Wall clock time and date at job start Fri Apr 10 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.47520 * 34.30157 * 10 9 7 12 12 C 1.56004 * 110.52874 * 271.65847 * 10 9 7 13 13 C 1.56335 * 105.76836 * 248.33401 * 12 10 9 14 14 C 1.51570 * 101.81545 * 25.43801 * 13 12 10 15 15 H 1.08999 * 111.12249 * 72.20551 * 14 13 12 16 16 C 1.51520 * 123.33632 * 207.98547 * 14 13 12 17 17 N 1.49622 * 102.49679 * 151.62927 * 16 14 13 18 18 C 1.34769 * 126.07544 * 154.35610 * 17 16 14 19 19 O 1.21283 * 120.00420 * 179.97438 * 18 17 16 20 20 C 1.50704 * 119.99631 * 359.97296 * 18 17 16 21 21 N 1.46510 * 109.46906 * 180.02562 * 20 18 17 22 22 C 1.34949 * 126.03797 * 124.71402 * 21 20 18 23 23 C 1.35316 * 107.74650 * 179.83863 * 22 21 20 24 24 C 1.39863 * 107.91849 * 0.42609 * 23 22 21 25 25 N 1.30835 * 108.20643 * 359.73588 * 24 23 22 26 26 C 1.49290 * 107.85382 * 334.35131 * 17 16 14 27 27 C 1.49564 * 104.77532 * 353.53029 * 26 17 16 28 28 H 1.09001 * 107.95142 * 281.73126 * 27 26 17 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.08999 * 110.18775 * 7.40890 * 12 10 9 32 32 H 1.09001 * 110.19059 * 129.18258 * 12 10 9 33 33 H 1.09000 * 110.95909 * 143.56500 * 13 12 10 34 34 H 1.09000 * 110.96191 * 267.26813 * 13 12 10 35 35 H 1.09000 * 110.80241 * 269.88385 * 16 14 13 36 36 H 1.09007 * 110.80352 * 33.17956 * 16 14 13 37 37 H 1.08994 * 109.47450 * 299.99707 * 20 18 17 38 38 H 1.08994 * 109.47497 * 60.00484 * 20 18 17 39 39 H 1.08003 * 126.12123 * 359.97438 * 22 21 20 40 40 H 1.07995 * 126.04039 * 180.15784 * 23 22 21 41 41 H 1.08005 * 125.90309 * 179.71764 * 24 23 22 42 42 H 1.09003 * 110.39412 * 112.41033 * 26 17 16 43 43 H 1.08994 * 110.39898 * 234.81413 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9794 -3.5650 0.5760 12 6 2.3684 -4.1093 -1.4598 13 6 1.4978 -5.3848 -1.7033 14 6 0.3616 -5.1770 -0.7217 15 1 -0.3062 -4.3831 -1.0562 16 6 -0.4156 -6.3164 -0.0943 17 7 -0.8494 -5.7313 1.2126 18 6 -1.9277 -6.1041 1.9301 19 8 -2.1772 -5.5523 2.9809 20 6 -2.8233 -7.2065 1.4265 21 7 -3.9161 -7.4211 2.3785 22 6 -5.2349 -7.3828 2.0952 23 6 -5.9103 -7.6347 3.2404 24 6 -4.9722 -7.8241 4.2604 25 7 -3.7765 -7.6963 3.7450 26 6 0.1244 -4.6613 1.5809 27 6 1.2035 -4.7563 0.5497 28 1 1.8462 -5.5966 0.8124 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.0912 -3.3246 -2.1637 32 1 3.4266 -4.3495 -1.5625 33 1 1.1272 -5.4142 -2.7280 34 1 2.0574 -6.2898 -1.4670 35 1 -1.2784 -6.5795 -0.7062 36 1 0.2262 -7.1838 0.0603 37 1 -3.2361 -6.9253 0.4577 38 1 -2.2459 -8.1250 1.3227 39 1 -5.6728 -7.1883 1.1273 40 1 -6.9840 -7.6774 3.3486 41 1 -5.1962 -8.0385 5.2950 42 1 -0.3539 -3.6826 1.5418 43 1 0.5337 -4.8456 2.5741 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026198302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:01 Heat of formation + Delta-G solvation = 87.203516 kcal Electronic energy + Delta-G solvation = -24916.073132 eV Core-core repulsion = 21385.339299 eV Total energy + Delta-G solvation = -3530.733833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25179 -40.45775 -38.54549 -35.26268 -33.44978 -33.29756 -30.90015 -30.23364 -29.78726 -28.52149 -27.26395 -25.46562 -23.46673 -23.03087 -21.24277 -21.13700 -20.09629 -19.23390 -18.84990 -17.61020 -17.26779 -16.95022 -16.07017 -15.61891 -15.00900 -14.74978 -14.43404 -14.38209 -13.91261 -13.82305 -13.60956 -13.52983 -12.91553 -12.86860 -12.62094 -12.53529 -12.31057 -11.88405 -11.47114 -11.27986 -11.00702 -10.84926 -10.73347 -10.65570 -10.51326 -10.32365 -10.13848 -10.01487 -9.72124 -9.61023 -9.34673 -8.93230 -8.66720 -8.57947 -7.00115 -5.79303 -3.08780 1.79303 2.28572 2.60819 2.84628 2.93220 3.42566 3.47476 3.48384 4.06317 4.29714 4.44865 4.57038 4.69629 4.79372 4.89434 4.99864 5.06362 5.25463 5.27244 5.40949 5.46409 5.53262 5.59029 5.68121 5.74140 5.79568 5.86988 5.92876 5.95757 6.11156 6.18630 6.23815 6.32490 6.38523 6.49821 6.58317 6.61566 6.76876 6.85544 7.00856 7.50640 7.67095 7.68045 8.16348 8.38819 9.50195 10.06218 10.40661 11.42890 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018039 B = 0.003365 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.834702 B = 8318.140977 C = 9354.018247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.196 3.804 11 H 0.056 0.944 12 C -0.145 4.145 13 C -0.098 4.098 14 C -0.125 4.125 15 H 0.094 0.906 16 C 0.113 3.887 17 N -0.623 5.623 18 C 0.513 3.487 19 O -0.511 6.511 20 C 0.121 3.879 21 N -0.363 5.363 22 C 0.052 3.948 23 C -0.273 4.273 24 C 0.037 3.963 25 N -0.267 5.267 26 C 0.135 3.865 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.147 0.853 41 H 0.182 0.818 42 H 0.084 0.916 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -19.316 -2.084 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.085 3.915 11 H 0.074 0.926 12 C -0.186 4.186 13 C -0.136 4.136 14 C -0.144 4.144 15 H 0.113 0.887 16 C -0.009 4.009 17 N -0.360 5.360 18 C 0.298 3.702 19 O -0.385 6.385 20 C -0.004 4.004 21 N -0.145 5.145 22 C -0.094 4.094 23 C -0.302 4.302 24 C -0.150 4.150 25 N -0.087 5.087 26 C 0.014 3.986 27 C -0.139 4.139 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.190 0.810 40 H 0.164 0.836 41 H 0.199 0.801 42 H 0.102 0.898 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.822 -18.881 -1.299 19.531 hybrid contribution -0.747 1.019 -0.353 1.312 sum -5.569 -17.863 -1.652 18.784 Atomic orbital electron populations 1.69645 1.05113 1.25853 1.57354 1.24739 0.95473 0.97698 1.02807 0.86285 0.78536 0.83630 0.77817 1.21744 1.21247 1.21314 1.19194 0.90989 0.84086 1.43103 0.91161 1.42419 1.05686 0.99574 1.88245 1.20024 0.93784 0.85202 0.92480 0.92634 1.23861 0.97967 0.96219 1.00558 1.21821 0.95367 0.98664 0.97774 1.22668 0.97188 0.97934 0.96607 0.88739 1.21843 0.98890 0.96341 0.83827 1.49823 1.26035 1.37773 1.22342 1.20047 0.80978 0.84394 0.84754 1.90810 1.71039 1.54563 1.22093 1.21455 0.88303 0.99642 0.91047 1.48126 1.04424 1.54855 1.07131 1.22546 0.83753 1.02130 1.00924 1.21475 1.00571 1.15874 0.92287 1.23917 0.90096 1.00598 1.00391 1.77504 1.22669 1.20569 0.87952 1.20915 0.88912 0.91150 0.97633 1.22060 0.96389 1.00909 0.94515 0.91302 0.93425 0.78144 0.90533 0.92818 0.92034 0.91965 0.90782 0.90852 0.85932 0.87039 0.80969 0.83551 0.80148 0.89763 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -16.95 4.89 -53.45 -0.26 -17.21 16 10 C 0.20 3.58 3.45 -67.95 -0.23 3.35 16 11 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 12 C -0.15 -2.26 6.74 -23.33 -0.16 -2.42 16 13 C -0.10 -1.18 6.62 -25.66 -0.17 -1.35 16 14 C -0.12 -1.62 3.08 -89.24 -0.28 -1.90 16 15 H 0.09 1.48 7.96 -51.93 -0.41 1.07 16 16 C 0.11 1.17 6.49 -3.05 -0.02 1.15 16 17 N -0.62 -8.83 3.43 -171.65 -0.59 -9.42 16 18 C 0.51 7.88 7.91 -10.99 -0.09 7.80 16 19 O -0.51 -10.51 16.07 5.55 0.09 -10.43 16 20 C 0.12 1.29 6.05 -5.19 -0.03 1.25 16 21 N -0.36 -4.72 3.40 -62.54 -0.21 -4.93 16 22 C 0.05 0.54 11.45 -17.22 -0.20 0.35 16 23 C -0.27 -2.90 10.80 -40.02 -0.43 -3.33 16 24 C 0.04 0.46 12.02 -17.37 -0.21 0.25 16 25 N -0.27 -4.11 11.64 30.62 0.36 -3.75 16 26 C 0.13 2.27 6.65 -4.19 -0.03 2.24 16 27 C -0.12 -1.81 2.27 -91.09 -0.21 -2.01 16 28 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.38 9.75 6.73 -40.82 -0.27 9.47 16 31 H 0.08 1.40 7.98 -51.93 -0.41 0.98 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.57 7.58 -51.93 -0.39 0.18 16 36 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.12 0.86 7.84 -51.93 -0.41 0.45 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.18 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.08 1.72 7.17 -51.93 -0.37 1.35 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -35.32 352.87 -8.35 -43.67 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.46 Total: 8.33 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.29 Total: -1.67 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.02 Total: -62.36 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.32 -8.35 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026198302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.877 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds