Wall clock time and date at job start Fri Apr 10 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.47520 * 34.30157 * 10 9 7 12 12 C 1.56004 * 110.52874 * 271.65847 * 10 9 7 13 13 C 1.56335 * 105.76836 * 248.33401 * 12 10 9 14 14 C 1.51570 * 101.81545 * 25.43801 * 13 12 10 15 15 H 1.08999 * 111.12249 * 72.20551 * 14 13 12 16 16 C 1.51520 * 123.33632 * 207.98547 * 14 13 12 17 17 N 1.49622 * 102.49679 * 151.62927 * 16 14 13 18 18 C 1.34769 * 126.07544 * 154.35610 * 17 16 14 19 19 O 1.21283 * 120.00420 * 179.97438 * 18 17 16 20 20 C 1.50704 * 119.99631 * 359.97296 * 18 17 16 21 21 N 1.46510 * 109.46906 * 180.02562 * 20 18 17 22 22 C 1.34949 * 126.03797 * 124.71402 * 21 20 18 23 23 C 1.35316 * 107.74650 * 179.83863 * 22 21 20 24 24 C 1.39863 * 107.91849 * 0.42609 * 23 22 21 25 25 N 1.30835 * 108.20643 * 359.73588 * 24 23 22 26 26 C 1.49290 * 107.85382 * 334.35131 * 17 16 14 27 27 C 1.49564 * 104.77532 * 353.53029 * 26 17 16 28 28 H 1.09001 * 107.95142 * 281.73126 * 27 26 17 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.08999 * 110.18775 * 7.40890 * 12 10 9 32 32 H 1.09001 * 110.19059 * 129.18258 * 12 10 9 33 33 H 1.09000 * 110.95909 * 143.56500 * 13 12 10 34 34 H 1.09000 * 110.96191 * 267.26813 * 13 12 10 35 35 H 1.09000 * 110.80241 * 269.88385 * 16 14 13 36 36 H 1.09007 * 110.80352 * 33.17956 * 16 14 13 37 37 H 1.08994 * 109.47450 * 299.99707 * 20 18 17 38 38 H 1.08994 * 109.47497 * 60.00484 * 20 18 17 39 39 H 1.08003 * 126.12123 * 359.97438 * 22 21 20 40 40 H 1.07995 * 126.04039 * 180.15784 * 23 22 21 41 41 H 1.08005 * 125.90309 * 179.71764 * 24 23 22 42 42 H 1.09003 * 110.39412 * 112.41033 * 26 17 16 43 43 H 1.08994 * 110.39898 * 234.81413 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9794 -3.5650 0.5760 12 6 2.3684 -4.1093 -1.4598 13 6 1.4978 -5.3848 -1.7033 14 6 0.3616 -5.1770 -0.7217 15 1 -0.3062 -4.3831 -1.0562 16 6 -0.4156 -6.3164 -0.0943 17 7 -0.8494 -5.7313 1.2126 18 6 -1.9277 -6.1041 1.9301 19 8 -2.1772 -5.5523 2.9809 20 6 -2.8233 -7.2065 1.4265 21 7 -3.9161 -7.4211 2.3785 22 6 -5.2349 -7.3828 2.0952 23 6 -5.9103 -7.6347 3.2404 24 6 -4.9722 -7.8241 4.2604 25 7 -3.7765 -7.6963 3.7450 26 6 0.1244 -4.6613 1.5809 27 6 1.2035 -4.7563 0.5497 28 1 1.8462 -5.5966 0.8124 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.0912 -3.3246 -2.1637 32 1 3.4266 -4.3495 -1.5625 33 1 1.1272 -5.4142 -2.7280 34 1 2.0574 -6.2898 -1.4670 35 1 -1.2784 -6.5795 -0.7062 36 1 0.2262 -7.1838 0.0603 37 1 -3.2361 -6.9253 0.4577 38 1 -2.2459 -8.1250 1.3227 39 1 -5.6728 -7.1883 1.1273 40 1 -6.9840 -7.6774 3.3486 41 1 -5.1962 -8.0385 5.2950 42 1 -0.3539 -3.6826 1.5418 43 1 0.5337 -4.8456 2.5741 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026198302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:00 Heat of formation + Delta-G solvation = 62.228436 kcal Electronic energy + Delta-G solvation = -24917.156132 eV Core-core repulsion = 21385.339299 eV Total energy + Delta-G solvation = -3531.816833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14498 -41.59300 -39.78085 -36.70795 -35.06369 -34.29998 -32.59935 -31.27395 -30.82961 -29.87873 -28.22210 -26.88653 -25.17421 -24.33540 -22.18316 -21.94097 -21.16053 -20.31984 -20.22576 -19.40526 -18.30364 -18.04282 -17.23226 -16.81616 -16.44739 -16.05224 -15.82264 -15.56921 -15.26702 -14.89547 -14.81078 -14.61037 -14.40000 -13.81767 -13.68396 -13.52635 -13.32146 -13.21638 -13.02206 -12.85380 -12.61702 -12.36778 -12.25526 -12.06086 -11.89625 -11.54121 -11.49871 -11.38418 -11.16866 -10.94735 -10.87175 -10.31517 -9.77952 -9.49797 -8.98592 -7.94477 -5.21843 0.94020 1.45000 1.47625 1.48181 1.49696 1.53567 1.90521 2.01656 2.55588 2.98403 3.33783 3.39785 3.69120 3.75913 3.94785 4.05130 4.07648 4.11661 4.18358 4.24052 4.32907 4.47384 4.49773 4.63736 4.67954 4.71732 4.73422 4.85758 4.91989 4.95856 5.01823 5.07013 5.17146 5.20191 5.25469 5.40616 5.45011 5.53435 5.70129 5.74809 6.11037 6.27945 6.43280 6.81007 7.03454 7.33856 8.12339 8.33326 9.28728 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018039 B = 0.003365 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.834702 B = 8318.140977 C = 9354.018247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.300 1.300 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.731 5.731 10 C 0.182 3.818 11 H 0.046 0.954 12 C -0.139 4.139 13 C -0.081 4.081 14 C -0.111 4.111 15 H 0.059 0.941 16 C 0.117 3.883 17 N -0.620 5.620 18 C 0.504 3.496 19 O -0.578 6.578 20 C 0.126 3.874 21 N -0.376 5.376 22 C 0.053 3.947 23 C -0.284 4.284 24 C 0.026 3.974 25 N -0.327 5.327 26 C 0.138 3.862 27 C -0.123 4.123 28 H 0.100 0.900 29 H 0.248 0.752 30 H 0.371 0.629 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.214 0.786 40 H 0.172 0.828 41 H 0.199 0.801 42 H 0.033 0.967 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 -22.365 -4.318 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.799 3.201 4 H -0.226 1.226 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.371 5.371 10 C 0.073 3.927 11 H 0.064 0.936 12 C -0.180 4.180 13 C -0.119 4.119 14 C -0.130 4.130 15 H 0.078 0.922 16 C -0.003 4.003 17 N -0.355 5.355 18 C 0.292 3.708 19 O -0.457 6.457 20 C 0.002 3.998 21 N -0.160 5.160 22 C -0.091 4.091 23 C -0.313 4.313 24 C -0.161 4.161 25 N -0.148 5.148 26 C 0.016 3.984 27 C -0.142 4.142 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.203 0.797 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.185 0.815 38 H 0.161 0.839 39 H 0.231 0.769 40 H 0.189 0.811 41 H 0.216 0.784 42 H 0.052 0.948 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.544 -22.001 -3.579 22.749 hybrid contribution -0.778 1.948 0.377 2.131 sum -5.322 -20.053 -3.202 20.993 Atomic orbital electron populations 1.69818 1.06637 1.25835 1.59970 1.25512 0.96249 1.00998 1.04213 0.85272 0.77177 0.79557 0.78143 1.22608 1.20758 1.20142 1.19612 0.91437 0.85355 1.40358 0.90558 1.42599 1.05267 1.00841 1.88393 1.20370 0.93539 0.84046 0.94708 0.93584 1.23651 1.00031 0.97335 0.96948 1.21767 0.94082 0.97744 0.98329 1.22610 0.96836 0.98173 0.95429 0.92229 1.22168 1.00780 0.95685 0.81642 1.49899 1.25218 1.36755 1.23657 1.21076 0.81086 0.84751 0.83909 1.90779 1.72665 1.57092 1.25152 1.21749 0.87641 0.98654 0.91778 1.48356 1.05758 1.55153 1.06690 1.23297 0.82884 1.00358 1.02593 1.21889 1.01718 1.15747 0.91934 1.24418 0.90057 0.99813 1.01790 1.77417 1.24477 1.22983 0.89922 1.20614 0.89906 0.90087 0.97804 1.21904 0.96472 1.00460 0.95411 0.88178 0.94329 0.79667 0.93800 0.90908 0.90381 0.88320 0.86738 0.87281 0.81528 0.83948 0.76894 0.81098 0.78441 0.94828 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 4 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.24 -12.98 9.97 84.03 0.84 -12.14 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.73 -35.92 4.89 -323.02 -1.58 -37.50 16 10 C 0.18 6.66 3.45 44.98 0.16 6.81 16 11 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 12 C -0.14 -4.10 6.74 32.80 0.22 -3.88 16 13 C -0.08 -1.61 6.62 31.29 0.21 -1.40 16 14 C -0.11 -2.60 3.08 -9.90 -0.03 -2.63 16 15 H 0.06 1.84 7.96 -2.39 -0.02 1.82 16 16 C 0.12 1.90 6.49 85.29 0.55 2.45 16 17 N -0.62 -16.82 3.43 -815.36 -2.79 -19.61 16 18 C 0.50 15.14 7.91 87.66 0.69 15.83 16 19 O -0.58 -24.85 16.07 -3.04 -0.05 -24.90 16 20 C 0.13 2.27 6.05 85.63 0.52 2.79 16 21 N -0.38 -9.13 3.40 -351.78 -1.20 -10.32 16 22 C 0.05 0.98 11.45 83.54 0.96 1.94 16 23 C -0.28 -5.56 10.80 21.99 0.24 -5.32 16 24 C 0.03 0.63 12.02 85.23 1.02 1.65 16 25 N -0.33 -10.09 11.64 -57.03 -0.66 -10.75 16 26 C 0.14 4.85 6.65 84.74 0.56 5.41 16 27 C -0.12 -3.62 2.27 -11.10 -0.03 -3.65 16 28 H 0.10 2.39 8.00 -2.39 -0.02 2.37 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.37 20.01 6.73 -92.71 -0.62 19.39 16 31 H 0.04 1.58 7.98 -2.39 -0.02 1.56 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.04 7.58 -2.39 -0.02 1.02 16 36 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.17 1.45 7.84 -2.39 -0.02 1.43 16 38 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.20 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.03 1.50 7.17 -2.39 -0.02 1.48 16 43 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -85.83 352.87 2.79 -83.03 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.39 Total: 27.69 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.38 Total: 3.84 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -5.95 Total: -138.48 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -85.83 2.79 -83.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026198302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.261 kcal (2) G-P(sol) polarization free energy of solvation -85.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds