Wall clock time and date at job start Fri Apr 10 2020 17:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48495 * 109.46899 * 274.77982 * 3 2 1 5 5 H 1.48498 * 109.47044 * 34.78623 * 3 2 1 6 6 H 1.48500 * 109.46767 * 154.77935 * 3 2 1 7 7 C 1.38815 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99808 * 197.50376 * 7 2 1 9 9 N 1.36936 * 119.99674 * 17.50662 * 7 2 1 10 10 C 1.46975 * 120.77868 * 27.39335 * 9 7 2 11 11 C 1.53093 * 108.61978 * 125.69666 * 10 9 7 12 12 C 1.53159 * 109.58049 * 55.34765 * 11 10 9 13 13 H 1.09000 * 110.05900 * 60.60089 * 12 11 10 14 14 C 1.53143 * 109.59558 * 299.42998 * 12 11 10 15 15 H 1.09001 * 108.58483 * 179.17467 * 14 12 11 16 16 C 1.52855 * 109.36446 * 298.31268 * 14 12 11 17 17 C 1.53116 * 109.35198 * 297.98359 * 16 14 12 18 18 C 1.53145 * 109.47296 * 60.65354 * 17 16 14 19 19 N 1.46947 * 109.10230 * 305.87535 * 18 17 16 20 20 C 1.34774 * 120.84549 * 234.07861 * 19 18 17 21 21 O 1.21602 * 120.00079 * 173.55818 * 20 19 18 22 22 C 1.47427 * 119.99854 * 353.55344 * 20 19 18 23 23 C 1.41288 * 126.41930 * 326.07144 * 22 20 19 24 24 N 1.30441 * 108.02560 * 179.97438 * 23 22 20 25 25 N 1.39933 * 108.89995 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.76145 * 179.97438 * 25 24 23 27 27 C 1.34261 * 108.48862 * 359.75045 * 25 24 23 28 28 C 1.46894 * 120.77185 * 207.40607 * 9 7 2 29 29 H 0.96996 * 120.00169 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.60932 * 245.44079 * 10 9 7 31 31 H 1.09009 * 109.61116 * 5.95666 * 10 9 7 32 32 H 1.08997 * 109.45186 * 175.38329 * 11 10 9 33 33 H 1.08992 * 109.45158 * 295.33553 * 11 10 9 34 34 H 1.09007 * 109.48523 * 178.02599 * 16 14 12 35 35 H 1.08995 * 109.49471 * 57.95173 * 16 14 12 36 36 H 1.09002 * 109.46862 * 300.65663 * 17 16 14 37 37 H 1.08990 * 109.46734 * 180.65452 * 17 16 14 38 38 H 1.08997 * 109.54614 * 65.78377 * 18 17 16 39 39 H 1.09005 * 109.54343 * 185.96374 * 18 17 16 40 40 H 1.08005 * 125.98788 * 0.02562 * 23 22 20 41 41 H 1.08002 * 126.29362 * 180.24427 * 27 25 24 42 42 H 1.09003 * 109.51210 * 113.41136 * 28 9 7 43 43 H 1.08998 * 109.56285 * 353.27589 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3966 2.1047 -1.3952 5 1 1.5018 2.6213 0.7988 6 1 3.5946 1.4131 0.5966 7 6 2.0103 -1.2022 0.0005 8 1 3.0529 -1.2237 0.2819 9 7 1.3732 -2.3607 -0.3557 10 6 0.2261 -2.3364 -1.2743 11 6 0.5108 -3.2907 -2.4371 12 6 0.8295 -4.6854 -1.8902 13 1 -0.0202 -5.0686 -1.3252 14 6 2.0682 -4.6143 -0.9926 15 1 2.2713 -5.6111 -0.6012 16 6 3.2657 -4.1432 -1.8176 17 6 3.5468 -5.1580 -2.9291 18 6 2.3230 -5.2658 -3.8434 19 7 1.1390 -5.5710 -3.0283 20 6 0.3593 -6.6329 -3.3126 21 8 -0.5467 -6.9403 -2.5621 22 6 0.6048 -7.4217 -4.5336 23 6 1.0699 -6.9269 -5.7726 24 7 1.1587 -7.9309 -6.6006 25 7 0.7600 -9.0989 -5.9411 26 1 0.7316 -9.9874 -6.3291 27 6 0.4281 -8.7831 -4.6790 28 6 1.8200 -3.6569 0.1716 29 1 -0.4850 0.8400 0.0004 30 1 -0.6716 -2.6593 -0.7472 31 1 0.0851 -1.3254 -1.6568 32 1 -0.3647 -3.3458 -3.0841 33 1 1.3622 -2.9221 -3.0091 34 1 4.1406 -4.0582 -1.1729 35 1 3.0434 -3.1720 -2.2595 36 1 3.7570 -6.1320 -2.4872 37 1 4.4076 -4.8298 -3.5115 38 1 2.1729 -4.3205 -4.3648 39 1 2.4802 -6.0624 -4.5707 40 1 1.3106 -5.8977 -5.9949 41 1 0.0841 -9.4679 -3.9181 42 1 1.0505 -4.0692 0.8244 43 1 2.7428 -3.5228 0.7360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021532166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:26 Heat of formation + Delta-G solvation = 67.831357 kcal Electronic energy + Delta-G solvation = -26026.614848 eV Core-core repulsion = 22495.040976 eV Total energy + Delta-G solvation = -3531.573873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60968 -39.96119 -37.78793 -35.51412 -33.01096 -32.27470 -31.86163 -30.64367 -29.68435 -29.61926 -25.59702 -25.14220 -23.22343 -22.33673 -21.94369 -21.75914 -21.09160 -19.50479 -18.10240 -17.75858 -16.71456 -16.31069 -15.58277 -15.23572 -14.96768 -14.76740 -14.49073 -14.33524 -13.84008 -13.64904 -13.48178 -13.17265 -12.82660 -12.72553 -12.46280 -12.23467 -12.17662 -11.37142 -11.31851 -11.15834 -10.86262 -10.72378 -10.60730 -10.46716 -10.20073 -10.06330 -9.98013 -9.89228 -9.71585 -9.56987 -9.34740 -8.96780 -8.49459 -8.14660 -6.65647 -5.76654 -3.18271 1.41307 2.04296 2.47401 3.16913 3.38494 3.42848 3.46192 3.47407 4.42593 4.51107 4.60992 4.91709 4.98410 5.14625 5.16765 5.23903 5.39344 5.41915 5.46039 5.53167 5.62555 5.72878 5.78249 6.01346 6.08591 6.09587 6.16623 6.27856 6.36528 6.42570 6.50486 6.60009 6.67500 6.82545 6.86200 6.87274 6.99865 7.01094 7.23894 7.38715 7.66414 7.75901 7.82043 8.44239 8.46754 9.22907 9.86582 10.43912 11.31853 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.028590 B = 0.003742 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.121103 B = 7481.367600 C = 7616.211593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C 0.156 3.844 13 H 0.095 0.905 14 C -0.107 4.107 15 H 0.057 0.943 16 C -0.107 4.107 17 C -0.132 4.132 18 C 0.100 3.900 19 N -0.599 5.599 20 C 0.591 3.409 21 O -0.551 6.551 22 C -0.281 4.281 23 C 0.083 3.917 24 N -0.298 5.298 25 N -0.467 5.467 26 H 0.443 0.557 27 C 0.121 3.879 28 C 0.152 3.848 29 H 0.253 0.747 30 H 0.019 0.981 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.193 0.807 41 H 0.189 0.811 42 H 0.019 0.981 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 -16.196 -11.076 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.046 3.954 11 C -0.188 4.188 12 C 0.054 3.946 13 H 0.113 0.887 14 C -0.128 4.128 15 H 0.075 0.925 16 C -0.145 4.145 17 C -0.171 4.171 18 C -0.023 4.023 19 N -0.330 5.330 20 C 0.379 3.621 21 O -0.429 6.429 22 C -0.296 4.296 23 C -0.105 4.105 24 N -0.120 5.120 25 N -0.173 5.173 26 H 0.287 0.713 27 C -0.031 4.031 28 C 0.025 3.975 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.210 0.790 41 H 0.205 0.795 42 H 0.037 0.963 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.354 -16.538 -11.838 20.799 hybrid contribution 0.217 0.640 0.571 0.885 sum 4.571 -15.898 -11.267 20.014 Atomic orbital electron populations 1.70036 1.05220 1.25428 1.53934 1.25021 0.95238 0.98336 1.01073 0.86297 0.79162 0.83933 0.77532 1.21554 1.21881 1.20445 1.19177 0.92714 0.84758 1.41192 0.91621 1.44041 1.35502 1.01175 1.50348 1.20769 0.88680 0.98343 0.87606 1.22599 1.00446 0.95012 1.00747 1.21389 0.98032 0.89359 0.85799 0.88731 1.21815 0.94525 0.99222 0.97228 0.92464 1.21477 0.97440 0.99162 0.96376 1.21930 0.96858 1.00253 0.98031 1.21953 0.85148 1.01378 0.93806 1.48343 1.26239 1.27291 1.31158 1.17277 0.81490 0.79598 0.83770 1.90765 1.32391 1.69150 1.50636 1.20418 1.18423 0.93873 0.96897 1.24230 0.96578 0.99185 0.90496 1.77152 1.22784 0.91187 1.20837 1.46185 1.51937 1.10265 1.08891 0.71277 1.22982 0.95777 0.96430 0.87912 1.20797 0.97868 0.86696 0.92161 0.93659 0.96271 0.89023 0.93218 0.91959 0.92385 0.90065 0.92289 0.91284 0.91229 0.89797 0.79012 0.79459 0.96294 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.17 55.49 0.62 -25.20 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.59 9.60 -15.06 -0.14 -6.73 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.15 2.64 -172.62 -0.46 -14.61 16 10 C 0.17 4.04 5.34 -3.73 -0.02 4.02 16 11 C -0.15 -2.80 5.02 -26.60 -0.13 -2.94 16 12 C 0.16 2.76 2.64 -67.23 -0.18 2.58 16 13 H 0.09 1.90 7.11 -51.93 -0.37 1.53 16 14 C -0.11 -1.84 2.45 -90.74 -0.22 -2.06 16 15 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 16 C -0.11 -1.65 4.86 -26.75 -0.13 -1.78 16 17 C -0.13 -1.62 6.08 -26.60 -0.16 -1.78 16 18 C 0.10 1.20 4.82 -3.72 -0.02 1.19 16 19 N -0.60 -8.97 2.67 -166.00 -0.44 -9.41 16 20 C 0.59 9.22 7.61 -12.52 -0.10 9.12 16 21 O -0.55 -10.56 16.54 5.28 0.09 -10.47 16 22 C -0.28 -3.42 5.40 -105.07 -0.57 -3.99 16 23 C 0.08 0.89 9.58 -16.98 -0.16 0.73 16 24 N -0.30 -3.18 12.63 30.86 0.39 -2.79 16 25 N -0.47 -3.73 7.29 30.85 0.22 -3.50 16 26 H 0.44 1.87 8.96 -182.72 -1.64 0.24 16 27 C 0.12 1.12 11.97 -16.56 -0.20 0.93 16 28 C 0.15 3.12 5.90 -3.95 -0.02 3.10 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 2.40 6.00 -51.92 -0.31 2.09 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.15 5.32 -51.93 -0.28 0.88 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.44 6.15 -51.93 -0.32 1.12 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.81 7.25 -51.93 -0.38 0.44 16 39 H 0.08 0.86 4.48 -51.93 -0.23 0.63 16 40 H 0.19 1.71 6.87 -52.48 -0.36 1.35 16 41 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 331.38 15.07 4.99 4.99 Total: -1.00 -32.55 331.38 -8.98 -41.53 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.23 Total: 0.82 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.14 Total: 2.35 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.34 Total: -55.52 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.55 -8.98 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021532166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.364 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds