Wall clock time and date at job start Fri Apr 10 2020 17:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00314 * 2 1 4 4 H 1.48493 * 109.47078 * 239.99517 * 3 2 1 5 5 H 1.48493 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 119.99481 * 3 2 1 7 7 C 1.38816 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99855 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99697 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85213 * 336.19939 * 10 9 7 12 12 C 1.53780 * 113.61499 * 107.50330 * 10 9 7 13 13 C 1.53781 * 87.08216 * 139.97810 * 12 10 9 14 14 H 1.09008 * 113.68864 * 89.12831 * 13 12 10 15 15 N 1.46497 * 113.61588 * 220.01952 * 13 12 10 16 16 C 1.34775 * 120.00109 * 252.49575 * 15 13 12 17 17 O 1.21282 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00180 * 180.02562 * 16 15 13 19 19 H 1.09002 * 109.42883 * 60.00427 * 18 16 15 20 20 C 1.53024 * 109.43056 * 179.90034 * 18 16 15 21 21 C 1.53375 * 109.74986 * 191.75125 * 20 18 16 22 22 C 1.50947 * 108.20469 * 309.35635 * 21 20 18 23 23 N 1.30132 * 128.28627 * 196.64531 * 22 21 20 24 24 N 1.40313 * 108.12551 * 179.85978 * 23 22 21 25 25 H 0.96992 * 126.00640 * 180.02562 * 24 23 22 26 26 C 1.35200 * 107.99278 * 0.04471 * 24 23 22 27 27 C 1.34580 * 107.61570 * 0.03527 * 26 24 23 28 28 C 1.50879 * 128.32149 * 179.71754 * 27 26 24 29 29 C 1.53778 * 113.61407 * 205.00252 * 10 9 7 30 30 H 0.97003 * 119.99366 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00090 * 0.02562 * 9 7 2 32 32 H 1.09004 * 113.61098 * 25.43404 * 12 10 9 33 33 H 1.08996 * 113.62002 * 254.53132 * 12 10 9 34 34 H 0.97004 * 120.00105 * 72.50359 * 15 13 12 35 35 H 1.08992 * 109.42728 * 311.84053 * 20 18 16 36 36 H 1.09003 * 109.42418 * 71.73073 * 20 18 16 37 37 H 1.09000 * 109.70994 * 69.03182 * 21 20 18 38 38 H 1.08997 * 109.72024 * 189.67222 * 21 20 18 39 39 H 1.08001 * 126.19278 * 180.02562 * 26 24 23 40 40 H 1.09000 * 109.72116 * 77.07322 * 28 27 26 41 41 H 1.08998 * 109.71846 * 316.41224 * 28 27 26 42 42 H 1.08998 * 113.62178 * 105.47291 * 29 10 9 43 43 H 1.08998 * 113.69275 * 334.57800 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 3.0655 -3.5639 -0.4048 12 6 1.9989 -4.4022 1.3443 13 6 1.8477 -5.6976 0.5295 14 1 2.7976 -6.1647 0.2693 15 7 0.8871 -6.6432 1.1035 16 6 1.3247 -7.7707 1.6983 17 8 2.5137 -8.0023 1.7587 18 6 0.3366 -8.7437 2.2882 19 1 -0.3321 -9.1010 1.5051 20 6 1.0900 -9.9296 2.8945 21 6 0.1023 -11.0536 3.2315 22 6 -1.0288 -10.4617 4.0370 23 7 -1.9082 -11.0818 4.7688 24 7 -2.7628 -10.1217 5.3315 25 1 -3.5114 -10.3007 5.9217 26 6 -2.3598 -8.9033 4.9062 27 6 -1.2932 -9.0836 4.1055 28 6 -0.4830 -8.0398 3.3772 29 6 1.2600 -4.8288 -0.5950 30 1 -0.4849 0.8401 -0.0004 31 1 0.3554 -2.3880 -0.0002 32 1 1.1205 -4.1570 1.9414 33 1 2.9269 -4.3503 1.9137 34 1 -0.0638 -6.4579 1.0554 35 1 1.8256 -10.2961 2.1786 36 1 1.5978 -9.6096 3.8044 37 1 -0.2892 -11.4871 2.3112 38 1 0.6064 -11.8233 3.8158 39 1 -2.8120 -7.9566 5.1625 40 1 0.1872 -7.5403 4.0767 41 1 -1.1503 -7.3090 2.9204 42 1 1.5915 -5.1213 -1.5913 43 1 0.1795 -4.7014 -0.5289 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022971096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:11 Heat of formation + Delta-G solvation = 55.542047 kcal Electronic energy + Delta-G solvation = -24125.934263 eV Core-core repulsion = 20593.827486 eV Total energy + Delta-G solvation = -3532.106777 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.75803 -39.99531 -38.17189 -36.19476 -34.09823 -32.92827 -32.22790 -30.74158 -29.94456 -28.90624 -25.13709 -25.06600 -24.49706 -23.16459 -21.64163 -21.26047 -20.25085 -19.30563 -18.95859 -17.91615 -17.22207 -16.88668 -16.16538 -15.66529 -15.07434 -14.76260 -14.60400 -14.38824 -14.07232 -13.85461 -13.59001 -13.10231 -13.02749 -12.94679 -12.88389 -12.28646 -11.99332 -11.94717 -11.89878 -11.28365 -11.24429 -11.08371 -10.91394 -10.61418 -10.59037 -10.49781 -10.30955 -10.07122 -9.70056 -9.65959 -9.49123 -8.90801 -8.72408 -8.69771 -6.99262 -5.81156 -3.09784 1.62122 2.45141 2.56712 2.72149 3.31405 3.42604 3.47159 3.48074 4.14265 4.47333 4.57122 4.61193 4.62585 4.84523 4.96604 5.08054 5.16075 5.19917 5.25698 5.28405 5.38236 5.43353 5.47275 5.48643 5.68295 5.72992 5.86062 5.87097 5.95296 5.98057 6.10224 6.14323 6.26097 6.31796 6.38076 6.53840 6.62235 6.77501 6.99593 7.07432 7.39638 7.67651 7.67745 8.34824 8.37663 9.48875 10.05716 10.40269 11.41242 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.002557 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.880126 B =10948.396298 C =11801.569635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.168 3.832 11 H 0.079 0.921 12 C -0.175 4.175 13 C 0.117 3.883 14 H 0.109 0.891 15 N -0.713 5.713 16 C 0.516 3.484 17 O -0.544 6.544 18 C -0.105 4.105 19 H 0.098 0.902 20 C -0.096 4.096 21 C -0.039 4.039 22 C 0.084 3.916 23 N -0.292 5.292 24 N -0.486 5.486 25 H 0.439 0.561 26 C 0.064 3.936 27 C -0.234 4.234 28 C -0.031 4.031 29 C -0.159 4.159 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.399 0.601 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.178 0.822 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 -21.520 7.467 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.055 3.945 11 H 0.097 0.903 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.363 5.363 16 C 0.302 3.698 17 O -0.422 6.422 18 C -0.126 4.126 19 H 0.116 0.884 20 C -0.135 4.135 21 C -0.079 4.079 22 C -0.085 4.085 23 N -0.114 5.114 24 N -0.194 5.194 25 H 0.283 0.717 26 C -0.081 4.081 27 C -0.245 4.245 28 C -0.070 4.070 29 C -0.199 4.199 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.233 0.767 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.195 0.805 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.873 -22.599 7.906 24.433 hybrid contribution -0.725 1.838 0.185 1.985 sum -5.599 -20.762 8.091 22.975 Atomic orbital electron populations 1.69647 1.05147 1.25873 1.57516 1.24760 0.95536 0.97795 1.02784 0.86255 0.78542 0.83403 0.77923 1.21188 1.21701 1.21207 1.19276 0.91122 0.84174 1.42944 0.91048 1.42348 1.05665 0.99769 1.87037 1.21357 0.95464 0.84923 0.92707 0.90278 1.24315 1.01785 0.95210 1.00443 1.22484 0.93322 0.87523 0.95458 0.87358 1.46082 1.10439 1.21468 1.58289 1.20561 0.89538 0.81898 0.77765 1.90683 1.17235 1.75980 1.58272 1.21367 0.96942 0.95570 0.98738 0.88375 1.21381 0.96885 0.93113 1.02079 1.20185 0.91605 0.97809 0.98252 1.22423 0.96378 0.92585 0.97067 1.77005 1.05148 1.14214 1.15054 1.46326 1.27828 1.03874 1.41414 0.71750 1.22106 0.97234 0.90773 0.98031 1.20005 1.01715 0.94790 1.08032 1.19935 0.96585 0.94825 0.95635 1.23859 1.01155 0.97383 0.97485 0.93417 0.78108 0.90233 0.92316 0.76670 0.89736 0.90861 0.89652 0.89602 0.80501 0.90471 0.90432 0.91579 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -17.24 5.40 -52.63 -0.28 -17.53 16 10 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 11 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 12 C -0.18 -2.99 7.68 -25.92 -0.20 -3.18 16 13 C 0.12 1.69 4.24 -67.12 -0.28 1.41 16 14 H 0.11 1.66 7.47 -51.92 -0.39 1.27 16 15 N -0.71 -8.58 5.26 -53.02 -0.28 -8.86 16 16 C 0.52 6.50 7.13 -10.99 -0.08 6.42 16 17 O -0.54 -8.92 15.37 5.56 0.09 -8.84 16 18 C -0.10 -0.98 2.47 -91.55 -0.23 -1.21 16 19 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 20 C -0.10 -0.89 4.64 -26.52 -0.12 -1.02 16 21 C -0.04 -0.33 6.31 -27.57 -0.17 -0.50 16 22 C 0.08 0.86 7.10 -82.35 -0.58 0.27 16 23 N -0.29 -3.17 12.68 33.75 0.43 -2.74 16 24 N -0.49 -3.85 7.37 30.35 0.22 -3.63 16 25 H 0.44 2.04 8.96 -182.44 -1.64 0.41 16 26 C 0.06 0.49 11.95 -17.36 -0.21 0.28 16 27 C -0.23 -2.17 5.89 -104.98 -0.62 -2.78 16 28 C -0.03 -0.27 5.40 -27.59 -0.15 -0.42 16 29 C -0.16 -2.43 7.58 -25.92 -0.20 -2.62 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.38 9.82 7.92 -40.82 -0.32 9.50 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 3.92 8.36 -40.82 -0.34 3.57 16 35 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 36 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.08 0.75 8.12 -51.93 -0.42 0.32 16 41 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -33.90 354.04 -9.86 -43.76 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.68 Total: 10.04 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.39 Total: -7.70 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.81 Total: -59.66 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.90 -9.86 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022971096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.301 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds