Wall clock time and date at job start Fri Apr 10 2020 17:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48506 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47183 * 299.99644 * 3 2 1 6 6 H 1.48500 * 109.46952 * 60.00019 * 3 2 1 7 7 C 1.38812 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00486 * 187.08576 * 7 2 1 9 9 N 1.36940 * 119.99663 * 7.07623 * 7 2 1 10 10 C 1.46981 * 120.77397 * 218.76214 * 9 7 2 11 11 C 1.53090 * 108.61270 * 234.34499 * 10 9 7 12 12 C 1.53647 * 109.52283 * 304.74594 * 11 10 9 13 13 H 1.08996 * 110.78393 * 299.04208 * 12 11 10 14 14 C 1.52706 * 109.56623 * 60.55709 * 12 11 10 15 15 H 1.09001 * 108.45240 * 180.81710 * 14 12 11 16 16 C 1.52857 * 109.44063 * 61.70963 * 14 12 11 17 17 C 1.53113 * 109.34898 * 61.89433 * 16 14 12 18 18 C 1.53152 * 109.47582 * 299.34847 * 17 16 14 19 19 N 1.46944 * 109.02224 * 54.07922 * 18 17 16 20 20 C 1.34781 * 120.84197 * 125.94759 * 19 18 17 21 21 O 1.21609 * 119.99741 * 187.16845 * 20 19 18 22 22 C 1.47397 * 120.00088 * 7.17565 * 20 19 18 23 23 N 1.31621 * 125.86859 * 7.02310 * 22 20 19 24 24 C 1.33095 * 109.10069 * 180.26466 * 23 22 20 25 25 C 1.35565 * 108.34767 * 359.97438 * 24 23 22 26 26 N 1.35398 * 107.16361 * 0.02562 * 25 24 23 27 27 H 0.97003 * 126.44205 * 180.02562 * 26 25 24 28 28 C 1.46891 * 120.77431 * 38.78597 * 9 7 2 29 29 H 0.96995 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.61260 * 354.08136 * 10 9 7 31 31 H 1.08994 * 109.60986 * 114.60413 * 10 9 7 32 32 H 1.09004 * 109.45672 * 64.69084 * 11 10 9 33 33 H 1.09004 * 109.44855 * 184.64082 * 11 10 9 34 34 H 1.09000 * 109.49161 * 301.93341 * 16 14 12 35 35 H 1.09004 * 109.48746 * 181.85612 * 16 14 12 36 36 H 1.09000 * 109.46871 * 179.34723 * 17 16 14 37 37 H 1.08995 * 109.47204 * 59.34984 * 17 16 14 38 38 H 1.08997 * 109.54450 * 294.21361 * 18 17 16 39 39 H 1.09002 * 109.54119 * 173.94264 * 18 17 16 40 40 H 1.08000 * 125.82806 * 180.02562 * 24 23 22 41 41 H 1.08004 * 126.41647 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.51551 * 6.72078 * 28 9 7 43 43 H 1.08993 * 109.56088 * 246.57305 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0841 -1.2058 0.1148 9 7 1.3335 -2.3835 -0.1472 10 6 1.7269 -3.5755 0.6173 11 6 1.9712 -4.7259 -0.3627 12 6 0.7216 -4.9337 -1.2323 13 1 -0.1395 -5.1928 -0.6164 14 6 0.4324 -3.6606 -2.0244 15 1 -0.4642 -3.8228 -2.6228 16 6 1.6097 -3.3598 -2.9518 17 6 1.7766 -4.5096 -3.9490 18 6 2.0603 -5.8082 -3.1883 19 7 1.0041 -6.0181 -2.1885 20 6 0.3075 -7.1713 -2.1509 21 8 -0.6476 -7.2808 -1.4061 22 6 0.7034 -8.2999 -3.0124 23 7 1.7850 -8.3568 -3.7603 24 6 1.8096 -9.5222 -4.4026 25 6 0.7070 -10.2274 -4.0495 26 7 0.0076 -9.4648 -3.1763 27 1 -0.8296 -9.7010 -2.7471 28 6 0.1976 -2.4890 -1.0725 29 1 -0.4850 0.8400 -0.0004 30 1 2.6412 -3.3683 1.1734 31 1 0.9289 -3.8468 1.3084 32 1 2.8209 -4.4845 -1.0014 33 1 2.1836 -5.6385 0.1944 34 1 2.5201 -3.2553 -2.3615 35 1 1.4185 -2.4334 -3.4934 36 1 2.6085 -4.2917 -4.6188 37 1 0.8617 -4.6218 -4.5306 38 1 3.0261 -5.7344 -2.6885 39 1 2.0727 -6.6448 -3.8869 40 1 2.5774 -9.8504 -5.0876 41 1 0.4371 -11.2130 -4.3991 42 1 0.1081 -1.5664 -1.6459 43 1 -0.7191 -2.6570 -0.5074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021578384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:33 Heat of formation + Delta-G solvation = 37.285235 kcal Electronic energy + Delta-G solvation = -26089.605626 eV Core-core repulsion = 22556.707174 eV Total energy + Delta-G solvation = -3532.898452 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.27687 -41.43403 -39.36390 -37.12129 -34.54530 -34.05407 -33.52791 -31.99453 -31.30819 -30.41262 -27.27567 -26.64248 -24.76444 -23.63384 -23.36627 -22.73774 -22.42162 -21.22664 -19.59618 -18.83277 -18.46089 -17.76133 -16.96562 -16.85520 -16.68157 -16.05342 -15.65160 -15.40179 -15.13507 -15.03509 -14.90831 -14.71933 -14.46095 -14.13508 -14.00313 -13.79886 -13.55255 -13.19362 -12.87010 -12.66530 -12.62116 -12.28745 -12.04266 -11.93250 -11.75935 -11.54836 -11.41456 -11.36505 -11.32379 -11.07984 -10.55301 -10.43098 -9.76995 -9.41464 -8.51478 -7.85885 -5.45085 0.31567 1.46575 1.48821 1.49711 1.59520 1.65168 2.30995 2.43646 2.51052 3.18144 3.31572 3.64112 3.75325 3.93619 3.98705 4.07189 4.16597 4.25092 4.37597 4.39639 4.48766 4.51633 4.61644 4.70120 4.76335 4.90772 4.95021 4.97938 5.06526 5.11182 5.14485 5.17839 5.22107 5.33220 5.42819 5.52732 5.59907 5.67813 5.68792 5.83929 6.17817 6.33803 6.46345 6.73288 7.02505 7.18148 7.82519 8.43377 9.20272 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.003716 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.804255 B = 7534.082970 C = 7813.344885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.040 4.040 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.600 5.600 10 C 0.145 3.855 11 C -0.123 4.123 12 C 0.162 3.838 13 H 0.070 0.930 14 C -0.105 4.105 15 H 0.053 0.947 16 C -0.097 4.097 17 C -0.123 4.123 18 C 0.080 3.920 19 N -0.578 5.578 20 C 0.593 3.407 21 O -0.587 6.587 22 C 0.114 3.886 23 N -0.450 5.450 24 C -0.049 4.049 25 C 0.006 3.994 26 N -0.519 5.519 27 H 0.437 0.563 28 C 0.196 3.804 29 H 0.250 0.750 30 H 0.064 0.936 31 H 0.008 0.992 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.150 0.850 40 H 0.208 0.792 41 H 0.235 0.765 42 H 0.050 0.950 43 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 -21.284 -11.905 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.237 4.237 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.323 5.323 10 C 0.019 3.981 11 C -0.163 4.163 12 C 0.059 3.941 13 H 0.088 0.912 14 C -0.126 4.126 15 H 0.071 0.929 16 C -0.135 4.135 17 C -0.161 4.161 18 C -0.042 4.042 19 N -0.307 5.307 20 C 0.381 3.619 21 O -0.467 6.467 22 C -0.145 4.145 23 N -0.174 5.174 24 C -0.201 4.201 25 C -0.134 4.134 26 N -0.121 5.121 27 H 0.278 0.722 28 C 0.070 3.930 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.026 0.974 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.166 0.834 40 H 0.225 0.775 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 4.110 -20.530 -11.525 23.900 hybrid contribution -1.171 0.659 0.702 1.516 sum 2.940 -19.871 -10.823 22.818 Atomic orbital electron populations 1.70141 1.06905 1.25855 1.55020 1.26113 0.96071 1.01733 0.99746 0.85221 0.78855 0.79779 0.76673 1.18700 1.21688 1.22013 1.19401 0.90448 0.84263 1.45031 0.91775 1.44081 1.35820 1.07395 1.45044 1.20985 0.97815 0.86787 0.92490 1.22293 0.97316 0.98500 0.98190 1.21135 0.98070 0.85272 0.89621 0.91162 1.21744 0.98557 0.95034 0.97264 0.92889 1.21359 0.97891 0.97760 0.96453 1.21918 1.02562 0.94017 0.97644 1.22832 0.88882 1.00997 0.91468 1.48157 1.36170 1.13407 1.32964 1.16980 0.81843 0.81806 0.81294 1.90789 1.29355 1.83202 1.43390 1.22155 0.94444 0.91054 1.06819 1.69846 1.17117 1.21987 1.08458 1.23271 1.01106 0.90920 1.04837 1.23822 0.94276 1.00334 0.94941 1.43071 1.21798 1.13316 1.33918 0.72190 1.20305 0.88159 0.94760 0.89797 0.94103 0.91775 0.97386 0.90699 0.91548 0.91818 0.93237 0.88627 0.92473 0.91371 0.83363 0.77486 0.74910 0.93101 0.99372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 11.44 21.65 0.25 -55.74 16 2 C -0.04 -2.26 5.09 84.86 0.43 -1.82 16 3 Si 0.97 44.80 29.56 68.60 2.03 46.83 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.26 -14.27 9.51 84.03 0.80 -13.47 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 9 N -0.60 -30.47 2.59 -700.08 -1.81 -32.28 16 10 C 0.15 6.31 6.52 86.32 0.56 6.87 16 11 C -0.12 -4.49 5.03 30.84 0.16 -4.33 16 12 C 0.16 6.12 2.67 44.96 0.12 6.24 16 13 H 0.07 3.01 7.06 -2.39 -0.02 2.99 16 14 C -0.11 -4.22 2.43 -11.02 -0.03 -4.25 16 15 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.10 -3.43 4.86 30.58 0.15 -3.28 16 17 C -0.12 -3.37 6.08 30.68 0.19 -3.18 16 18 C 0.08 2.17 5.61 86.35 0.48 2.65 16 19 N -0.58 -18.80 2.66 -797.72 -2.12 -20.92 16 20 C 0.59 19.47 7.69 86.65 0.67 20.14 16 21 O -0.59 -22.65 16.56 -4.06 -0.07 -22.71 16 22 C 0.11 2.86 7.67 136.27 1.05 3.91 16 23 N -0.45 -10.04 7.68 -189.53 -1.45 -11.50 16 24 C -0.05 -0.69 11.85 83.88 0.99 0.30 16 25 C 0.01 0.06 12.00 83.52 1.00 1.06 16 26 N -0.52 -8.74 6.15 -188.02 -1.16 -9.89 16 27 H 0.44 5.97 8.96 -92.71 -0.83 5.13 16 28 C 0.20 9.81 4.60 86.23 0.40 10.21 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.06 2.67 7.94 -2.39 -0.02 2.65 16 31 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 2.65 5.33 -2.39 -0.01 2.64 16 33 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.06 2.42 6.15 -2.39 -0.01 2.40 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.83 7.25 -2.39 -0.02 1.81 16 39 H 0.15 3.76 4.17 -19.80 -0.08 3.67 16 40 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.23 -0.09 8.06 -2.91 -0.02 -0.11 16 42 H 0.05 2.82 6.60 -2.39 -0.02 2.81 16 43 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 Total: -1.00 -72.32 332.28 2.76 -69.56 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.13 Total: 15.60 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 6.97 Total: 21.05 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -6.30 Total: -130.33 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.07 Total: -22.71 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.32 2.76 -69.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021578384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.844 kcal (2) G-P(sol) polarization free energy of solvation -72.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds