Wall clock time and date at job start Fri Apr 10 2020 17:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46684 * 270.00021 * 3 2 1 5 5 H 1.48500 * 109.47059 * 29.99646 * 3 2 1 6 6 H 1.48494 * 109.47062 * 149.99851 * 3 2 1 7 7 C 1.38813 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00404 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99758 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99940 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.84866 * 23.80887 * 10 9 7 12 12 C 1.53787 * 113.61128 * 155.00138 * 10 9 7 13 13 C 1.53784 * 87.07923 * 139.98386 * 12 10 9 14 14 H 1.09002 * 113.61478 * 89.11632 * 13 12 10 15 15 N 1.46497 * 113.61569 * 220.01663 * 13 12 10 16 16 C 1.34769 * 120.00274 * 204.99925 * 15 13 12 17 17 O 1.21283 * 120.00052 * 0.02562 * 16 15 13 18 18 C 1.50706 * 119.99945 * 179.97438 * 16 15 13 19 19 H 1.08997 * 109.49415 * 60.00684 * 18 16 15 20 20 C 1.53113 * 109.49661 * 180.02562 * 18 16 15 21 21 C 1.53282 * 109.70649 * 189.86288 * 20 18 16 22 22 N 1.46468 * 108.69473 * 309.23698 * 21 20 18 23 23 C 1.34413 * 128.44584 * 197.30396 * 22 21 20 24 24 N 1.30777 * 108.55101 * 179.85742 * 23 22 21 25 25 C 1.34417 * 109.32567 * 0.05282 * 24 23 22 26 26 C 1.33861 * 107.80044 * 359.97438 * 25 24 23 27 27 C 1.50724 * 128.67471 * 179.81318 * 26 25 24 28 28 C 1.53779 * 87.08045 * 334.56667 * 13 12 10 29 29 H 0.97000 * 120.00182 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99931 * 0.02562 * 9 7 2 31 31 H 1.09004 * 113.61202 * 254.53139 * 12 10 9 32 32 H 1.08994 * 113.61447 * 25.43570 * 12 10 9 33 33 H 0.97009 * 119.99534 * 24.99936 * 15 13 12 34 34 H 1.09003 * 109.43835 * 309.93788 * 20 18 16 35 35 H 1.09000 * 109.43375 * 69.79352 * 20 18 16 36 36 H 1.08997 * 109.59840 * 68.99832 * 21 20 18 37 37 H 1.09007 * 109.60069 * 189.47210 * 21 20 18 38 38 H 1.08001 * 125.72169 * 359.83757 * 23 22 21 39 39 H 1.08002 * 126.10179 * 179.97438 * 25 24 23 40 40 H 1.09005 * 109.71709 * 76.17409 * 27 26 25 41 41 H 1.08993 * 109.77809 * 315.44829 * 27 26 25 42 42 H 1.09006 * 113.61307 * 270.88660 * 28 13 12 43 43 H 1.08999 * 113.69146 * 139.99146 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5280 -3.2972 -0.4030 12 6 5.5263 -2.3662 -0.5928 13 6 5.9843 -3.3090 0.5325 14 1 5.9126 -4.3653 0.2734 15 7 7.2833 -2.9497 1.1068 16 6 8.0406 -3.8920 1.7025 17 8 7.6469 -5.0376 1.7627 18 6 9.3771 -3.5225 2.2928 19 1 9.2366 -2.7692 3.0680 20 6 10.0281 -4.7669 2.9026 21 6 11.2622 -4.3591 3.7150 22 7 12.1097 -3.5018 2.8831 23 6 13.4033 -3.1819 3.0591 24 7 13.7731 -2.3930 2.0838 25 6 12.7314 -2.1853 1.2602 26 6 11.6860 -2.8683 1.7424 27 6 10.2866 -2.9621 1.1904 28 6 4.7866 -2.7917 1.3464 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0014 31 1 5.6141 -2.8001 -1.5889 32 1 5.9550 -1.3663 -0.5263 33 1 7.5983 -2.0335 1.0583 34 1 9.3130 -5.2672 3.5558 35 1 10.3274 -5.4473 2.1053 36 1 10.9500 -3.8120 4.6045 37 1 11.8183 -5.2499 4.0073 38 1 14.0316 -3.5195 3.8700 39 1 12.7368 -1.5761 0.3684 40 1 10.2753 -3.6288 0.3281 41 1 9.9393 -1.9719 0.8956 42 1 5.0132 -1.9080 1.9431 43 1 4.2764 -3.5680 1.9166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022302492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:07 Heat of formation + Delta-G solvation = 31.912169 kcal Electronic energy + Delta-G solvation = -24221.746465 eV Core-core repulsion = 20688.615020 eV Total energy + Delta-G solvation = -3533.131445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.27302 -41.22960 -39.59460 -37.19077 -35.86971 -34.55610 -33.76336 -32.36731 -31.46006 -29.03331 -26.56917 -26.48379 -25.63464 -24.33529 -22.94046 -22.39745 -21.45616 -20.96080 -20.04852 -19.43676 -18.15841 -18.05218 -17.55496 -16.74132 -16.42977 -16.25738 -15.92958 -15.53973 -15.08199 -14.92942 -14.82238 -14.70188 -14.63887 -14.48206 -14.04105 -13.70806 -13.60677 -13.31254 -12.99890 -12.89117 -12.85546 -12.33083 -12.21358 -12.06983 -12.05455 -11.90927 -11.71901 -11.64625 -11.02883 -10.91623 -10.70150 -10.44086 -9.99660 -9.29170 -9.27580 -8.02020 -5.35908 1.12872 1.38347 1.43539 1.50535 1.57158 1.89645 2.15574 2.21566 2.49468 3.27831 3.34348 3.54437 3.58044 3.62864 3.75277 3.78737 3.83778 3.94502 4.05445 4.14936 4.19428 4.26723 4.29524 4.45271 4.52042 4.68213 4.74047 4.76203 4.84660 4.86233 4.90717 4.93839 5.08664 5.13156 5.15820 5.34211 5.42588 5.64567 5.77925 5.80207 6.22629 6.33286 6.57265 7.08268 7.13852 7.24027 7.84176 8.04084 9.19560 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.002623 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.629650 B =10672.243439 C =11340.960761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.246 1.246 7 C -0.236 4.236 8 H 0.054 0.946 9 N -0.738 5.738 10 C 0.150 3.850 11 H 0.074 0.926 12 C -0.139 4.139 13 C 0.136 3.864 14 H 0.104 0.896 15 N -0.702 5.702 16 C 0.520 3.480 17 O -0.580 6.580 18 C -0.102 4.102 19 H 0.119 0.881 20 C -0.113 4.113 21 C 0.105 3.895 22 N -0.457 5.457 23 C 0.183 3.817 24 N -0.541 5.541 25 C -0.046 4.046 26 C -0.025 4.025 27 C -0.029 4.029 28 C -0.171 4.171 29 H 0.257 0.743 30 H 0.369 0.631 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.415 0.585 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.235 0.765 39 H 0.176 0.824 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.742 -7.107 6.977 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.170 1.170 7 C -0.367 4.367 8 H 0.072 0.928 9 N -0.379 5.379 10 C 0.040 3.960 11 H 0.092 0.908 12 C -0.179 4.179 13 C 0.030 3.970 14 H 0.122 0.878 15 N -0.352 5.352 16 C 0.308 3.692 17 O -0.460 6.460 18 C -0.124 4.124 19 H 0.137 0.863 20 C -0.151 4.151 21 C -0.016 4.016 22 N -0.140 5.140 23 C -0.099 4.099 24 N -0.260 5.260 25 C -0.193 4.193 26 C -0.140 4.140 27 C -0.068 4.068 28 C -0.213 4.213 29 H 0.066 0.934 30 H 0.203 0.797 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.252 0.748 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.251 0.749 39 H 0.193 0.807 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 28.945 -7.765 7.014 30.778 hybrid contribution -0.997 0.995 0.095 1.412 sum 27.948 -6.770 7.109 29.622 Atomic orbital electron populations 1.69901 1.07351 1.26733 1.59655 1.25597 0.96172 1.01590 1.02609 0.85344 0.78714 0.79125 0.78156 1.20291 1.22679 1.17027 1.19098 0.82916 0.93391 1.41279 0.92784 1.42638 1.02287 1.03757 1.89209 1.21651 0.91030 0.88258 0.95030 0.90804 1.23700 0.95253 1.00346 0.98552 1.22090 0.81225 0.99491 0.94176 0.87774 1.45905 1.18967 1.12730 1.57639 1.20864 0.86354 0.84808 0.77217 1.90705 1.74296 1.21543 1.59420 1.21417 0.91043 1.00365 0.99573 0.86348 1.21651 0.96269 0.96503 1.00669 1.22246 0.90770 0.95237 0.93305 1.45670 1.10940 1.36780 1.20632 1.25423 0.83763 0.99351 1.01374 1.70466 1.31094 1.18591 1.05803 1.22123 0.89225 1.05501 1.02444 1.21173 0.98135 1.02650 0.92057 1.20191 0.86516 1.03704 0.96354 1.24167 0.97260 1.00677 0.99209 0.93388 0.79722 0.89627 0.88309 0.74798 0.88540 0.91424 0.87569 0.86355 0.74862 0.80659 0.89706 0.86921 0.90172 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.80 13.97 21.65 0.30 -62.50 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 43.86 27.74 68.60 1.90 45.76 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -9.80 6.52 99.48 0.65 -9.16 16 7 C -0.24 -13.13 10.45 84.03 0.88 -12.25 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 9 N -0.74 -32.30 5.20 -320.44 -1.67 -33.96 16 10 C 0.15 5.18 4.48 45.52 0.20 5.39 16 11 H 0.07 2.74 8.10 -2.39 -0.02 2.72 16 12 C -0.14 -3.35 7.58 31.12 0.24 -3.12 16 13 C 0.14 3.22 4.24 45.52 0.19 3.41 16 14 H 0.10 2.73 7.47 -2.39 -0.02 2.71 16 15 N -0.70 -12.41 5.26 -440.04 -2.31 -14.73 16 16 C 0.52 10.02 7.13 87.66 0.63 10.65 16 17 O -0.58 -16.21 15.42 -3.04 -0.05 -16.26 16 18 C -0.10 -1.24 2.55 -11.33 -0.03 -1.27 16 19 H 0.12 1.11 8.12 -2.39 -0.02 1.09 16 20 C -0.11 -1.28 4.66 30.73 0.14 -1.13 16 21 C 0.11 0.73 7.00 86.48 0.61 1.33 16 22 N -0.46 -5.77 3.13 -514.84 -1.61 -7.38 16 23 C 0.18 2.63 12.66 180.38 2.28 4.91 16 24 N -0.54 -11.41 11.27 -200.97 -2.26 -13.68 16 25 C -0.05 -0.86 11.84 83.30 0.99 0.13 16 26 C -0.03 -0.38 6.57 40.73 0.27 -0.11 16 27 C -0.03 -0.32 5.45 30.03 0.16 -0.16 16 28 C -0.17 -5.15 7.68 31.12 0.24 -4.91 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.37 15.07 5.78 -92.70 -0.54 14.53 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 33 H 0.41 4.98 8.45 -92.70 -0.78 4.20 16 34 H 0.10 1.20 7.77 -2.39 -0.02 1.18 16 35 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 36 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.12 0.34 8.14 -2.38 -0.02 0.33 16 38 H 0.24 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.08 1.04 8.11 -2.38 -0.02 1.02 16 41 H 0.11 0.82 7.95 -2.39 -0.02 0.80 16 42 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.63 351.66 1.21 -77.42 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.35 Total: 25.96 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 7.26 Total: -0.64 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -7.56 Total: -132.24 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.05 Total: -16.26 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.90 Total: 45.76 kcal Total: -78.63 1.21 -77.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022302492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.330 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds