Wall clock time and date at job start Fri Apr 10 2020 17:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48495 * 109.46899 * 274.77982 * 3 2 1 5 5 H 1.48498 * 109.47044 * 34.78623 * 3 2 1 6 6 H 1.48500 * 109.46767 * 154.77935 * 3 2 1 7 7 C 1.38815 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99808 * 197.50376 * 7 2 1 9 9 N 1.36936 * 119.99674 * 17.50662 * 7 2 1 10 10 C 1.46975 * 120.77868 * 27.39335 * 9 7 2 11 11 C 1.53093 * 108.61978 * 125.69666 * 10 9 7 12 12 C 1.53159 * 109.58049 * 55.34765 * 11 10 9 13 13 H 1.09000 * 110.05900 * 60.60089 * 12 11 10 14 14 C 1.53143 * 109.59558 * 299.42998 * 12 11 10 15 15 H 1.09001 * 108.58483 * 179.17467 * 14 12 11 16 16 C 1.52855 * 109.36446 * 298.31268 * 14 12 11 17 17 C 1.53116 * 109.35198 * 297.98359 * 16 14 12 18 18 C 1.53145 * 109.47296 * 60.65354 * 17 16 14 19 19 N 1.46947 * 109.10230 * 305.87535 * 18 17 16 20 20 C 1.34774 * 120.84549 * 234.07861 * 19 18 17 21 21 O 1.21602 * 120.00079 * 173.55818 * 20 19 18 22 22 C 1.47427 * 119.99854 * 353.55344 * 20 19 18 23 23 C 1.41288 * 126.41930 * 326.07144 * 22 20 19 24 24 N 1.30441 * 108.02560 * 179.97438 * 23 22 20 25 25 N 1.39933 * 108.89995 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.76145 * 179.97438 * 25 24 23 27 27 C 1.34261 * 108.48862 * 359.75045 * 25 24 23 28 28 C 1.46894 * 120.77185 * 207.40607 * 9 7 2 29 29 H 0.96996 * 120.00169 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.60932 * 245.44079 * 10 9 7 31 31 H 1.09009 * 109.61116 * 5.95666 * 10 9 7 32 32 H 1.08997 * 109.45186 * 175.38329 * 11 10 9 33 33 H 1.08992 * 109.45158 * 295.33553 * 11 10 9 34 34 H 1.09007 * 109.48523 * 178.02599 * 16 14 12 35 35 H 1.08995 * 109.49471 * 57.95173 * 16 14 12 36 36 H 1.09002 * 109.46862 * 300.65663 * 17 16 14 37 37 H 1.08990 * 109.46734 * 180.65452 * 17 16 14 38 38 H 1.08997 * 109.54614 * 65.78377 * 18 17 16 39 39 H 1.09005 * 109.54343 * 185.96374 * 18 17 16 40 40 H 1.08005 * 125.98788 * 0.02562 * 23 22 20 41 41 H 1.08002 * 126.29362 * 180.24427 * 27 25 24 42 42 H 1.09003 * 109.51210 * 113.41136 * 28 9 7 43 43 H 1.08998 * 109.56285 * 353.27589 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3966 2.1047 -1.3952 5 1 1.5018 2.6213 0.7988 6 1 3.5946 1.4131 0.5966 7 6 2.0103 -1.2022 0.0005 8 1 3.0529 -1.2237 0.2819 9 7 1.3732 -2.3607 -0.3557 10 6 0.2261 -2.3364 -1.2743 11 6 0.5108 -3.2907 -2.4371 12 6 0.8295 -4.6854 -1.8902 13 1 -0.0202 -5.0686 -1.3252 14 6 2.0682 -4.6143 -0.9926 15 1 2.2713 -5.6111 -0.6012 16 6 3.2657 -4.1432 -1.8176 17 6 3.5468 -5.1580 -2.9291 18 6 2.3230 -5.2658 -3.8434 19 7 1.1390 -5.5710 -3.0283 20 6 0.3593 -6.6329 -3.3126 21 8 -0.5467 -6.9403 -2.5621 22 6 0.6048 -7.4217 -4.5336 23 6 1.0699 -6.9269 -5.7726 24 7 1.1587 -7.9309 -6.6006 25 7 0.7600 -9.0989 -5.9411 26 1 0.7316 -9.9874 -6.3291 27 6 0.4281 -8.7831 -4.6790 28 6 1.8200 -3.6569 0.1716 29 1 -0.4850 0.8400 0.0004 30 1 -0.6716 -2.6593 -0.7472 31 1 0.0851 -1.3254 -1.6568 32 1 -0.3647 -3.3458 -3.0841 33 1 1.3622 -2.9221 -3.0091 34 1 4.1406 -4.0582 -1.1729 35 1 3.0434 -3.1720 -2.2595 36 1 3.7570 -6.1320 -2.4872 37 1 4.4076 -4.8298 -3.5115 38 1 2.1729 -4.3205 -4.3648 39 1 2.4802 -6.0624 -4.5707 40 1 1.3106 -5.8977 -5.9949 41 1 0.0841 -9.4679 -3.9181 42 1 1.0505 -4.0692 0.8244 43 1 2.7428 -3.5228 0.7360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021532166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:26 Heat of formation + Delta-G solvation = 46.458722 kcal Electronic energy + Delta-G solvation = -26027.541635 eV Core-core repulsion = 22495.040976 eV Total energy + Delta-G solvation = -3532.500660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.45277 -41.21632 -39.17794 -37.05728 -34.53910 -33.69512 -32.85356 -31.92066 -31.20808 -30.89540 -27.28388 -26.48296 -24.59864 -23.62212 -23.15853 -22.97780 -22.40158 -20.48761 -19.46421 -18.96022 -18.44902 -17.46701 -16.99661 -16.55466 -16.20536 -16.08600 -15.55590 -15.52221 -15.28188 -15.04470 -14.97990 -14.50673 -14.16528 -14.03595 -13.75431 -13.65544 -13.51886 -12.99238 -12.96503 -12.59516 -12.34003 -12.23329 -12.13321 -11.98547 -11.81670 -11.69243 -11.37953 -11.32873 -11.02252 -10.84648 -10.66167 -10.51017 -9.85805 -9.41998 -8.65969 -7.83072 -5.27603 0.62730 1.16230 1.50424 1.51657 1.60735 1.80049 2.06792 2.32842 2.54910 3.32492 3.53641 3.67546 3.83088 3.91763 3.99595 4.02014 4.14264 4.17266 4.31726 4.38668 4.46617 4.53435 4.62464 4.65318 4.76504 4.87176 4.91953 4.95557 4.98316 5.05304 5.12950 5.17902 5.27634 5.34997 5.40864 5.46603 5.66186 5.67762 5.69050 5.77068 6.24618 6.42281 6.49950 6.59782 7.17645 7.26083 7.88185 8.42218 9.23953 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.028590 B = 0.003742 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.121103 B = 7481.367600 C = 7616.211593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.600 5.600 10 C 0.181 3.819 11 C -0.129 4.129 12 C 0.164 3.836 13 H 0.064 0.936 14 C -0.096 4.096 15 H 0.069 0.931 16 C -0.102 4.102 17 C -0.124 4.124 18 C 0.098 3.902 19 N -0.597 5.597 20 C 0.590 3.410 21 O -0.597 6.597 22 C -0.312 4.312 23 C 0.086 3.914 24 N -0.315 5.315 25 N -0.448 5.448 26 H 0.460 0.540 27 C 0.141 3.859 28 C 0.149 3.851 29 H 0.248 0.752 30 H -0.012 1.012 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.207 0.793 41 H 0.213 0.787 42 H 0.003 0.997 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -17.908 -13.071 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.323 5.323 10 C 0.054 3.946 11 C -0.169 4.169 12 C 0.060 3.940 13 H 0.083 0.917 14 C -0.117 4.117 15 H 0.087 0.913 16 C -0.139 4.139 17 C -0.162 4.162 18 C -0.024 4.024 19 N -0.327 5.327 20 C 0.380 3.620 21 O -0.479 6.479 22 C -0.327 4.327 23 C -0.102 4.102 24 N -0.136 5.136 25 N -0.155 5.155 26 H 0.309 0.691 27 C -0.013 4.013 28 C 0.023 3.977 29 H 0.057 0.943 30 H 0.006 0.994 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.224 0.776 41 H 0.229 0.771 42 H 0.021 0.979 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.682 -18.298 -13.883 23.921 hybrid contribution -0.529 1.065 1.222 1.706 sum 6.152 -17.233 -12.661 22.251 Atomic orbital electron populations 1.70204 1.06768 1.25694 1.55758 1.25773 0.95916 1.01455 1.01571 0.85266 0.78237 0.79733 0.77308 1.21251 1.22744 1.19095 1.19513 0.93021 0.85654 1.40023 0.91109 1.44224 1.35324 1.01923 1.50841 1.20512 0.87674 0.97691 0.88680 1.22320 1.00953 0.94857 0.98792 1.20988 0.97313 0.88887 0.86785 0.91742 1.21652 0.95261 0.98667 0.96113 0.91292 1.21404 0.96331 0.99033 0.97177 1.21891 0.97773 0.99454 0.97051 1.22206 0.83688 1.02707 0.93811 1.48276 1.27218 1.26726 1.30500 1.17752 0.80527 0.79439 0.84284 1.90739 1.34240 1.70402 1.52481 1.20199 1.21615 0.94867 0.96024 1.24417 0.96064 0.99955 0.89730 1.77135 1.23386 0.91808 1.21297 1.46206 1.50371 1.10655 1.08296 0.69146 1.23323 0.93579 0.95861 0.88508 1.20920 0.97339 0.85905 0.93544 0.94261 0.99438 0.92023 0.92898 0.90854 0.91939 0.92272 0.91574 0.88503 0.90554 0.87262 0.77643 0.77073 0.97868 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.75 11.17 21.65 0.24 -55.50 16 2 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 3 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 4 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.25 -13.52 9.60 84.03 0.81 -12.71 16 8 H 0.07 3.67 7.89 -2.91 -0.02 3.64 16 9 N -0.60 -29.70 2.64 -700.06 -1.85 -31.55 16 10 C 0.18 8.89 5.34 86.32 0.46 9.35 16 11 C -0.13 -4.99 5.02 30.68 0.15 -4.83 16 12 C 0.16 5.82 2.64 44.90 0.12 5.94 16 13 H 0.06 2.70 7.11 -2.39 -0.02 2.69 16 14 C -0.10 -3.25 2.45 -10.87 -0.03 -3.28 16 15 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 16 C -0.10 -2.94 4.86 30.58 0.15 -2.79 16 17 C -0.12 -2.58 6.08 30.68 0.19 -2.39 16 18 C 0.10 2.05 4.82 86.34 0.42 2.47 16 19 N -0.60 -17.10 2.67 -797.36 -2.13 -19.23 16 20 C 0.59 17.79 7.61 86.66 0.66 18.45 16 21 O -0.60 -23.03 16.54 -4.04 -0.07 -23.10 16 22 C -0.31 -6.85 5.40 -20.15 -0.11 -6.96 16 23 C 0.09 1.60 9.58 85.65 0.82 2.42 16 24 N -0.31 -5.72 12.63 -56.28 -0.71 -6.43 16 25 N -0.45 -5.61 7.29 -56.31 -0.41 -6.02 16 26 H 0.46 2.22 8.96 -213.43 -1.91 0.30 16 27 C 0.14 2.19 11.97 84.28 1.01 3.20 16 28 C 0.15 6.23 5.90 86.22 0.51 6.74 16 29 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 30 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.06 3.40 6.00 -2.38 -0.01 3.38 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.68 5.32 -2.39 -0.01 2.67 16 34 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.06 2.00 6.15 -2.39 -0.01 1.98 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.54 7.25 -2.39 -0.02 1.52 16 39 H 0.11 1.82 4.48 -2.38 -0.01 1.80 16 40 H 0.21 3.03 6.87 -2.91 -0.02 3.01 16 41 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -73.15 331.38 1.81 -71.35 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -0.87 Total: 10.91 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.57 Total: 13.14 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -4.86 Total: -118.74 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.10 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.15 1.81 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021532166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.804 kcal (2) G-P(sol) polarization free energy of solvation -73.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds