Wall clock time and date at job start Fri Apr 10 2020 17:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46684 * 270.00021 * 3 2 1 5 5 H 1.48500 * 109.47059 * 29.99646 * 3 2 1 6 6 H 1.48494 * 109.47062 * 149.99851 * 3 2 1 7 7 C 1.38813 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00404 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99758 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99940 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.84866 * 23.80887 * 10 9 7 12 12 C 1.53787 * 113.61128 * 155.00138 * 10 9 7 13 13 C 1.53784 * 87.07923 * 139.98386 * 12 10 9 14 14 H 1.09002 * 113.61478 * 89.11632 * 13 12 10 15 15 N 1.46497 * 113.61569 * 220.01663 * 13 12 10 16 16 C 1.34769 * 120.00274 * 204.99925 * 15 13 12 17 17 O 1.21283 * 120.00052 * 0.02562 * 16 15 13 18 18 C 1.50706 * 119.99945 * 179.97438 * 16 15 13 19 19 H 1.08997 * 109.49415 * 60.00684 * 18 16 15 20 20 C 1.53113 * 109.49661 * 180.02562 * 18 16 15 21 21 C 1.53282 * 109.70649 * 189.86288 * 20 18 16 22 22 N 1.46468 * 108.69473 * 309.23698 * 21 20 18 23 23 C 1.34413 * 128.44584 * 197.30396 * 22 21 20 24 24 N 1.30777 * 108.55101 * 179.85742 * 23 22 21 25 25 C 1.34417 * 109.32567 * 0.05282 * 24 23 22 26 26 C 1.33861 * 107.80044 * 359.97438 * 25 24 23 27 27 C 1.50724 * 128.67471 * 179.81318 * 26 25 24 28 28 C 1.53779 * 87.08045 * 334.56667 * 13 12 10 29 29 H 0.97000 * 120.00182 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99931 * 0.02562 * 9 7 2 31 31 H 1.09004 * 113.61202 * 254.53139 * 12 10 9 32 32 H 1.08994 * 113.61447 * 25.43570 * 12 10 9 33 33 H 0.97009 * 119.99534 * 24.99936 * 15 13 12 34 34 H 1.09003 * 109.43835 * 309.93788 * 20 18 16 35 35 H 1.09000 * 109.43375 * 69.79352 * 20 18 16 36 36 H 1.08997 * 109.59840 * 68.99832 * 21 20 18 37 37 H 1.09007 * 109.60069 * 189.47210 * 21 20 18 38 38 H 1.08001 * 125.72169 * 359.83757 * 23 22 21 39 39 H 1.08002 * 126.10179 * 179.97438 * 25 24 23 40 40 H 1.09005 * 109.71709 * 76.17409 * 27 26 25 41 41 H 1.08993 * 109.77809 * 315.44829 * 27 26 25 42 42 H 1.09006 * 113.61307 * 270.88660 * 28 13 12 43 43 H 1.08999 * 113.69146 * 139.99146 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5280 -3.2972 -0.4030 12 6 5.5263 -2.3662 -0.5928 13 6 5.9843 -3.3090 0.5325 14 1 5.9126 -4.3653 0.2734 15 7 7.2833 -2.9497 1.1068 16 6 8.0406 -3.8920 1.7025 17 8 7.6469 -5.0376 1.7627 18 6 9.3771 -3.5225 2.2928 19 1 9.2366 -2.7692 3.0680 20 6 10.0281 -4.7669 2.9026 21 6 11.2622 -4.3591 3.7150 22 7 12.1097 -3.5018 2.8831 23 6 13.4033 -3.1819 3.0591 24 7 13.7731 -2.3930 2.0838 25 6 12.7314 -2.1853 1.2602 26 6 11.6860 -2.8683 1.7424 27 6 10.2866 -2.9621 1.1904 28 6 4.7866 -2.7917 1.3464 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0014 31 1 5.6141 -2.8001 -1.5889 32 1 5.9550 -1.3663 -0.5263 33 1 7.5983 -2.0335 1.0583 34 1 9.3130 -5.2672 3.5558 35 1 10.3274 -5.4473 2.1053 36 1 10.9500 -3.8120 4.6045 37 1 11.8183 -5.2499 4.0073 38 1 14.0316 -3.5195 3.8700 39 1 12.7368 -1.5761 0.3684 40 1 10.2753 -3.6288 0.3281 41 1 9.9393 -1.9719 0.8956 42 1 5.0132 -1.9080 1.9431 43 1 4.2764 -3.5680 1.9166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022302492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:08 Heat of formation + Delta-G solvation = 55.436092 kcal Electronic energy + Delta-G solvation = -24220.726392 eV Core-core repulsion = 20688.615020 eV Total energy + Delta-G solvation = -3532.111372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.68438 -40.27359 -38.42426 -36.50494 -34.36345 -33.58949 -32.59486 -30.87089 -30.51594 -28.40293 -25.36077 -25.31037 -24.63704 -23.27513 -21.89781 -21.58504 -20.52938 -19.70513 -19.35982 -17.66371 -17.54140 -17.15860 -16.47507 -16.03364 -15.48996 -14.88502 -14.68043 -14.48823 -14.34579 -14.15798 -14.12401 -13.78463 -13.50242 -13.33201 -12.74965 -12.53788 -12.34142 -12.21218 -12.12050 -11.83947 -11.65659 -11.50794 -11.08867 -10.87355 -10.56522 -10.41006 -10.29154 -10.16012 -9.86769 -9.81187 -9.63117 -9.02672 -8.91863 -8.67701 -7.34589 -5.84020 -3.20492 1.70907 2.39718 2.43122 2.85511 3.00696 3.30595 3.33172 3.39781 3.92630 4.10239 4.14144 4.29611 4.42629 4.51695 4.61249 4.67200 4.75110 4.82383 4.98362 5.01350 5.03243 5.15564 5.20834 5.25921 5.35328 5.38300 5.49890 5.55288 5.63432 5.70398 5.93299 6.00904 6.03421 6.11150 6.27526 6.40801 6.45584 6.54400 6.85979 6.86150 7.41209 7.74851 7.91775 8.07255 8.35328 9.12358 9.84617 10.03673 11.34062 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.002623 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.629650 B =10672.243439 C =11340.960761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.089 0.911 12 C -0.162 4.162 13 C 0.117 3.883 14 H 0.112 0.888 15 N -0.712 5.712 16 C 0.519 3.481 17 O -0.540 6.540 18 C -0.113 4.113 19 H 0.102 0.898 20 C -0.114 4.114 21 C 0.103 3.897 22 N -0.456 5.456 23 C 0.183 3.817 24 N -0.497 5.497 25 C -0.021 4.021 26 C -0.022 4.022 27 C -0.035 4.035 28 C -0.176 4.176 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.204 0.796 39 H 0.170 0.830 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.706 -7.886 6.229 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.063 3.937 11 H 0.107 0.893 12 C -0.202 4.202 13 C 0.013 3.987 14 H 0.130 0.870 15 N -0.361 5.361 16 C 0.304 3.696 17 O -0.417 6.417 18 C -0.135 4.135 19 H 0.120 0.880 20 C -0.152 4.152 21 C -0.019 4.019 22 N -0.140 5.140 23 C -0.099 4.099 24 N -0.215 5.215 25 C -0.169 4.169 26 C -0.137 4.137 27 C -0.074 4.074 28 C -0.219 4.219 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.234 0.766 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.221 0.779 39 H 0.187 0.813 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 25.831 -8.520 6.261 27.911 hybrid contribution -0.038 1.410 0.304 1.443 sum 25.793 -7.110 6.565 27.549 Atomic orbital electron populations 1.69700 1.05130 1.25935 1.57079 1.24708 0.95268 0.97287 1.01808 0.86543 0.79125 0.84963 0.77795 1.20989 1.21676 1.20425 1.19138 0.80578 0.94853 1.43438 0.89030 1.42703 1.04124 1.01784 1.88774 1.21329 0.89306 0.90372 0.92709 0.89338 1.23891 0.99256 0.99129 0.97894 1.22511 0.80808 1.00045 0.95360 0.86993 1.46061 1.20125 1.11807 1.58114 1.20319 0.85554 0.85567 0.78120 1.90711 1.73226 1.19778 1.57994 1.21454 0.93134 0.99660 0.99223 0.88010 1.21690 0.95586 0.97043 1.00915 1.22078 0.91711 0.94445 0.93689 1.45490 1.10859 1.36964 1.20720 1.24810 0.83288 1.00387 1.01437 1.70504 1.29886 1.16767 1.04373 1.21858 0.88795 1.04456 1.01781 1.21011 0.97877 1.03013 0.91781 1.20184 0.87500 1.02786 0.96916 1.24306 0.96238 1.00902 1.00416 0.92959 0.80475 0.91048 0.90159 0.76622 0.88191 0.90034 0.89402 0.88532 0.77912 0.81300 0.89312 0.88805 0.90346 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.89 21.42 27.74 -169.99 -4.71 16.71 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.73 -16.47 5.20 -52.64 -0.27 -16.74 16 10 C 0.17 3.10 4.48 -67.12 -0.30 2.80 16 11 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 12 C -0.16 -2.19 7.58 -25.91 -0.20 -2.39 16 13 C 0.12 1.52 4.24 -67.12 -0.28 1.23 16 14 H 0.11 1.55 7.47 -51.93 -0.39 1.16 16 15 N -0.71 -7.38 5.26 -53.02 -0.28 -7.66 16 16 C 0.52 5.61 7.13 -10.99 -0.08 5.53 16 17 O -0.54 -7.90 15.42 5.55 0.09 -7.82 16 18 C -0.11 -0.84 2.55 -91.45 -0.23 -1.08 16 19 H 0.10 0.68 8.12 -51.93 -0.42 0.26 16 20 C -0.11 -0.78 4.66 -26.53 -0.12 -0.90 16 21 C 0.10 0.52 7.00 -3.91 -0.03 0.49 16 22 N -0.46 -3.49 3.13 -114.08 -0.36 -3.85 16 23 C 0.18 1.52 12.66 -90.71 -1.15 0.37 16 24 N -0.50 -5.55 11.27 -14.87 -0.17 -5.72 16 25 C -0.02 -0.21 11.84 -17.96 -0.21 -0.43 16 26 C -0.02 -0.19 6.57 -81.72 -0.54 -0.73 16 27 C -0.04 -0.24 5.45 -27.61 -0.15 -0.39 16 28 C -0.18 -2.77 7.68 -25.92 -0.20 -2.97 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.36 7.91 5.78 -40.82 -0.24 7.67 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.40 3.23 8.45 -40.82 -0.34 2.89 16 34 H 0.10 0.72 7.77 -51.93 -0.40 0.31 16 35 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.09 0.65 8.11 -51.93 -0.42 0.23 16 41 H 0.09 0.51 7.95 -51.93 -0.41 0.10 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -34.99 351.66 -9.82 -44.81 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.44 Total: 8.36 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -3.74 Total: -5.41 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.30 Total: -61.95 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.99 -9.82 -44.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022302492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.242 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds