H 1.08999 * 109.56324 * 294.15535 * 11 10 9 34 34 H 1.08996 * 109.50346 * 301.85216 * 16 14 12 35 35 H 1.08997 * 109.53608 * 181.75354 * 16 14 12 36 36 H 1.09006 * 109.44290 * 59.20023 * 17 16 14 37 37 H 1.08999 * 109.44327 * 179.13480 * 17 16 14 38 38 H 1.08995 * 109.54546 * 173.86072 * 18 17 16 39 39 H 1.09002 * 109.54030 * 294.12322 * 18 17 16 40 40 H 1.07995 * 125.99149 * 359.97264 * 23 22 20 41 41 H 1.07996 * 126.29576 * 180.23914 * 27 25 24 42 42 H 1.09001 * 109.68887 * 113.61648 * 28 9 7 43 43 H 1.09001 * 109.72030 * 353.06252 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0470 -1.2272 -0.3011 9 7 1.3805 -2.3562 0.3834 10 6 1.7832 -3.6486 -0.1863 11 6 2.0758 -4.6303 0.9543 12 6 0.8611 -4.6914 1.8807 13 1 -0.0174 -4.9922 1.3100 14 6 0.6249 -3.3061 2.4927 15 1 1.5271 -2.9782 3.0090 16 6 -0.5310 -3.3881 3.4889 17 6 -0.1579 -4.3535 4.6176 18 6 0.0948 -5.7481 4.0381 19 7 1.0968 -5.6489 2.9670 20 6 2.2033 -6.4181 2.9822 21 8 3.0792 -6.2397 2.1576 22 6 2.3520 -7.4759 3.9984 23 6 1.3094 -8.2274 4.5854 24 7 1.8423 -9.0617 5.4350 25 7 3.2307 -8.8868 5.4318 26 1 3.8654 -9.3816 5.9733 27 6 3.5364 -7.9222 4.5495 28 6 0.2915 -2.3191 1.3712 29 1 -0.4851 0.8400 0.0004 30 1 0.9772 -4.0403 -0.8068 31 1 2.6796 -3.5162 -0.7922 32 1 2.2707 -5.6205 0.5425 33 1 2.9469 -4.2901 1.5143 34 1 -1.4245 -3.7503 2.9806 35 1 -0.7246 -2.3993 3.9048 36 1 0.7445 -3.9984 5.1154 37 1 -0.9744 -4.4024 5.3380 38 1 0.4652 -6.4075 4.8230 39 1 -0.8344 -6.1482 3.6324 40 1 0.2561 -8.1285 4.3688 41 1 4.5266 -7.5599 4.3159 42 1 -0.6460 -2.6068 0.8953 43 1 0.2014 -1.3134 1.7817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021532165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:22 Heat of formation + Delta-G solvation = 56.490478 kcal Electronic energy + Delta-G solvation = -26036.380786 eV Core-core repulsion = 22504.315136 eV Total energy + Delta-G solvation = -3532.065650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.45908 -41.23255 -38.87835 -37.31029 -34.58412 -34.11969 -32.78540 -31.96392 -31.24733 -30.48403 -27.27215 -26.44862 -24.59191 -23.91919 -23.08638 -22.86893 -21.29432 -21.04819 -20.26799 -18.80472 -18.68030 -17.10321 -16.89956 -16.67180 -16.40588 -15.84767 -15.58615 -15.44467 -15.32517 -15.10858 -14.99891 -14.61666 -13.99907 -13.93907 -13.75679 -13.63354 -13.41547 -13.15733 -12.84814 -12.69049 -12.47424 -12.19104 -12.09446 -12.01246 -11.97922 -11.68129 -11.54493 -11.41017 -11.01446 -10.70384 -10.57755 -10.16063 -9.79586 -9.38290 -8.61731 -7.87749 -5.33991 0.64294 1.19425 1.44385 1.46225 1.57632 1.81485 2.09326 2.41645 2.50910 3.24746 3.56463 3.65606 3.90437 3.91371 3.95753 4.01502 4.15616 4.20864 4.34094 4.38717 4.43895 4.52786 4.66097 4.70681 4.74854 4.82804 4.91684 4.94197 4.98885 5.06327 5.15506 5.21171 5.33086 5.36508 5.42569 5.50237 5.51862 5.66099 5.74050 5.80098 6.25145 6.39878 6.52031 6.63611 7.15283 7.35304 7.85379 8.38653 9.17754 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.003920 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.655550 B = 7141.505247 C = 7611.785369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.042 4.042 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.270 4.270 8 H 0.056 0.944 9 N -0.612 5.612 10 C 0.136 3.864 11 C -0.093 4.093 12 C 0.166 3.834 13 H 0.069 0.931 14 C -0.106 4.106 15 H 0.042 0.958 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.097 3.903 19 N -0.601 5.601 20 C 0.585 3.415 21 O -0.576 6.576 22 C -0.312 4.312 23 C 0.086 3.914 24 N -0.316 5.316 25 N -0.450 5.450 26 H 0.459 0.541 27 C 0.138 3.862 28 C 0.194 3.806 29 H 0.251 0.749 30 H 0.014 0.986 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.214 0.786 41 H 0.208 0.792 42 H 0.004 0.996 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -17.784 14.851 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.400 4.400 8 H 0.074 0.926 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.132 4.132 12 C 0.063 3.937 13 H 0.087 0.913 14 C -0.127 4.127 15 H 0.060 0.940 16 C -0.147 4.147 17 C -0.162 4.162 18 C -0.025 4.025 19 N -0.332 5.332 20 C 0.376 3.624 21 O -0.458 6.458 22 C -0.327 4.327 23 C -0.102 4.102 24 N -0.137 5.137 25 N -0.157 5.157 26 H 0.307 0.693 27 C -0.016 4.016 28 C 0.068 3.932 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.230 0.770 41 H 0.225 0.775 42 H 0.022 0.978 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.016 -18.516 15.270 24.022 hybrid contribution 0.880 1.813 -0.869 2.194 sum 1.896 -16.703 14.401 22.135 Atomic orbital electron populations 1.70190 1.06505 1.25913 1.54734 1.25766 0.96018 1.01288 1.00774 0.85285 0.78560 0.80011 0.77057 1.19601 1.21540 1.21243 1.19459 0.93188 0.86624 1.40732 0.92600 1.44361 1.40894 1.02279 1.45978 1.21249 0.97007 0.86240 0.94530 1.22152 0.96279 0.98527 0.96207 1.20974 0.97818 0.87759 0.87127 0.91287 1.21977 0.98607 0.95159 0.96989 0.93971 1.21469 0.97129 1.00066 0.96049 1.21877 1.02459 0.94371 0.97534 1.22321 0.92073 0.98287 0.89776 1.48033 1.22088 1.38141 1.24945 1.17757 0.80909 0.80500 0.83266 1.90820 1.42198 1.71713 1.41025 1.20300 0.94601 1.07807 1.10007 1.24516 1.00954 0.92011 0.92670 1.77127 0.88560 1.24147 1.23902 1.46209 1.06725 1.29814 1.32938 0.69268 1.23298 1.00356 0.88649 0.89299 1.20505 0.88435 0.96721 0.87514 0.93941 0.96807 0.93591 0.90704 0.93570 0.91024 0.92314 0.92873 0.87654 0.87234 0.89010 0.77012 0.77541 0.97789 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 11.48 21.65 0.25 -55.40 16 2 C -0.04 -2.43 4.84 84.86 0.41 -2.02 16 3 Si 0.96 46.15 29.59 68.60 2.03 48.18 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.27 -15.75 9.53 84.03 0.80 -14.95 16 8 H 0.06 3.27 7.90 -2.91 -0.02 3.24 16 9 N -0.61 -32.79 2.99 -698.87 -2.09 -34.88 16 10 C 0.14 6.35 6.50 86.41 0.56 6.91 16 11 C -0.09 -3.79 3.79 30.66 0.12 -3.67 16 12 C 0.17 5.88 2.64 45.01 0.12 5.99 16 13 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.11 -4.06 2.21 -10.74 -0.02 -4.09 16 15 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 16 C -0.11 -3.13 5.24 30.58 0.16 -2.97 16 17 C -0.12 -2.58 6.07 30.68 0.19 -2.40 16 18 C 0.10 1.84 5.23 86.32 0.45 2.29 16 19 N -0.60 -16.82 2.97 -799.37 -2.37 -19.19 16 20 C 0.59 17.28 7.54 86.67 0.65 17.94 16 21 O -0.58 -21.42 12.58 -4.07 -0.05 -21.47 16 22 C -0.31 -6.72 5.47 -20.15 -0.11 -6.83 16 23 C 0.09 1.48 9.59 85.65 0.82 2.30 16 24 N -0.32 -5.54 12.63 -56.28 -0.71 -6.25 16 25 N -0.45 -5.76 7.29 -56.32 -0.41 -6.17 16 26 H 0.46 2.47 8.96 -213.43 -1.91 0.56 16 27 C 0.14 2.23 11.95 84.28 1.01 3.23 16 28 C 0.19 9.52 4.63 86.29 0.40 9.92 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 32 H 0.07 3.02 6.50 -2.39 -0.02 3.00 16 33 H 0.05 2.11 7.11 -2.39 -0.02 2.09 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.11 1.66 4.40 -2.39 -0.01 1.65 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.21 2.53 6.68 -2.91 -0.02 2.51 16 41 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.05 2.67 6.30 -2.39 -0.02 2.66 16 Total: -1.00 -75.76 331.47 1.32 -74.44 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -0.88 Total: 9.08 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.55 Total: 11.66 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.33 Total: -121.89 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.76 1.32 -74.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021532165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.931 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds