Wall clock time and date at job start Fri Apr 10 2020 17:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32164 * 120.53888 * 2 1 4 4 C 1.31855 * 120.96810 * 180.31386 * 3 2 1 5 5 N 1.31890 * 122.09662 * 359.65813 * 4 3 2 6 6 C 1.32137 * 120.96165 * 0.02562 * 5 4 3 7 7 C 1.39931 * 120.53890 * 179.69498 * 2 1 3 8 8 C 1.47839 * 120.93725 * 359.97438 * 7 2 1 9 9 O 1.21546 * 119.99552 * 354.44750 * 8 7 2 10 10 N 1.34770 * 119.99805 * 174.44561 * 8 7 2 11 11 C 1.46501 * 119.99925 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47220 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.70253 * 60.33216 * 12 11 10 14 14 C 1.53622 * 109.66353 * 180.92318 * 12 11 10 15 15 C 1.53041 * 109.24361 * 174.54482 * 14 12 11 16 16 C 1.53041 * 109.53930 * 298.51272 * 15 14 12 17 17 C 1.53194 * 109.31198 * 61.36143 * 16 15 14 18 18 N 1.46927 * 108.77635 * 305.36467 * 17 16 15 19 19 C 1.36936 * 120.63372 * 233.58530 * 18 17 16 20 20 H 1.07998 * 120.00339 * 148.15142 * 19 18 17 21 21 C 1.38808 * 119.99725 * 328.42702 * 19 18 17 22 22 N 1.31622 * 120.00416 * 166.00479 * 21 19 18 23 23 Si 1.86806 * 120.00150 * 346.00577 * 21 19 18 24 24 H 1.48491 * 109.47293 * 88.61266 * 23 21 19 25 25 H 1.48503 * 109.47140 * 208.61507 * 23 21 19 26 26 H 1.48498 * 109.46861 * 328.60960 * 23 21 19 27 27 H 1.08993 * 109.47159 * 263.67966 * 1 2 3 28 28 H 1.09001 * 109.47010 * 23.68105 * 1 2 3 29 29 H 1.08995 * 109.47091 * 143.67528 * 1 2 3 30 30 H 1.07996 * 118.95531 * 179.68347 * 4 3 2 31 31 H 1.08001 * 120.53465 * 180.02562 * 6 5 4 32 32 H 0.97000 * 120.00619 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.46823 * 60.00090 * 11 10 8 34 34 H 1.09001 * 109.47086 * 300.00585 * 11 10 8 35 35 H 1.09001 * 109.63324 * 54.55522 * 14 12 11 36 36 H 1.08999 * 109.46010 * 294.43482 * 14 12 11 37 37 H 1.08997 * 109.46014 * 178.48687 * 15 14 12 38 38 H 1.08999 * 109.44630 * 58.52293 * 15 14 12 39 39 H 1.09000 * 109.49505 * 301.41371 * 16 15 14 40 40 H 1.08993 * 109.52421 * 181.32672 * 16 15 14 41 41 H 1.09001 * 109.58719 * 185.57670 * 17 16 15 42 42 H 1.09001 * 109.70270 * 65.22461 * 17 16 15 43 43 H 0.96994 * 120.00543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 -0.0062 5 7 4.2062 0.0362 -0.0060 6 6 3.6164 -1.1462 0.0000 7 6 2.2180 -1.2052 0.0064 8 6 1.5120 -2.5041 0.0139 9 8 0.3014 -2.5371 0.1164 10 7 2.2109 -3.6515 -0.0930 11 6 1.5114 -4.9387 -0.0850 12 6 2.5293 -6.0732 -0.2182 13 1 3.2267 -6.0413 0.6189 14 6 1.7985 -7.4243 -0.2335 15 6 2.8091 -8.5414 -0.5032 16 6 3.4545 -8.3277 -1.8743 17 6 4.2000 -6.9894 -1.8804 18 7 3.2675 -5.9269 -1.4802 19 6 3.0939 -4.8186 -2.2655 20 1 2.1347 -4.3231 -2.2960 21 6 4.1491 -4.3354 -3.0269 22 7 3.9245 -3.4558 -3.9800 23 14 5.8882 -4.9333 -2.6989 24 1 6.1526 -6.1526 -3.5041 25 1 6.8560 -3.8717 -3.0757 26 1 6.0387 -5.2506 -1.2561 27 1 -0.3633 -0.1131 1.0213 28 1 -0.3633 0.9411 -0.4128 29 1 -0.3633 -0.8279 -0.6087 30 1 4.0128 2.0970 -0.0112 31 1 4.2039 -2.0525 0.0006 32 1 3.1771 -3.6251 -0.1744 33 1 0.8123 -4.9774 -0.9203 34 1 0.9649 -5.0494 0.8516 35 1 1.0409 -7.4220 -1.0173 36 1 1.3218 -7.5903 0.7326 37 1 2.2986 -9.5043 -0.4882 38 1 3.5801 -8.5271 0.2672 39 1 2.6814 -8.3170 -2.6426 40 1 4.1570 -9.1363 -2.0763 41 1 4.5775 -6.7859 -2.8824 42 1 5.0322 -7.0291 -1.1775 43 1 4.6619 -3.1179 -4.5118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024339365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:37 Heat of formation + Delta-G solvation = 18.845618 kcal Electronic energy + Delta-G solvation = -25980.462435 eV Core-core repulsion = 22446.764381 eV Total energy + Delta-G solvation = -3533.698054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32571 -40.57018 -39.41613 -36.13791 -35.23441 -34.85295 -33.84043 -32.59550 -32.21919 -29.71122 -27.78523 -26.70384 -25.65464 -24.30857 -23.95428 -22.34888 -21.78553 -20.89537 -19.07205 -18.82181 -18.16944 -17.77227 -17.34065 -16.78938 -16.62379 -16.29699 -15.33567 -15.29675 -15.23103 -15.17475 -14.79281 -14.73762 -14.27767 -14.15807 -13.94739 -13.72307 -13.57346 -13.24920 -13.20605 -12.91890 -12.70204 -12.52472 -12.26112 -11.94252 -11.67435 -11.64312 -11.51427 -11.22790 -11.19306 -10.73852 -10.70100 -10.62004 -10.41706 -9.85159 -8.77001 -8.07532 -5.46591 -0.59918 -0.10035 1.33255 1.42924 1.51945 1.81132 2.23139 2.45448 2.72669 2.96865 3.05618 3.11947 3.30722 3.31543 3.67445 3.84514 3.93862 4.09171 4.19653 4.27310 4.34701 4.43762 4.46200 4.54202 4.65098 4.69670 4.75567 4.80011 4.88214 4.96257 5.05085 5.08784 5.18794 5.26914 5.31250 5.33030 5.35727 5.57141 5.65482 5.79097 5.95795 6.26403 6.57365 6.90931 6.96422 7.20191 7.67954 8.09561 9.10185 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.005598 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.280630 B = 5000.817982 C = 6167.385641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.222 3.778 3 N -0.535 5.535 4 C 0.312 3.688 5 N -0.542 5.542 6 C 0.191 3.809 7 C -0.250 4.250 8 C 0.563 3.437 9 O -0.565 6.565 10 N -0.686 5.686 11 C 0.139 3.861 12 C 0.160 3.840 13 H 0.057 0.943 14 C -0.123 4.123 15 C -0.103 4.103 16 C -0.131 4.131 17 C 0.115 3.885 18 N -0.617 5.617 19 C -0.227 4.227 20 H 0.060 0.940 21 C -0.026 4.026 22 N -0.957 5.957 23 Si 0.937 3.063 24 H -0.287 1.287 25 H -0.324 1.324 26 H -0.247 1.247 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.238 0.762 31 H 0.174 0.826 32 H 0.407 0.593 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.036 0.964 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -1.873 11.792 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.075 3.925 3 N -0.249 5.249 4 C 0.026 3.974 5 N -0.256 5.256 6 C 0.025 3.975 7 C -0.258 4.258 8 C 0.349 3.651 9 O -0.447 6.447 10 N -0.335 5.335 11 C 0.015 3.985 12 C 0.055 3.945 13 H 0.075 0.925 14 C -0.163 4.163 15 C -0.141 4.141 16 C -0.170 4.170 17 C -0.009 4.009 18 N -0.343 5.343 19 C -0.357 4.357 20 H 0.078 0.922 21 C -0.221 4.221 22 N -0.603 5.603 23 Si 0.768 3.232 24 H -0.214 1.214 25 H -0.254 1.254 26 H -0.171 1.171 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.254 0.746 31 H 0.191 0.809 32 H 0.245 0.755 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.739 -0.976 11.776 11.944 hybrid contribution 1.191 -0.748 -0.957 1.701 sum -0.548 -1.724 10.819 10.969 Atomic orbital electron populations 1.20999 0.85691 1.04317 1.04819 1.22267 0.98985 0.86625 0.84600 1.68462 1.10797 1.29224 1.16465 1.25963 0.86701 0.98181 0.86536 1.68496 1.41882 0.99226 1.15994 1.23598 0.91079 0.97150 0.85718 1.21643 0.96507 0.96404 1.11224 1.17806 0.86634 0.83759 0.76884 1.90653 1.13915 1.87491 1.52647 1.45859 1.11498 1.05297 1.70803 1.21346 0.94653 0.81475 1.01005 1.21102 0.92275 0.93423 0.87703 0.92525 1.21972 0.98006 0.94066 1.02215 1.21367 0.98355 0.98294 0.96080 1.21930 0.99866 0.96686 0.98517 1.21480 0.92547 0.89186 0.97717 1.44540 1.49742 1.18749 1.21254 1.18753 0.95269 1.03125 1.18550 0.92236 1.25854 1.00707 0.97416 0.98128 1.69922 1.32076 1.35521 1.22772 0.86126 0.81933 0.75445 0.79696 1.21416 1.25376 1.17120 0.88254 0.89299 0.89364 0.74568 0.80930 0.75541 0.93832 0.89584 0.93045 0.89281 0.90438 0.91375 0.93376 0.90819 0.93868 0.94576 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 8.98 71.24 0.64 -2.28 16 2 C 0.22 7.28 6.87 42.92 0.29 7.57 16 3 N -0.53 -16.22 10.36 -187.06 -1.94 -18.16 16 4 C 0.31 8.63 12.27 180.84 2.22 10.85 16 5 N -0.54 -17.36 10.42 -198.97 -2.07 -19.43 16 6 C 0.19 6.48 10.80 85.07 0.92 7.40 16 7 C -0.25 -8.81 5.91 -19.91 -0.12 -8.93 16 8 C 0.56 21.09 7.73 86.79 0.67 21.76 16 9 O -0.56 -22.53 13.53 -3.86 -0.05 -22.58 16 10 N -0.69 -24.71 3.81 -465.99 -1.77 -26.48 16 11 C 0.14 4.65 4.44 86.38 0.38 5.04 16 12 C 0.16 5.08 3.03 45.12 0.14 5.22 16 13 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 14 C -0.12 -3.18 5.40 30.82 0.17 -3.02 16 15 C -0.10 -2.46 5.88 30.62 0.18 -2.28 16 16 C -0.13 -3.89 6.08 30.67 0.19 -3.71 16 17 C 0.12 4.34 4.16 86.36 0.36 4.70 16 18 N -0.62 -24.82 2.72 -674.42 -1.84 -26.65 16 19 C -0.23 -11.25 7.40 84.03 0.62 -10.63 16 20 H 0.06 3.35 6.10 -2.91 -0.02 3.33 16 21 C -0.03 -1.40 5.32 84.86 0.45 -0.94 16 22 N -0.96 -57.14 13.97 21.65 0.30 -56.83 16 23 Si 0.94 43.27 24.26 68.60 1.66 44.93 16 24 H -0.29 -13.03 6.52 99.48 0.65 -12.38 16 25 H -0.32 -15.88 7.11 99.48 0.71 -15.17 16 26 H -0.25 -10.34 6.51 99.48 0.65 -9.69 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 2.94 5.97 -2.39 -0.01 2.92 16 30 H 0.24 4.26 8.06 -2.91 -0.02 4.23 16 31 H 0.17 5.55 6.57 -2.91 -0.02 5.53 16 32 H 0.41 14.88 5.54 -92.71 -0.51 14.37 16 33 H 0.04 1.72 7.43 -2.39 -0.02 1.70 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.88 4.50 -2.39 -0.01 1.87 16 42 H 0.04 1.30 6.89 -2.39 -0.02 1.28 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -65.70 334.28 1.81 -63.89 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.41 Total: 30.57 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 7.11 Total: 30.75 kcal Atomic # 7 Polarization: -140.24 SS G_CDS: -7.32 Total: -147.56 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.66 Total: 44.93 kcal Total: -65.70 1.81 -63.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024339365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.732 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds