Wall clock time and date at job start Fri Apr 10 2020 17:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32164 * 120.53888 * 2 1 4 4 C 1.31855 * 120.96810 * 180.31386 * 3 2 1 5 5 N 1.31890 * 122.09662 * 359.65813 * 4 3 2 6 6 C 1.32137 * 120.96165 * 0.02562 * 5 4 3 7 7 C 1.39931 * 120.53890 * 179.69498 * 2 1 3 8 8 C 1.47839 * 120.93725 * 359.97438 * 7 2 1 9 9 O 1.21546 * 119.99552 * 354.44750 * 8 7 2 10 10 N 1.34770 * 119.99805 * 174.44561 * 8 7 2 11 11 C 1.46501 * 119.99925 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47220 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.70253 * 60.33216 * 12 11 10 14 14 C 1.53622 * 109.66353 * 180.92318 * 12 11 10 15 15 C 1.53041 * 109.24361 * 174.54482 * 14 12 11 16 16 C 1.53041 * 109.53930 * 298.51272 * 15 14 12 17 17 C 1.53194 * 109.31198 * 61.36143 * 16 15 14 18 18 N 1.46927 * 108.77635 * 305.36467 * 17 16 15 19 19 C 1.36936 * 120.63372 * 233.58530 * 18 17 16 20 20 H 1.07998 * 120.00339 * 148.15142 * 19 18 17 21 21 C 1.38808 * 119.99725 * 328.42702 * 19 18 17 22 22 N 1.31622 * 120.00416 * 166.00479 * 21 19 18 23 23 Si 1.86806 * 120.00150 * 346.00577 * 21 19 18 24 24 H 1.48491 * 109.47293 * 88.61266 * 23 21 19 25 25 H 1.48503 * 109.47140 * 208.61507 * 23 21 19 26 26 H 1.48498 * 109.46861 * 328.60960 * 23 21 19 27 27 H 1.08993 * 109.47159 * 263.67966 * 1 2 3 28 28 H 1.09001 * 109.47010 * 23.68105 * 1 2 3 29 29 H 1.08995 * 109.47091 * 143.67528 * 1 2 3 30 30 H 1.07996 * 118.95531 * 179.68347 * 4 3 2 31 31 H 1.08001 * 120.53465 * 180.02562 * 6 5 4 32 32 H 0.97000 * 120.00619 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.46823 * 60.00090 * 11 10 8 34 34 H 1.09001 * 109.47086 * 300.00585 * 11 10 8 35 35 H 1.09001 * 109.63324 * 54.55522 * 14 12 11 36 36 H 1.08999 * 109.46010 * 294.43482 * 14 12 11 37 37 H 1.08997 * 109.46014 * 178.48687 * 15 14 12 38 38 H 1.08999 * 109.44630 * 58.52293 * 15 14 12 39 39 H 1.09000 * 109.49505 * 301.41371 * 16 15 14 40 40 H 1.08993 * 109.52421 * 181.32672 * 16 15 14 41 41 H 1.09001 * 109.58719 * 185.57670 * 17 16 15 42 42 H 1.09001 * 109.70270 * 65.22461 * 17 16 15 43 43 H 0.96994 * 120.00543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 -0.0062 5 7 4.2062 0.0362 -0.0060 6 6 3.6164 -1.1462 0.0000 7 6 2.2180 -1.2052 0.0064 8 6 1.5120 -2.5041 0.0139 9 8 0.3014 -2.5371 0.1164 10 7 2.2109 -3.6515 -0.0930 11 6 1.5114 -4.9387 -0.0850 12 6 2.5293 -6.0732 -0.2182 13 1 3.2267 -6.0413 0.6189 14 6 1.7985 -7.4243 -0.2335 15 6 2.8091 -8.5414 -0.5032 16 6 3.4545 -8.3277 -1.8743 17 6 4.2000 -6.9894 -1.8804 18 7 3.2675 -5.9269 -1.4802 19 6 3.0939 -4.8186 -2.2655 20 1 2.1347 -4.3231 -2.2960 21 6 4.1491 -4.3354 -3.0269 22 7 3.9245 -3.4558 -3.9800 23 14 5.8882 -4.9333 -2.6989 24 1 6.1526 -6.1526 -3.5041 25 1 6.8560 -3.8717 -3.0757 26 1 6.0387 -5.2506 -1.2561 27 1 -0.3633 -0.1131 1.0213 28 1 -0.3633 0.9411 -0.4128 29 1 -0.3633 -0.8279 -0.6087 30 1 4.0128 2.0970 -0.0112 31 1 4.2039 -2.0525 0.0006 32 1 3.1771 -3.6251 -0.1744 33 1 0.8123 -4.9774 -0.9203 34 1 0.9649 -5.0494 0.8516 35 1 1.0409 -7.4220 -1.0173 36 1 1.3218 -7.5903 0.7326 37 1 2.2986 -9.5043 -0.4882 38 1 3.5801 -8.5271 0.2672 39 1 2.6814 -8.3170 -2.6426 40 1 4.1570 -9.1363 -2.0763 41 1 4.5775 -6.7859 -2.8824 42 1 5.0322 -7.0291 -1.1775 43 1 4.6619 -3.1179 -4.5118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024339365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:38 Heat of formation + Delta-G solvation = 37.628920 kcal Electronic energy + Delta-G solvation = -25979.647930 eV Core-core repulsion = 22446.764381 eV Total energy + Delta-G solvation = -3532.883549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04289 -39.13851 -37.96789 -34.77678 -33.91328 -33.11899 -32.53760 -30.96594 -30.75412 -28.46166 -26.32487 -25.20704 -24.23177 -22.78444 -22.67562 -20.97162 -20.33343 -19.48014 -17.61552 -17.47433 -16.68780 -16.34961 -15.75966 -15.26604 -15.15917 -14.87398 -13.94720 -13.85579 -13.80222 -13.76357 -13.44472 -13.29518 -12.93499 -12.74543 -12.58637 -12.25625 -12.11272 -11.95405 -11.71105 -11.41606 -11.35962 -10.92731 -10.71422 -10.50994 -10.39362 -10.25842 -9.98614 -9.64962 -9.55273 -9.41459 -9.27021 -9.14286 -8.79528 -8.35277 -7.01789 -6.05032 -3.49711 0.67803 1.19439 3.19617 3.22796 3.35092 3.40390 3.60608 4.02745 4.15496 4.25197 4.39075 4.57358 4.72741 4.99752 5.14740 5.17621 5.26009 5.35535 5.43125 5.44402 5.68501 5.70219 5.79422 5.83845 5.88199 5.96173 6.03646 6.11783 6.14863 6.26938 6.32065 6.34948 6.41413 6.50244 6.54857 6.62058 6.68028 6.90565 7.00831 7.06204 7.85884 8.03327 8.16206 8.25214 8.65709 8.80766 9.58180 9.97322 11.08904 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.005598 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.280630 B = 5000.817982 C = 6167.385641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.229 3.771 3 N -0.531 5.531 4 C 0.309 3.691 5 N -0.528 5.528 6 C 0.195 3.805 7 C -0.230 4.230 8 C 0.565 3.435 9 O -0.548 6.548 10 N -0.684 5.684 11 C 0.136 3.864 12 C 0.163 3.837 13 H 0.038 0.962 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.136 4.136 17 C 0.122 3.878 18 N -0.605 5.605 19 C -0.267 4.267 20 H 0.093 0.907 21 C 0.028 3.972 22 N -0.903 5.903 23 Si 0.883 3.117 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.270 1.270 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.197 0.803 31 H 0.171 0.829 32 H 0.409 0.591 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 -0.609 9.528 9.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 N -0.246 5.246 4 C 0.022 3.978 5 N -0.243 5.243 6 C 0.028 3.972 7 C -0.237 4.237 8 C 0.350 3.650 9 O -0.429 6.429 10 N -0.334 5.334 11 C 0.013 3.987 12 C 0.056 3.944 13 H 0.056 0.944 14 C -0.168 4.168 15 C -0.146 4.146 16 C -0.175 4.175 17 C -0.003 4.003 18 N -0.331 5.331 19 C -0.395 4.395 20 H 0.110 0.890 21 C -0.172 4.172 22 N -0.545 5.545 23 Si 0.714 3.286 24 H -0.215 1.215 25 H -0.233 1.233 26 H -0.195 1.195 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.214 0.786 31 H 0.188 0.812 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.139 0.344 9.461 9.706 hybrid contribution 1.408 -1.148 -0.281 1.838 sum -0.731 -0.804 9.180 9.244 Atomic orbital electron populations 1.21044 0.86794 1.04302 1.04348 1.21930 0.98035 0.86588 0.85222 1.68356 1.10265 1.29864 1.16102 1.25098 0.86864 0.97195 0.88690 1.68424 1.41569 0.98981 1.15280 1.23491 0.91145 0.96525 0.86003 1.21654 0.96165 0.96527 1.09402 1.17615 0.86748 0.83262 0.77331 1.90669 1.13312 1.87170 1.51770 1.45841 1.11643 1.04956 1.70940 1.21306 0.94869 0.81562 1.01013 1.20853 0.92281 0.92117 0.89157 0.94437 1.22004 0.98304 0.95573 1.00879 1.21365 0.98219 0.97476 0.97533 1.21998 1.00061 0.98251 0.97163 1.21430 0.92024 0.87706 0.99133 1.44405 1.49187 1.19439 1.20035 1.18988 0.97155 1.03308 1.20082 0.88966 1.25369 0.97535 0.96566 0.97699 1.69771 1.31708 1.32473 1.20546 0.87019 0.86108 0.76710 0.78794 1.21528 1.23263 1.19477 0.89558 0.91021 0.87343 0.78650 0.81231 0.75280 0.90892 0.92042 0.91555 0.92523 0.93031 0.92743 0.91808 0.93067 0.91005 0.95648 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 8.98 36.01 0.32 -1.25 16 2 C 0.23 3.78 6.87 -81.82 -0.56 3.22 16 3 N -0.53 -8.37 10.36 -10.48 -0.11 -8.48 16 4 C 0.31 4.51 12.27 -92.02 -1.13 3.38 16 5 N -0.53 -8.67 10.42 -14.24 -0.15 -8.81 16 6 C 0.19 3.29 10.80 -16.77 -0.18 3.11 16 7 C -0.23 -4.01 5.91 -104.69 -0.62 -4.63 16 8 C 0.57 10.41 7.73 -12.33 -0.10 10.32 16 9 O -0.55 -10.76 13.53 5.33 0.07 -10.69 16 10 N -0.68 -12.27 3.81 -61.25 -0.23 -12.50 16 11 C 0.14 2.33 4.44 -4.04 -0.02 2.31 16 12 C 0.16 2.76 3.03 -67.37 -0.20 2.55 16 13 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 14 C -0.13 -1.87 5.40 -26.39 -0.14 -2.01 16 15 C -0.11 -1.52 5.88 -26.69 -0.16 -1.68 16 16 C -0.14 -2.21 6.08 -26.61 -0.16 -2.37 16 17 C 0.12 2.41 4.16 -3.71 -0.02 2.40 16 18 N -0.61 -12.48 2.72 -164.52 -0.45 -12.93 16 19 C -0.27 -6.49 7.40 -15.06 -0.11 -6.60 16 20 H 0.09 2.48 6.10 -52.49 -0.32 2.16 16 21 C 0.03 0.74 5.32 -17.43 -0.09 0.65 16 22 N -0.90 -25.85 13.97 55.49 0.78 -25.07 16 23 Si 0.88 20.67 24.26 -169.99 -4.12 16.54 16 24 H -0.29 -6.68 6.52 56.52 0.37 -6.32 16 25 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.27 -6.02 6.51 56.52 0.37 -5.65 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.77 5.97 -51.93 -0.31 1.46 16 30 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.17 2.69 6.57 -52.49 -0.34 2.34 16 32 H 0.41 7.46 5.54 -40.82 -0.23 7.23 16 33 H 0.07 1.41 7.43 -51.93 -0.39 1.03 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.59 4.50 -51.93 -0.23 1.36 16 42 H 0.03 0.50 6.89 -51.93 -0.36 0.14 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -29.48 334.28 -8.37 -37.85 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.03 Total: 9.65 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -3.17 Total: 9.41 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -0.16 Total: -67.80 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.12 Total: 16.54 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.48 -8.37 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024339365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.481 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds