Wall clock time and date at job start Fri Apr 10 2020 17:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48506 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47183 * 299.99644 * 3 2 1 6 6 H 1.48500 * 109.46952 * 60.00019 * 3 2 1 7 7 C 1.38812 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00486 * 187.08576 * 7 2 1 9 9 N 1.36940 * 119.99663 * 7.07623 * 7 2 1 10 10 C 1.46981 * 120.77397 * 218.76214 * 9 7 2 11 11 C 1.53090 * 108.61270 * 234.34499 * 10 9 7 12 12 C 1.53647 * 109.52283 * 304.74594 * 11 10 9 13 13 H 1.08996 * 110.78393 * 299.04208 * 12 11 10 14 14 C 1.52706 * 109.56623 * 60.55709 * 12 11 10 15 15 H 1.09001 * 108.45240 * 180.81710 * 14 12 11 16 16 C 1.52857 * 109.44063 * 61.70963 * 14 12 11 17 17 C 1.53113 * 109.34898 * 61.89433 * 16 14 12 18 18 C 1.53152 * 109.47582 * 299.34847 * 17 16 14 19 19 N 1.46944 * 109.02224 * 54.07922 * 18 17 16 20 20 C 1.34781 * 120.84197 * 125.94759 * 19 18 17 21 21 O 1.21609 * 119.99741 * 187.16845 * 20 19 18 22 22 C 1.47397 * 120.00088 * 7.17565 * 20 19 18 23 23 N 1.31621 * 125.86859 * 7.02310 * 22 20 19 24 24 C 1.33095 * 109.10069 * 180.26466 * 23 22 20 25 25 C 1.35565 * 108.34767 * 359.97438 * 24 23 22 26 26 N 1.35398 * 107.16361 * 0.02562 * 25 24 23 27 27 H 0.97003 * 126.44205 * 180.02562 * 26 25 24 28 28 C 1.46891 * 120.77431 * 38.78597 * 9 7 2 29 29 H 0.96995 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.61260 * 354.08136 * 10 9 7 31 31 H 1.08994 * 109.60986 * 114.60413 * 10 9 7 32 32 H 1.09004 * 109.45672 * 64.69084 * 11 10 9 33 33 H 1.09004 * 109.44855 * 184.64082 * 11 10 9 34 34 H 1.09000 * 109.49161 * 301.93341 * 16 14 12 35 35 H 1.09004 * 109.48746 * 181.85612 * 16 14 12 36 36 H 1.09000 * 109.46871 * 179.34723 * 17 16 14 37 37 H 1.08995 * 109.47204 * 59.34984 * 17 16 14 38 38 H 1.08997 * 109.54450 * 294.21361 * 18 17 16 39 39 H 1.09002 * 109.54119 * 173.94264 * 18 17 16 40 40 H 1.08000 * 125.82806 * 180.02562 * 24 23 22 41 41 H 1.08004 * 126.41647 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.51551 * 6.72078 * 28 9 7 43 43 H 1.08993 * 109.56088 * 246.57305 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0841 -1.2058 0.1148 9 7 1.3335 -2.3835 -0.1472 10 6 1.7269 -3.5755 0.6173 11 6 1.9712 -4.7259 -0.3627 12 6 0.7216 -4.9337 -1.2323 13 1 -0.1395 -5.1928 -0.6164 14 6 0.4324 -3.6606 -2.0244 15 1 -0.4642 -3.8228 -2.6228 16 6 1.6097 -3.3598 -2.9518 17 6 1.7766 -4.5096 -3.9490 18 6 2.0603 -5.8082 -3.1883 19 7 1.0041 -6.0181 -2.1885 20 6 0.3075 -7.1713 -2.1509 21 8 -0.6476 -7.2808 -1.4061 22 6 0.7034 -8.2999 -3.0124 23 7 1.7850 -8.3568 -3.7603 24 6 1.8096 -9.5222 -4.4026 25 6 0.7070 -10.2274 -4.0495 26 7 0.0076 -9.4648 -3.1763 27 1 -0.8296 -9.7010 -2.7471 28 6 0.1976 -2.4890 -1.0725 29 1 -0.4850 0.8400 -0.0004 30 1 2.6412 -3.3683 1.1734 31 1 0.9289 -3.8468 1.3084 32 1 2.8209 -4.4845 -1.0014 33 1 2.1836 -5.6385 0.1944 34 1 2.5201 -3.2553 -2.3615 35 1 1.4185 -2.4334 -3.4934 36 1 2.6085 -4.2917 -4.6188 37 1 0.8617 -4.6218 -4.5306 38 1 3.0261 -5.7344 -2.6885 39 1 2.0727 -6.6448 -3.8869 40 1 2.5774 -9.8504 -5.0876 41 1 0.4371 -11.2130 -4.3991 42 1 0.1081 -1.5664 -1.6459 43 1 -0.7191 -2.6570 -0.5074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021578384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:34 Heat of formation + Delta-G solvation = 56.806980 kcal Electronic energy + Delta-G solvation = -26088.759100 eV Core-core repulsion = 22556.707174 eV Total energy + Delta-G solvation = -3532.051925 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.47341 -40.06115 -37.91562 -35.51816 -33.21588 -32.45226 -32.37137 -30.43827 -29.88470 -29.14160 -25.45667 -25.29869 -23.32370 -22.25036 -21.88005 -21.68201 -21.21270 -20.12355 -18.04200 -17.65852 -16.71992 -16.50328 -15.76603 -15.56721 -15.02423 -14.54075 -14.35795 -14.18398 -14.08949 -13.83039 -13.42421 -13.39533 -12.95418 -12.66859 -12.48338 -12.31268 -12.07960 -11.48048 -11.22837 -10.96626 -10.79212 -10.60088 -10.53838 -10.42814 -10.24366 -10.11479 -9.99701 -9.94028 -9.70922 -9.48648 -9.25149 -8.86970 -8.47128 -8.20816 -6.47205 -5.77537 -3.32505 1.23012 2.42644 2.46221 3.34639 3.36776 3.40507 3.45239 3.47000 4.14996 4.49615 4.66200 4.94475 5.11451 5.21866 5.35938 5.41178 5.49175 5.50651 5.55920 5.62683 5.69010 5.91025 5.94677 6.05038 6.14085 6.27865 6.31430 6.39465 6.47417 6.52206 6.55467 6.62861 6.76245 6.84269 6.89332 6.99044 7.03608 7.11465 7.34482 7.47730 7.62195 7.69430 7.83560 8.19377 8.54554 9.25479 9.83877 10.48405 11.30560 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.003716 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.804255 B = 7534.082970 C = 7813.344885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.013 3.987 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.587 5.587 10 C 0.148 3.852 11 C -0.140 4.140 12 C 0.154 3.846 13 H 0.095 0.905 14 C -0.115 4.115 15 H 0.055 0.945 16 C -0.105 4.105 17 C -0.134 4.134 18 C 0.076 3.924 19 N -0.574 5.574 20 C 0.596 3.404 21 O -0.551 6.551 22 C 0.160 3.840 23 N -0.440 5.440 24 C -0.032 4.032 25 C -0.030 4.030 26 N -0.526 5.526 27 H 0.430 0.570 28 C 0.184 3.816 29 H 0.254 0.746 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.081 0.919 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 -18.633 -9.860 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.078 0.922 9 N -0.309 5.309 10 C 0.021 3.979 11 C -0.180 4.180 12 C 0.053 3.947 13 H 0.113 0.887 14 C -0.136 4.136 15 H 0.073 0.927 16 C -0.142 4.142 17 C -0.172 4.172 18 C -0.046 4.046 19 N -0.304 5.304 20 C 0.381 3.619 21 O -0.428 6.428 22 C -0.101 4.101 23 N -0.163 5.163 24 C -0.184 4.184 25 C -0.169 4.169 26 N -0.127 5.127 27 H 0.270 0.730 28 C 0.057 3.943 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.152 0.848 40 H 0.195 0.805 41 H 0.202 0.798 42 H 0.100 0.900 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 2.196 -17.862 -9.481 20.341 hybrid contribution -0.565 0.011 0.105 0.575 sum 1.631 -17.850 -9.377 20.229 Atomic orbital electron populations 1.69970 1.05362 1.25460 1.53456 1.25365 0.95359 0.98472 0.99491 0.86260 0.79473 0.84001 0.77247 1.20139 1.21594 1.21619 1.19091 0.90071 0.83328 1.46064 0.92153 1.43895 1.35995 1.06851 1.44194 1.20892 0.98115 0.86906 0.92022 1.22506 0.97372 0.99308 0.98830 1.21509 0.98833 0.84942 0.89403 0.88710 1.21971 0.97563 0.96222 0.97866 0.92658 1.21462 0.99750 0.96623 0.96395 1.21972 1.01343 0.95558 0.98305 1.22689 0.89565 1.00655 0.91736 1.48247 1.35476 1.13777 1.32920 1.16596 0.82656 0.81212 0.81439 1.90823 1.27819 1.82460 1.41748 1.22937 0.92439 0.90322 1.04435 1.70047 1.17544 1.20145 1.08554 1.22621 0.99558 0.91790 1.04450 1.22951 0.96187 0.99658 0.98141 1.42976 1.21649 1.14128 1.33964 0.73043 1.20604 0.89418 0.94391 0.89852 0.93622 0.92400 0.96261 0.91406 0.93161 0.90583 0.92218 0.91345 0.92608 0.91670 0.84782 0.80470 0.79787 0.90048 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.44 55.49 0.64 -25.26 16 2 C 0.01 0.36 5.09 -17.43 -0.09 0.27 16 3 Si 0.90 21.44 29.56 -169.99 -5.02 16.42 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.26 -6.86 9.51 -15.06 -0.14 -7.00 16 8 H 0.06 1.61 7.84 -52.49 -0.41 1.20 16 9 N -0.59 -14.39 2.59 -172.63 -0.45 -14.84 16 10 C 0.15 3.13 6.52 -3.73 -0.02 3.11 16 11 C -0.14 -2.56 5.03 -26.35 -0.13 -2.69 16 12 C 0.15 2.85 2.67 -67.31 -0.18 2.67 16 13 H 0.09 1.93 7.06 -51.93 -0.37 1.56 16 14 C -0.12 -2.23 2.43 -90.96 -0.22 -2.45 16 15 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.10 -1.85 4.86 -26.75 -0.13 -1.98 16 17 C -0.13 -1.94 6.08 -26.59 -0.16 -2.10 16 18 C 0.08 1.10 5.61 -3.72 -0.02 1.08 16 19 N -0.57 -9.43 2.66 -166.12 -0.44 -9.87 16 20 C 0.60 9.82 7.69 -12.53 -0.10 9.72 16 21 O -0.55 -10.36 16.56 5.27 0.09 -10.27 16 22 C 0.16 2.15 7.67 -154.52 -1.19 0.97 16 23 N -0.44 -5.52 7.68 -11.26 -0.09 -5.61 16 24 C -0.03 -0.29 11.85 -17.96 -0.21 -0.51 16 25 C -0.03 -0.23 12.00 -16.93 -0.20 -0.43 16 26 N -0.53 -5.15 6.15 -10.78 -0.07 -5.22 16 27 H 0.43 3.39 8.96 -40.82 -0.37 3.03 16 28 C 0.18 4.34 4.60 -3.95 -0.02 4.32 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.23 5.33 -51.93 -0.28 0.96 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.46 6.15 -51.93 -0.32 1.14 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.95 7.25 -51.93 -0.38 0.57 16 39 H 0.14 1.86 4.17 -60.75 -0.25 1.60 16 40 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.19 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.08 2.13 6.60 -51.93 -0.34 1.79 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -31.69 332.28 -9.22 -40.91 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.06 Total: 3.77 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.82 Total: 4.97 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.41 Total: -60.80 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.69 -9.22 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021578384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.716 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds